TCONS_00010210 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010210
Unique NameTCONS_00010210
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length407

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010210 ID=TCONS_00010210|Name=TCONS_00010210|organism=Clytia hemisphaerica|type=transcript|length=407bp
CACAGTTGCAAAAAATTACATCACCTTCACAACATGTCGAAAAGAAAATC
ACAAAACGAAAATACCCCCCTTCAACACAGACAACCATCAGTGATGATAC
AGTGAAAGACTTTATAGTGACTATGTCACCGAATAAGATCTCCAAATACG
CCAAACCCTACTTTAACTTGCATGTTGAGACGGAGGACCACACAGTAAAA
CGTGCTGTATGCTACTCACCACATAAGAGGCGGTTATTGGAAGAAGCTGA
ATCAAGCAAAAGCGGTGTTTGCATTACCAAAATACACACATATGATAATG
CTACAATCAAAATCGGTGACAATTCCTTGATAAAGCATGAATCGTTGGGC
TTCAAGCCTGAATTCAAGATGGAGCCAACAAAAATTGAACATCTGATTAA
TGAGGTT
Run BLAST on NCBI

protein sequence of TCONS_00010210-protein

>TCONS_00010210-protein ID=TCONS_00010210-protein|Name=TCONS_00010210-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
QLQKITSPSQHVEKKITKRKYPPSTQTTISDDTVKDFIVTMSPNKISKYA
KPYFNLHVETEDHTVKRAVCYSPHKRRLLEEAESSKSGVCITKIHTYDNA
TIKIGDNSLIKHESLGFKPEFKMEPTKIEHLINEV
Run BLAST on NCBI

transcript from alignment at sc0000103:401491..403506-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010210 ID=TCONS_00010210|Name=TCONS_00010210|organism=Clytia hemisphaerica|type=transcript|length=2016bp|location=Sequence derived from alignment at sc0000103:401491..403506- (Clytia hemisphaerica)
CACAGTTGCAAAAAATTGTAAGTTTTAATCTAAAATAATCCTGTGGTTAA
ATGAATTGCCAACCACAACAATCTTCGTACTGGGGGGTCACACAGTGATC
ATCACTCAACAGCACATATTTTTTAAGAAAGAAGTCAATACTGTATTAAT
ATTGAAATACTATTTTGAGAAGGTACCTTTTGTTACACTGTTACAATAAT
AAATATTATTTCTTTTATAGACATCACCTTCACAACATGTCGAAAAGAAA
ATCACAAAACGAAAATACCCCCCTTCAACACAGACAACCATCAGTAAGTG
ATATCATNGAAACGAAAATACCCCCTTCAACACAGACAACCATCAGTAAG
TGATATCATTCCAATTCCATTGAACAGGGGTAGGGATGTGAACTGCTGCC
AACAAGAATGCCTTATAAAATATCATTCAAACAGTTTTGGCTGTCGACTA
GAAAATGATGGTCTTCTGACGACACATCAAATGATCAGGCTATCAGACAT
TTTCTTCCATTATAATTTTTGAAACAACTTGAAGTTTTTCAAGTCAGATT
GGGCCATTCCAGAAATTTTTGTTAGCCTAGTACCCGCGTCAGACGACATG
CATTAGGCCATTCCAGGTTTTGTCCGTAAATGGGGGGGGGGCGGAACAAC
AACACGGAATTTCTGAAGGTAAATTGGTTTTGAAAAATTCTGAATTTCCA
AACCTTAAGAACAAAAATTACAAAATTTCCAAGGCATTGAGTTAAGACGA
GTAAAAACGTCTCTTTAAAAAAACTATGTAATTTCAGAAAGTATTTTGAA
AATCAAAAGGAAATTTCAAGGCCTTAATTTTTGCAAAAAACGGTGTAGTC
CGCAGGGGGTATACGGAAAATCTTTTCTGGCCTTGGAAACAATTTTTTAT
TCCAGTGCTGGTTGGAAATCCTGAAAATCCATTTCAAAATTTCACTCTTT
TTGCCTTTTTTATTCCATTGCTGTGAAAAATAATACTTTTCTTCTCTCCC
CCCAAATTTTGAATTTTCGTGAAAACCTTTCCCTCAGAAATCCTGTTACA
GACAAATTCTGGAACAGTCTATTGTGGGTCATGTAGCTATATCAGCTCTG
GATAAAAAGTTGTGGATCCTATGGAAAGTGTGACTTAGCAATTTTCTGAG
TTTGGAGAAGGGTCTTAAAAACAACTTTTGGAGGAATACACCTTTCCCGT
AATTCAAATTTCTCAGAGAAATGGCCTGGGAAAATGTGCGCTCCACCGTT
GTGTATAAAATTGTTTGGGAGGTAAAAAACGCGTATTTGACTGCGAGGTG
TTAGGGAAAGTGGGATTTGATTCTCTAACTTTTGTCAGCAACCTTCTTTT
GGCAAAATATTTTCAGGGTGGTATATCATGAATAGATTGAACATACAAAA
ATTTGAGGGGATTTTGTGCGACAGAACTTAAGAAAAGCTCAAAAAACCAA
CTTTCCCTAAGGGAATGCAGGCAAAAACAGGTTTGTTTACCTCCAGAGAC
CAAACGGTGGAGAGCATCAAAATAATGCTCGTGCATTAGTTTTACGAATT
ACGGGAAAGGTGTATTAACACTCTTGGAAATTTCCAAAAATGCACCGAAA
CCCCTGGAAAGTTTGTCAATGCCCCTGTACTTAAAATGGAATAAAGTTCT
AATATGGCAACCCAATGTAACTAAAGAATTTATTTGTTTACCTCAATAGG
TGATGATACAGTGAAAGACTTTATAGTGACTATGTCACCGAATAAGATCT
CCAAATACGCCAAACCCTACTTTAACTTGCATGTTGAGACGGAGGACCAC
ACAGTAAAACGTGCTGTATGCTACTCACCACATAAGAGGCGGTTATTGGA
AGAAGCTGAATCAAGCAAAAGCGGTGTTTGCATTACCAAAATACACACAT
ATGATAATGCTACAATCAAAATCGGTGACAATTCCTTGATAAAGCATGAA
TCGTTGGGCTTCAAGCCTGAATTCAAGATGGAGCCAACAAAAATTGAACA
TCTGATTAATGAGGTT

Coding sequence (CDS) from alignment at sc0000103:401491..403506-

>TCONS_00010210 ID=TCONS_00010210|Name=TCONS_00010210|organism=Clytia hemisphaerica|type=CDS|length=1215bp|location=Sequence derived from alignment at sc0000103:401491..403506- (Clytia hemisphaerica)
GTGATGATACAGTGAAAGACTTTATAGTGACTATGTCACCGAATAAGATC
TCCAAATACGCCAAACCCTACTTTAACTTGCATGTTGAGACGGAGGACCA
CACAGTAAAACGTGCTGTATGCTACTCACCACATAAGAGGCGGTTATTGG
AAGAAGCTGAATCAAGCAAAAGCGGTGTTTGCATTACCAAAATACACACA
TATGATAATGCTACAATCAAAATCGGTGACAATTCCTTGATAAAGCATGA
ATCGTTGGGCTTCAAGCCTGAATTCAAGATGGAGCCAACAAAAATTGAAC
ATCTGATTAATGAGGTTACATCACCTTCACAACATGTCGAAAAGAAAATC
ACAAAACGAAAATACCCCCCTTCAACACAGACAACCATCACAGTTGCAAA
AAATTGTGATGATACAGTGAAAGACTTTATAGTGACTATGTCACCGAATA
AGATCTCCAAATACGCCAAACCCTACTTTAACTTGCATGTTGAGACGGAG
GACCACACAGTAAAACGTGCTGTATGCTACTCACCACATAAGAGGCGGTT
ATTGGAAGAAGCTGAATCAAGCAAAAGCGGTGTTTGCATTACCAAAATAC
ACACATATGATAATGCTACAATCAAAATCGGTGACAATTCCTTGATAAAG
CATGAATCGTTGGGCTTCAAGCCTGAATTCAAGATGGAGCCAACAAAAAT
TGAACATCTGATTAATGAGGTTACATCACCTTCACAACATGTCGAAAAGA
AAATCACAAAACGAAAATACCCCCCTTCAACACAGACAACCATCACAGTT
GCAAAAAATTGTGATGATACAGTGAAAGACTTTATAGTGACTATGTCACC
GAATAAGATCTCCAAATACGCCAAACCCTACTTTAACTTGCATGTTGAGA
CGGAGGACCACACAGTAAAACGTGCTGTATGCTACTCACCACATAAGAGG
CGGTTATTGGAAGAAGCTGAATCAAGCAAAAGCGGTGTTTGCATTACCAA
AATACACACATATGATAATGCTACAATCAAAATCGGTGACAATTCCTTGA
TAAAGCATGAATCGTTGGGCTTCAAGCCTGAATTCAAGATGGAGCCAACA
AAAATTGAACATCTGATTAATGAGGTTACATCACCTTCACAACATGTCGA
AAAGAAAATCACAAAACGAAAATACCCCCCTTCAACACAGACAACCATCA
CAGTTGCAAAAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005729XLOC_005729Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010210-proteinTCONS_00010210-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010210-exon-sc0000103-1575043694:403490..403506TCONS_00010210-exon-sc0000103-1575043694:403490..403506Clytia hemisphaericaexon
TCONS_00010210-exon-sc0000103-1575043694:403214..403286TCONS_00010210-exon-sc0000103-1575043694:403214..403286Clytia hemisphaericaexon
TCONS_00010210-exon-sc0000103-1575043694:401491..401807TCONS_00010210-exon-sc0000103-1575043694:401491..401807Clytia hemisphaericaexon
TCONS_00010210-exon-sc0000103-1510915933:403490..403506TCONS_00010210-exon-sc0000103-1510915933:403490..403506Clytia hemisphaericaexon
TCONS_00010210-exon-sc0000103-1510915933:403214..403286TCONS_00010210-exon-sc0000103-1510915933:403214..403286Clytia hemisphaericaexon
TCONS_00010210-exon-sc0000103-1510915933:401491..401807TCONS_00010210-exon-sc0000103-1510915933:401491..401807Clytia hemisphaericaexon
TCONS_00010210-exon-sc0000103-1491911889:403490..403506TCONS_00010210-exon-sc0000103-1491911889:403490..403506Clytia hemisphaericaexon
TCONS_00010210-exon-sc0000103-1491911889:403214..403286TCONS_00010210-exon-sc0000103-1491911889:403214..403286Clytia hemisphaericaexon
TCONS_00010210-exon-sc0000103-1491911889:401491..401807TCONS_00010210-exon-sc0000103-1491911889:401491..401807Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000103supercontigsc0000103:401491..403506 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.093514	0	0	0	0	0.0508723	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010210 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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