TCONS_00010218 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010218
Unique NameTCONS_00010218
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length844

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010218 ID=TCONS_00010218|Name=TCONS_00010218|organism=Clytia hemisphaerica|type=transcript|length=844bp
TAGACATTCAACCCCTTTGATACCCGATATCCTCAACaagggggcacgga
ctatttctggaaaaacccATTAAGATTCCTTAAATAAATTGTATTTTTAA
CTACTtgttcaaaatttctttggctctTTCTTTGATCCATCCTGGTGTCC
AAAAGttgatttctttttctaaatcCATCGCATGAAAGGACGCTTAATAC
TTCCCTATGTTATCTTAATGTGAGATATATTGTTCTTCATGTGAGATATA
TTGTTTTTCATGCGAGATATATTGTTTTTCAGTCGGGCCTTCGTAGTACC
AAGCAATGACTTCATCTGTGGTGAGCTGGTCTTCGCAAACAGTCGCCAAT
GCTATCTTCATGCGAGATATATTGTTTTTCAGTCGGGCCTTCGCAGTACC
AAGCAATGACTTCATCTGTGGTGAGCTGGTCTTCGCAAACAGTCGCCAAT
GCTATCTTCATGCGAGATATATTGTTTTTCAGTCGGCCCTTCGCAGTACC
AAGCAATGACTTCATCTGTGGTGAGCTGGTCTTCGCAAACAGTCGCCAAT
GCTATCTTCATGCGAGATATATTGTTTTTCAGTCGGCCCTTCGCAGTACC
AAGCAATGACTTCATCTGTGGTGAGCTGTTCTTCACAAACAGTTGCCACT
GCTAAATCAGTGACACGTTCTACTTTCTTGTCTGCGGAATGCCATGGTAG
GATAAGGTGGAGCAACCGCCTCCGCCCATCATTCCACGCCACTGTGTGAT
AATAAATATGCTAATTATGCAAGCGAAACAAACCATCCAAAACTTTCTCA
CTATGTAATTTGCCACCTTCCGGGAAATCGAATATCGGATTTCC
Run BLAST on NCBI

transcript from alignment at sc0000103:183823..184666

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010218 ID=TCONS_00010218|Name=TCONS_00010218|organism=Clytia hemisphaerica|type=transcript|length=844bp|location=Sequence derived from alignment at sc0000103:183823..184666 (Clytia hemisphaerica)
GGAAATCCGATATTCGATTTCCCGGAAGGTGGCAAATTACATAGTGAGAA
AGTTTTGGATGGTTTGTTTCGCTTGCATAATTAGCATATTTATTATCACA
CAGTGGCGTGGAATGATGGGCGGAGGCGGTTGCTCCACCTTATCCTACCA
TGGCATTCCGCAGACAAGAAAGTAGAACGTGTCACTGATTTAGCAGTGGC
AACTGTTTGTGAAGAACAGCTCACCACAGATGAAGTCATTGCTTGGTACT
GCGAAGGGCCGACTGAAAAACAATATATCTCGCATGAAGATAGCATTGGC
GACTGTTTGCGAAGACCAGCTCACCACAGATGAAGTCATTGCTTGGTACT
GCGAAGGGCCGACTGAAAAACAATATATCTCGCATGAAGATAGCATTGGC
GACTGTTTGCGAAGACCAGCTCACCACAGATGAAGTCATTGCTTGGTACT
GCGAAGGCCCGACTGAAAAACAATATATCTCGCATGAAGATAGCATTGGC
GACTGTTTGCGAAGACCAGCTCACCACAGATGAAGTCATTGCTTGGTACT
ACGAAGGCCCGACTGAAAAACAATATATCTCGCATGAAAAACAATATATC
TCACATGAAGAACAATATATCTCACATTAAGATAACATAGGGAAGTATTA
AGCGTCCTTTCATGCGATGgatttagaaaaagaaatcaaCTTTTGGACAC
CAGGATGGATCAAAGAAagagccaaagaaattttgaacaAGTAGTTAAAA
ATACAATTTATTTAAGGAATCTTAATgggtttttccagaaatagtccgtg
cccccttGTTGAGGATATCGGGTATCAAAGGGGTTGAATGTCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005736XLOC_005736Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010218-exon-sc0000103-1491911889:183823..184666TCONS_00010218-exon-sc0000103-1491911889:183823..184666Clytia hemisphaericaexon
TCONS_00010218-exon-sc0000103-1510915933:183823..184666TCONS_00010218-exon-sc0000103-1510915933:183823..184666Clytia hemisphaericaexon
TCONS_00010218-exon-sc0000103-1575043694:183823..184666TCONS_00010218-exon-sc0000103-1575043694:183823..184666Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000103supercontigsc0000103:183823..184666 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0558705	0	0.126519	0.0618894	0.753444	0.952611	1.43661	1.34493	6.07344	7.34799	11.7737	7.77677	1.26336	2.00661	0.444151	0.0680918	1.55184	1.76255	0.356349	1.11868	0.324112	0.316181	0.19218	0.174719	0.299928	0.214143	1.76202	0.899357	0	0.0631803
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010218 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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