TCONS_00010219 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010219
Unique NameTCONS_00010219
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length658

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010219 ID=TCONS_00010219|Name=TCONS_00010219|organism=Clytia hemisphaerica|type=transcript|length=658bp
TCACAATAATAGTTATTTTTTCGAGAAATTAACCTTTTAGCTACTGGACG
CACTtttaaaatcttacaaaaaaatttcatagcTCTAGCTTTAAACAGTT
ACATCTACGGTTCTAGAAGGAATCAGAAGCTTGTAACTTTCGGTTGGCTG
AAAAATTTGACCTTATTTTGTTGATGAAATGGTCAAAAAGCAGTCAAAAT
CTCAATAAAGttgatttttgcgaaatttaggcactttttttgacattaag
TCCAAAATCTCACTGAAAAGGCCGAATTTTGAAGTTATTTTTCAATGGAA
GGAAAACCCAGCAAGTTTGGCTTAAAATGACGATTTCAAAATCAATGTTG
TTACAAGATATATTTCAACATGATTTATCCCGTCAACAGTAGTAAAGGGG
TTAACTTATCAAAATTAGTTTGCATTAAACTTATTCCCACATTTTTTGTT
AACATTGTCAATGACAGCTTTTTCCACATGTGTGTTCTAGTAGCTTTTTC
CTAAATACATGTGCAGAGCTAATTGCTAAGAATTGAAGCTTGTATGTAAA
CATTCCTTGTGaatactttttttattaatACTCTTAGTTTAGGATCGGAA
GGCATGAACTATCATATGAAGGTGGGTGTAACTTAGAATTCAAAATTATT
CTTACGAA
Run BLAST on NCBI

transcript from alignment at sc0000103:255364..256021

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010219 ID=TCONS_00010219|Name=TCONS_00010219|organism=Clytia hemisphaerica|type=transcript|length=658bp|location=Sequence derived from alignment at sc0000103:255364..256021 (Clytia hemisphaerica)
TTCGTAAGAATAATTTTGAATTCTAAGTTACACCCACCTTCATATGATAG
TTCATGCCTTCCGATCCTAAACTAAGAGTattaataaaaaaagtattCAC
AAGGAATGTTTACATACAAGCTTCAATTCTTAGCAATTAGCTCTGCACAT
GTATTTAGGAAAAAGCTACTAGAACACACATGTGGAAAAAGCTGTCATTG
ACAATGTTAACAAAAAATGTGGGAATAAGTTTAATGCAAACTAATTTTGA
TAAGTTAACCCCTTTACTACTGTTGACGGGATAAATCATGTTGAAATATA
TCTTGTAACAACATTGATTTTGAAATCGTCATTTTAAGCCAAACTTGCTG
GGTTTTCCTTCCATTGAAAAATAACTTCAAAATTCGGCCTTTTCAGTGAG
ATTTTGGActtaatgtcaaaaaaagtgcctaaatttcgcaaaaatcaaCT
TTATTGAGATTTTGACTGCTTTTTGACCATTTCATCAACAAAATAAGGTC
AAATTTTTCAGCCAACCGAAAGTTACAAGCTTCTGATTCCTTCTAGAACC
GTAGATGTAACTGTTTAAAGCTAGAgctatgaaatttttttgtaagattt
taaaAGTGCGTCCAGTAGCTAAAAGGTTAATTTCTCGAAAAAATAACTAT
TATTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005737XLOC_005737Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010219-exon-sc0000103-1491911889:255364..256021TCONS_00010219-exon-sc0000103-1491911889:255364..256021Clytia hemisphaericaexon
TCONS_00010219-exon-sc0000103-1510915933:255364..256021TCONS_00010219-exon-sc0000103-1510915933:255364..256021Clytia hemisphaericaexon
TCONS_00010219-exon-sc0000103-1575043694:255364..256021TCONS_00010219-exon-sc0000103-1575043694:255364..256021Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000103supercontigsc0000103:255364..256021 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.079015	0.0903016	1.90075	3.01107	0.106556	0	0	0	0	0	0	0	0	0	0	0	0	0	0.167989	0	0	0	0	0.164732	0.0848349	0.227139	0.433381	0.462516	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010219 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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