|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010225 ID=TCONS_00010225|Name=TCONS_00010225|organism=Clytia hemisphaerica|type=transcript|length=760bp GTTTGTTGACATCAGAATCTTGTAATGGGAGTAAGTTTGCAATATAGAGC GTGCATTGGTTTATTTAACtctattaaatttattttagtgaGCTTTGACT TTTGTGTGGGTTTTGATTTAAGTCTTTTGGTTTTCCCGAATCTCTTATTC TGTCTTCCCTacttctttttactttttaagcTTACTCTTCTTCTCCTAGG AGGTGACATTGAGTCGAATCCGGGGCCGGTGGAGAGGGATAACACCTTGT CTGTTTGTCATTGGAATCTAAATAGCGTTTGGGTTGATAACTTTGCGAAG ATTGCTCAAATCACAGCTTCTTTAAATGTTCAtaagtttgatatcttttg tGTTGGTGAATCCTTTCTCGATTCTTCTATCGAGACGGACGATCTAAGGC TAAAGATTGATAACTATGAACTCCTTAGATCCGACCACTCTTCGAATTCT AAAATGGGTGGAGTGTGCCTATATCGCAGAGTTGGTATCTTTGTTGAGGA AAGACCTGATCTGTCCTCTCTTGATGAGTGTCTTGTTTGCGAAGTTAATT CTGGtactaaaaaactttttctttgtctTCTCTATCGTTCCCCAAGTCAA GATGCGGATGAATTCGCAGACTTTAAGCATAAATGGGAGCAGACAATTAT AAATATAAGCAACATTTCTTCTGCTGGCACGATTCTACTTGGTGATTTCA ATGGGAGGAATTCGGAATGGTGGGCTGGAGATACAACAAATTCCCAAGGT GAGGACATTA Run BLAST on NCBI protein sequence of TCONS_00010225-protein >TCONS_00010225-protein ID=TCONS_00010225-protein|Name=TCONS_00010225-protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp
MGVSLQYRACIGLFNSIKFILVSFDFCVGFDLSLLVFPNLLFCLPYFFLL FKLTLLLLGGDIESNPGPVERDNTLSVCHWNLNSVWVDNFAKIAQITASL NVHKFDIFCVGESFLDSSIETDDLRLKIDNYELLRSDHSSNSKMGGVCLY RRVGIFVEERPDLSSLDECLVCEVNSGTKKLFLCLLYRSPSQDADEFADF KHKWEQTIINISNISSAGTILLGDFNGRNSEWWAGDTTNSQGEDI Run BLAST on NCBI transcript from alignment at sc0000103:381607..382366 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010225 ID=TCONS_00010225|Name=TCONS_00010225|organism=Clytia hemisphaerica|type=transcript|length=760bp|location=Sequence derived from alignment at sc0000103:381607..382366 (Clytia hemisphaerica) TAATGTCCTCACCTTGGGAATTTGTTGTATCTCCAGCCCACCATTCCGAA
TTCCTCCCATTGAAATCACCAAGTAGAATCGTGCCAGCAGAAGAAATGTT
GCTTATATTTATAATTGTCTGCTCCCATTTATGCTTAAAGTCTGCGAATT
CATCCGCATCTTGACTTGGGGAACGATAGAGAagacaaagaaaaagtttt
ttagtaCCAGAATTAACTTCGCAAACAAGACACTCATCAAGAGAGGACAG
ATCAGGTCTTTCCTCAACAAAGATACCAACTCTGCGATATAGGCACACTC
CACCCATTTTAGAATTCGAAGAGTGGTCGGATCTAAGGAGTTCATAGTTA
TCAATCTTTAGCCTTAGATCGTCCGTCTCGATAGAAGAATCGAGAAAGGA
TTCACCAACacaaaagatatcaaacttaTGAACATTTAAAGAAGCTGTGA
TTTGAGCAATCTTCGCAAAGTTATCAACCCAAACGCTATTTAGATTCCAA
TGACAAACAGACAAGGTGTTATCCCTCTCCACCGGCCCCGGATTCGACTC
AATGTCACCTCCTAGGAGAAGAAGAGTAAgcttaaaaagtaaaaagaagt
AGGGAAGACAGAATAAGAGATTCGGGAAAACCAAAAGACTTAAATCAAAA
CCCACACAAAAGTCAAAGCtcactaaaataaatttaatagaGTTAAATAA
ACCAATGCACGCTCTATATTGCAAACTTACTCCCATTACAAGATTCTGAT
GTCAACAAAC Coding sequence (CDS) from alignment at sc0000103:381607..382366 >TCONS_00010225 ID=TCONS_00010225|Name=TCONS_00010225|organism=Clytia hemisphaerica|type=CDS|length=735bp|location=Sequence derived from alignment at sc0000103:381607..382366 (Clytia hemisphaerica) AATGTCCTCACCTTGGGAATTTGTTGTATCTCCAGCCCACCATTCCGAAT TCCTCCCATTGAAATCACCAAGTAGAATCGTGCCAGCAGAAGAAATGTTG CTTATATTTATAATTGTCTGCTCCCATTTATGCTTAAAGTCTGCGAATTC ATCCGCATCTTGACTTGGGGAACGATAGAGAagacaaagaaaaagttttt tagtaCCAGAATTAACTTCGCAAACAAGACACTCATCAAGAGAGGACAGA TCAGGTCTTTCCTCAACAAAGATACCAACTCTGCGATATAGGCACACTCC ACCCATTTTAGAATTCGAAGAGTGGTCGGATCTAAGGAGTTCATAGTTAT CAATCTTTAGCCTTAGATCGTCCGTCTCGATAGAAGAATCGAGAAAGGAT TCACCAACacaaaagatatcaaacttaTGAACATTTAAAGAAGCTGTGAT TTGAGCAATCTTCGCAAAGTTATCAACCCAAACGCTATTTAGATTCCAAT GACAAACAGACAAGGTGTTATCCCTCTCCACCGGCCCCGGATTCGACTCA ATGTCACCTCCTAGGAGAAGAAGAGTAAgcttaaaaagtaaaaagaagtA GGGAAGACAGAATAAGAGATTCGGGAAAACCAAAAGACTTAAATCAAAAC CCACACAAAAGTCAAAGCtcactaaaataaatttaatagaGTTAAATAAA CCAATGCACGCTCTATATTGCAAACTTACTCCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00010225-exon-sc0000103-1491911889:381607..382366 | TCONS_00010225-exon-sc0000103-1491911889:381607..382366 | Clytia hemisphaerica | exon |
TCONS_00010225-exon-sc0000103-1510915933:381607..382366 | TCONS_00010225-exon-sc0000103-1510915933:381607..382366 | Clytia hemisphaerica | exon |
TCONS_00010225-exon-sc0000103-1575043694:381607..382366 | TCONS_00010225-exon-sc0000103-1575043694:381607..382366 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000103 | supercontig | sc0000103:381607..382366 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
|