|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010213 ID=TCONS_00010213|Name=TCONS_00010213|organism=Clytia hemisphaerica|type=transcript|length=3512bp
AAATAATTAAGAAAAATCACAGTTGGAATACaagatttcaaaagaattta
aagaCGGAGGATGCATAAATTAGGAAATTTCGAGAAGTTTCTAGAAGGAT
GACGAAATGGtataaaaaggagaaaatttcaaatggaCGTCtcataaacc
aaaatttggaataaTCAAGCGGGTTGTAATGCATACATTATCCAAGGTAC
ATATTTCTTGTTGATTATGCTGAGGAATTTTGATCTATTTTGATTGGTGT
TTAGTTGGAACGAAAGAGGTTGAAAAAGACTGGAAGTTAGTATTCTTGGT
GTAATTCAccaaaaaggaattttttatatattattcGTTGTTTGCTTCCA
AATTTAAGTTTGGGTTTTTCATCTGATATGTATTGATAAATACATTTTCT
TTTGTATGTTTCCCAATTACAATTACAACAATTGCTTTTACGTGCAGGTG
ATAATCTCGTTTGACATTCTCACTACTTCGAGAGTGAAGTTTTTTCATGT
GCAGGGGTTGTCCTTGATTCTTCAACTATGGAGCACGTATATAAATTTTT
TCCCGCAGCCAATGTCAGCAAATACTCATTTCATTtcgttttttattaga
acctatcCAAGAcgtgcttatttttttttgaaaacccaCTTTGggcctaa
aatattcttaatagcATCCGCTCTTgaaatttattcaatttaacATACAT
AATTACATTGGGTTATAAAAATTGGCCCTCGAGTCGAACAAGTCTGCTCT
AGTTTAAAGTATAAGAAATGGTTCAATTGCAAAAGTTTCAGataattttg
agcaactttggTTAATCTCTCCAATTCGCAGGCTGGCCATGtgcttacaa
tgttcttaatttttccaaatttgagCTTATGGTATATGCTCTTATAAACT
TGGTTCTAAGAAAAAAACGTGAATTTTATTGTTACGTATCTGTTATATTG
AACTTTCTATTTTAAGGatactttttcaattttattaatatttcatcaaa
tttttggtaatattttatttttcagtttgaaagcttctttttgaatatta
ttttcttACTAATTAGAAAGAGATAATATTAgaacaaaaaatccaaaaat
catcaaattgaCAAGAGAAGAACAAAGAAACCTTTGACGGaagaaaaatt
gttgaaaaattgaaaaaaattatcgaaTTCGAGAAAACGTGAAATATAGA
ATCTCGGTTGTTGGCAATCACTACTTTATAAAGACATTTGAAGTGAGCAA
TCAATCAAGAACGAACTATAATGGCAGTCTCCAGAAAGATGGCGAGTTTA
TCTCTAACAAACGACCAACCCGAGAGTGTGTGTCCAATCGCAAACACCAA
AATCTTACCTGACTTCAAAGTTCAATCGCAATGTCCTTTTCACAAGAAAA
GACATGAAGCAGCTTTGATACCGAACTCTAAAGAGAAAATCTATGAGACG
GACGAGTTATTAAAAAGTATCGGGGGTGGAGATAAGGTCCGCCAAATGTG
CACCCGATTTTACGCCCATGCTTTTGAAGACCAAACACTAACTAAATTCA
TGTTCGAAAAAGATTGCGCAGCCGCTCACGGTCAACGCTTGGCAGATTGG
TTTATTGAACGAATGGGTGGTGAAGGAACACCTTGGGCGGATTCAGGGCG
GTCTGGATTACGCCAATATTCGCATTTTCGGGCGTGGAATTCTTCAAAAC
GCCCTGAAGAAGAACGAGGGATTCGATTCAAGTTGGATGATTGTCGTGTT
TGGATGCGATTGATGTTTTGGTCAATGAGGGAAGTCGGGCTAGACAAGCA
GCCTACTTTTGTGCACTGGTTTTCAGCGGCTATTGAGCGCTTCATCGGGA
TCTACGAGCGGAGTGCACCTCCTTACACTAAAAGAGATTTGAAATGGTCA
GAGAAGAAAAAGAATATCGATAAATATATTTCGgatgattttttaatgaa
agatGTTGTAGGGAAAGGACGCTAATGggaaatatttttccccgaatGTT
TCCCCTATTCATTGATCTTTAATGGGAATGGGTTAATTAATGATTCCATT
ACAAAGACTTTCATGTACATCATTAAACATGACATAAATATGCGAAACCC
AATGAAAGacatcttttgaaagaaagctAATTCGGGTTACTTTTCACCGG
ATTCCTTAACCCGATAAATATAGAGTGTTATACATTCACCTGTATATAAA
CACGTTAACATTACACTACACAAATAATTTTGTAATtagtttttttcaca
ttgaaaaatcgaaaatacgCAAACTCGCCCTTTCTATGAAtgtatttttc
atcattttatcgATAACATCCCGAGAGATCAGGTACCTAACAGTCCCTTT
CTCTCGCCAATTTTGTCTCCCGTAGTTTATAAGCTCCACTAGACAATGCT
ATCGTCTGTTACATGGTTAGGCGGGAAAATATTATACACGCGAAGTTTTG
GCGGtaaacggaaaaaaatcggcggtaGAGTTCCGAAGACTCTACCGGCT
GtgaactcttttcggcaaaaaaaacgtTTGCTAATTCTCTTCGGCTTTGG
GCATTTTGTTTAGaaagtgatttgtcttagactaaagcaggggggggggg
tcggtagtaaaatctcagacgtATATGAGTAATAAAgaatttttacgaat
ttttacataccaccacccagactcttggaagaggtattttactactaccc
tggtagtataagtttttgggacaatttgtcatggaaaccacctatttttt
ggttgcttttcggactgattttacaaaaaaagctaagaaatgattatttc
tgtgacatatttttcacttagtgcaaaaattaattttttgctcTTAGAAT
taagcaaacaactttccaacagaaaattttttcaaactttttttctgaat
aTTATTTTTCTCACTAATTAGAAAGAAACAAGACGactcagagtcgaaaa
tttcgcacagTGTTTGATTATTCATAGATGAAATGATCATTTTAAACGAC
CGGGACTGGGGGAGTACTACTAGGGTTAGAGAATGTCAGGTCAGACCTGA
GAAAAACTGGCTCTAACAGAGAATAAAGTTATCCTTACAGAGACAAGGCG
AAAAAGTGACTCtaagaacaattttcaaaaaaaattctaaccTTCTAGAG
ATCTTTCTTTGACTTTTCAAGTTTCGTACCTTAAATAATTCAGAGACACT
TGGGAGGGTCATAAACCAAACCTTATAGCATCAGCACATACCTGGCACCT
ATTAATGTCTAAGTACTCCCTCCCCCATTTACCATTAAAAGAATGCAATA
AATAGAACGAGGCTAGAGCTAGAGCTTTATTGCCACCTAAATGTGAACTG
TCCCAGTGTGGCCAAGTTACATGAATACAGTCCACATCAGTTTTTACTGC
CAATATGTATGAAATTGTATATAGTTTGTATGTATAgttttgtatataga
acctgacctgtgttgacaaataaataaatatcaatCTGACAAAGATATAT
ACAAAAATTTTA Run BLAST on NCBI protein sequence of TCONS_00010213-protein >TCONS_00010213-protein ID=TCONS_00010213-protein|Name=TCONS_00010213-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
MAVSRKMASLSLTNDQPESVCPIANTKILPDFKVQSQCPFHKKRHEAALI
PNSKEKIYETDELLKSIGGGDKVRQMCTRFYAHAFEDQTLTKFMFEKDCA
AAHGQRLADWFIERMGGEGTPWADSGRSGLRQYSHFRAWNSSKRPEEERG
IRFKLDDCRVWMRLMFWSMREVGLDKQPTFVHWFSAAIERFIGIYERSAP
PYTKRDLKWSEKKKNIDKYISDDFLMKDVVGKGR Run BLAST on NCBI transcript from alignment at sc0000103:27583..31094 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010213 ID=TCONS_00010213|Name=TCONS_00010213|organism=Clytia hemisphaerica|type=transcript|length=3512bp|location=Sequence derived from alignment at sc0000103:27583..31094 (Clytia hemisphaerica)
TAAAATTTTTGTATATATCTTTGTCAGattgatatttatttatttgtcaa
cacaggtcaggttctatatacaaaacTATACATACAAACTATATACAATT
TCATACATATTGGCAGTAAAAACTGATGTGGACTGTATTCATGTAACTTG
GCCACACTGGGACAGTTCACATTTAGGTGGCAATAAAGCTCTAGCTCTAG
CCTCGTTCTATTTATTGCATTCTTTTAATGGTAAATGGGGGAGGGAGTAC
TTAGACATTAATAGGTGCCAGGTATGTGCTGATGCTATAAGGTTTGGTTT
ATGACCCTCCCAAGTGTCTCTGAATTATTTAAGGTACGAAACTTGAAAAG
TCAAAGAAAGATCTCTAGAAggttagaattttttttgaaaattgttctta
GAGTCACTTTTTCGCCTTGTCTCTGTAAGGATAACTTTATTCTCTGTTAG
AGCCAGTTTTTCTCAGGTCTGACCTGACATTCTCTAACCCTAGTAGTACT
CCCCCAGTCCCGGTCGTTTAAAATGATCATTTCATCTATGAATAATCAAA
CActgtgcgaaattttcgactctgagtCGTCTTGTTTCTTTCTAATTAGT
GAGAAAAATAAtattcagaaaaaaagtttgaaaaaattttctgttggaaa
gttgtttgcttaATTCTAAgagcaaaaaattaatttttgcactaagtgaa
aaatatgtcacagaaataatcatttcttagctttttttgtaaaatcagtc
cgaaaagcaaccaaaaaataggtggtttccatgacaaattgtcccaaaaa
cttatactaccagggtagtagtaaaatacctcttccaagagtctgggtgg
tggtatgtaaaaattcgtaaaaattcTTTATTACTCATATacgtctgaga
ttttactaccgaccccccccccctgctttagtctaagacaaatcactttC
TAAACAAAATGCCCAAAGCCGAAGAGAATTAGCAAacgttttttttgccg
aaaagagttcaCAGCCGGTAGAGTCTTCGGAACTCtaccgccgatttttt
tccgtttaCCGCCAAAACTTCGCGTGTATAATATTTTCCCGCCTAACCAT
GTAACAGACGATAGCATTGTCTAGTGGAGCTTATAAACTACGGGAGACAA
AATTGGCGAGAGAAAGGGACTGTTAGGTACCTGATCTCTCGGGATGTTAT
cgataaaatgatgaaaaatacaTTCATAGAAAGGGCGAGTTTGcgtattt
tcgatttttcaatgtgaaaaaaactaATTACAAAATTATTTGTGTAGTGT
AATGTTAACGTGTTTATATACAGGTGAATGTATAACACTCTATATTTATC
GGGTTAAGGAATCCGGTGAAAAGTAACCCGAATTagctttctttcaaaag
atgtCTTTCATTGGGTTTCGCATATTTATGTCATGTTTAATGATGTACAT
GAAAGTCTTTGTAATGGAATCATTAATTAACCCATTCCCATTAAAGATCA
ATGAATAGGGGAAACattcggggaaaaatatttccCATTAGCGTCCTTTC
CCTACAACatctttcattaaaaaatcatcCGAAATATATTTATCGATATT
CTTTTTCTTCTCTGACCATTTCAAATCTCTTTTAGTGTAAGGAGGTGCAC
TCCGCTCGTAGATCCCGATGAAGCGCTCAATAGCCGCTGAAAACCAGTGC
ACAAAAGTAGGCTGCTTGTCTAGCCCGACTTCCCTCATTGACCAAAACAT
CAATCGCATCCAAACACGACAATCATCCAACTTGAATCGAATCCCTCGTT
CTTCTTCAGGGCGTTTTGAAGAATTCCACGCCCGAAAATGCGAATATTGG
CGTAATCCAGACCGCCCTGAATCCGCCCAAGGTGTTCCTTCACCACCCAT
TCGTTCAATAAACCAATCTGCCAAGCGTTGACCGTGAGCGGCTGCGCAAT
CTTTTTCGAACATGAATTTAGTTAGTGTTTGGTCTTCAAAAGCATGGGCG
TAAAATCGGGTGCACATTTGGCGGACCTTATCTCCACCCCCGATACTTTT
TAATAACTCGTCCGTCTCATAGATTTTCTCTTTAGAGTTCGGTATCAAAG
CTGCTTCATGTCTTTTCTTGTGAAAAGGACATTGCGATTGAACTTTGAAG
TCAGGTAAGATTTTGGTGTTTGCGATTGGACACACACTCTCGGGTTGGTC
GTTTGTTAGAGATAAACTCGCCATCTTTCTGGAGACTGCCATTATAGTTC
GTTCTTGATTGATTGCTCACTTCAAATGTCTTTATAAAGTAGTGATTGCC
AACAACCGAGATTCTATATTTCACGTTTTCTCGAAttcgataattttttt
caatttttcaacaatttttcttCCGTCAAAGGTTTCTTTGTTCTTCTCTT
GtcaatttgatgatttttggattttttgttcTAATATTATCTCTTTCTAA
TTAGTaagaaaataatattcaaaaagaagctttcaaactgaaaaataaaa
tattaccaaaaatttgatgaaatattaataaaattgaaaaagtatCCTTA
AAATAGAAAGTTCAATATAACAGATACGTAACAATAAAATTCACGTTTTT
TTCTTAGAACCAAGTTTATAAGAGCATATACCATAAGctcaaatttggaa
aaattaagaacattgtaagcaCATGGCCAGCCTGCGAATTGGAGAGATTA
AccaaagttgctcaaaattatCTGAAACTTTTGCAATTGAACCATTTCTT
ATACTTTAAACTAGAGCAGACTTGTTCGACTCGAGGGCCAATTTTTATAA
CCCAATGTAATTATGTATgttaaattgaataaatttcAAGAGCGGATgct
attaagaatattttaggccCAAAGtgggttttcaaaaaaaaataagcacg
TCTTGgataggttctaataaaaaacgaAATGAAATGAGTATTTGCTGACA
TTGGCTGCGGGAAAAAATTTATATACGTGCTCCATAGTTGAAGAATCAAG
GACAACCCCTGCACATGAAAAAACTTCACTCTCGAAGTAGTGAGAATGTC
AAACGAGATTATCACCTGCACGTAAAAGCAATTGTTGTAATTGTAATTGG
GAAACATACAAAAGAAAATGTATTTATCAATACATATCAGATGAAAAACC
CAAACTTAAATTTGGAAGCAAACAACgaataatatataaaaaattccttt
ttggTGAATTACACCAAGAATACTAACTTCCAGTCTTTTTCAACCTCTTT
CGTTCCAACTAAACACCAATCAAAATAGATCAAAATTCCTCAGCATAATC
AACAAGAAATATGTACCTTGGATAATGTATGCATTACAACCCGCTTGAtt
attccaaattttggtttatgaGACGtccatttgaaattttctccttttta
taCCATTTCGTCATCCTTCTAGAAACTTCTCGAAATTTCCTAATTTATGC
ATCCTCCGtctttaaattcttttgaaatcttGTATTCCAACTGTGATTTT
TCTTAATTATTT Coding sequence (CDS) from alignment at sc0000103:27583..31094 >TCONS_00010213 ID=TCONS_00010213|Name=TCONS_00010213|organism=Clytia hemisphaerica|type=CDS|length=705bp|location=Sequence derived from alignment at sc0000103:27583..31094 (Clytia hemisphaerica)
TTAGCGTCCTTTCCCTACAACatctttcattaaaaaatcatcCGAAATAT
ATTTATCGATATTCTTTTTCTTCTCTGACCATTTCAAATCTCTTTTAGTG
TAAGGAGGTGCACTCCGCTCGTAGATCCCGATGAAGCGCTCAATAGCCGC
TGAAAACCAGTGCACAAAAGTAGGCTGCTTGTCTAGCCCGACTTCCCTCA
TTGACCAAAACATCAATCGCATCCAAACACGACAATCATCCAACTTGAAT
CGAATCCCTCGTTCTTCTTCAGGGCGTTTTGAAGAATTCCACGCCCGAAA
ATGCGAATATTGGCGTAATCCAGACCGCCCTGAATCCGCCCAAGGTGTTC
CTTCACCACCCATTCGTTCAATAAACCAATCTGCCAAGCGTTGACCGTGA
GCGGCTGCGCAATCTTTTTCGAACATGAATTTAGTTAGTGTTTGGTCTTC
AAAAGCATGGGCGTAAAATCGGGTGCACATTTGGCGGACCTTATCTCCAC
CCCCGATACTTTTTAATAACTCGTCCGTCTCATAGATTTTCTCTTTAGAG
TTCGGTATCAAAGCTGCTTCATGTCTTTTCTTGTGAAAAGGACATTGCGA
TTGAACTTTGAAGTCAGGTAAGATTTTGGTGTTTGCGATTGGACACACAC
TCTCGGGTTGGTCGTTTGTTAGAGATAAACTCGCCATCTTTCTGGAGACT
GCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010213-exon-sc0000103-1491911889:27583..31094 | TCONS_00010213-exon-sc0000103-1491911889:27583..31094 | Clytia hemisphaerica | exon |
| TCONS_00010213-exon-sc0000103-1510915933:27583..31094 | TCONS_00010213-exon-sc0000103-1510915933:27583..31094 | Clytia hemisphaerica | exon |
| TCONS_00010213-exon-sc0000103-1575043694:27583..31094 | TCONS_00010213-exon-sc0000103-1575043694:27583..31094 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000103 | supercontig | sc0000103:27583..31094 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR009050 | Globin-like |
Blast
The following BLAST results are available for this feature:
|
