TCONS_00010197 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010197
Unique NameTCONS_00010197
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2754

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010197 ID=TCONS_00010197|Name=TCONS_00010197|organism=Clytia hemisphaerica|type=transcript|length=2754bp
caaaCTAACACATTTACACATTactaacaaaaataaaattaaatcatGAT
TATCCAAGATATTCTAATGATTGCTGTTTGTACCATGGTGACCACCATCC
AATCCGACACTATAGAAGATACAATGAATAATAATATCAATGTGGGTGCA
AGTGAGAATGAACCTCATTTTCGTTTGCTGAAGTATAGAGATGTTTACGA
GTTGGCGAAGAAGAGATTACACAACCCTCTTCATTTGGAAGAATTGGCCA
AGAAACTGAAGAAAATGGATAAAACGGAAATGATGTACAAACGACAACGA
GATACTGGGGATTCAGAATACGATGCCACAGCAGAAAAGCAAATACAAAA
CCTTTTGCCAGACATTTTACATCAGTATGGTGTATTGGAAGTAGACGAAA
CATGGCATTCCAAACCAATGCATTTTGAAGATGCACGTCTCCAAAGGATC
TGGCAACTTGCCATCGATGAAGCGAATTACAATGGTGACGAGCTCCGAGA
ATTGCACAACGAACTTCACgccatgcaaaaaaaattatccaacTACATCT
GGACCGTTCGCCAACTAGAATCactcaaagaaaaagaaaacaacgaAACA
AATAATTACGTcagcgatgacgtcatcgacaaTTCGGTTGACGGAAAGGC
TGACGAGGAAGAGAAGACGAATGTGGAaagtttgaaatcgaaagtgaaaa
atgaatttGGGAGTTTGGACGAAGAAGTCTTTGCATTGAAAGATAAGGTA
GCGATGCGAATCAAACAAGACAAGTTAGGCGAACTGACGGACAGTCGTGT
CCGAGAATTGATGGAAAAAGCGAAAGAAATGATGCTGGAAAAGGACCTCC
AAAAATTTAAGtcGGAGCTTGATCATTTTCAAAACCGTATCTCGAAGTTA
GAACACTGGCGGAAAGTGAGTGAGAACTTGAGAAAACATTTGGAGGAAAA
CCAGTTCGAAAAAGAACTCGTAGATGAATACCAATTCTCGAAAGCCAAAG
TTAAAGAATTGACCAAGTTTGTAAAGAAGTACCACACCACATTGTACAAC
CGTCTCTACAAAAATTACAAGAATGAACTATGATTCGCCATAGCAAACCC
TTGAATCTACAAACCCTGTCAAGGTATATCGTTCTGTTGTTTTTCctatt
tcctacctaacctcggcacacttctcagcaaaagcacgatatctagccct
tcgggctttataaatctatggttctCCCAAGCAAGACAAGTGAACACGAA
ACAGAAATGGACTTTCATAAACTGTAACAATTACCGTTTGGTGGTTTTTG
AATGACTTTTGATGCGGAACGAGCAGACCAAAATCTGATCGCTGTCGTAT
GAATCTTTAgaaaaaacatcaattgtgAACATTTACCGCGAAAGATAATA
TTTTTCGATAACAATATATTTataaagtgtaaaaaaaaattaaaaggtgA
GAGCTTTAAAGAAGGATTTCGATATTAAGCAGAGATCCATTATTGTAGAG
ATTTATTAACCAGAGTTGATGTAAAATATATGCGCCAAATGCTTCTGCTC
TACCAAATGAAGAAGTATGATTTTAAAATAAGACACACCCGTGTGTGACc
actgtgccaaatttcatgtttttatcaCAATTAGCacgatttttctttaa
aatgaccTCACTACACAATTTGCTTTACAGTATTTAAAGTTACTTGTTGT
TACATATTAAGAATTTTACAATAAGATTGAAAATGGACCCATTTGGATCA
GATGTGAACTGTCACTTAGGCTCATCCAATTGGGTTGTTGTCAACGATCC
GAACTATTAGGTCAACTTCAAGTTATCATTGTCGTTGAGAAATTGAAagg
tttcatttcattttcatcgaAAGTTCTCTTGCTTTTTGTTTGATCTTTTG
AGGAGTCATACATCCAATGTCTCTCTCTAAATCGATCAGCTTAAATCCTG
CAATCACTCTACCAAAACTTTGTTCCCAAAACTCGTCAGATTTAGGACCC
TCCAAATACCAAGCAATAAATTCCCCATTTTTGATTTTGTCGTTACAAAT
GGTCGTCATTGAAAGATCCGTCATCGTTTCTACCGACTTGTCGATACGTT
CCCATGGAAACACAGCTTTTACAATACGACACTCTTCGTTAACGTAACCC
ATGACGTGATACGTGACTTGTAGATTATATAAACGCGTCGGCCCGTACGT
GACGTGCTCCCTGTACACCAGGCCACCTTCCGGTACTTCGAAAACCGGTG
AAGATGTCGCCACGACGGTTTTTGCAAAATATGTAAATGCTGTTTTACGT
ATTGGATCAAAGGAAGTGACGTGGGCCAACGTGTTTTCCATCTTTGTCCA
TGCATTTTGTTTCAATAGCGGTACACATTCGGGTGAATCAACGAGTTTAA
GGTCACCAGCATTCAATCCAAAAGCTTTTTCGATATCACTGACTAGAACG
TTATCTATGGACGCCATTTTGTGAAATAATCAATTGAAGCGCTACTTGGT
TTTGCTTTTTGCTTGTTTAATCCAGAGATTAAAAATTATAGCAGTTTAAA
GAcaatttctacaaaaaataaaaaatttctcctTGCTCAAATCTCATAGT
GTTTTCTGCTATTGATGACATTGATAGCAAAGGAAAACCCGAGAGAAATA
CAGTCATTGTTTGGTTGAATAGCTACAGAGGAAAAccacaaaagttgaaa
atagtCGGTCGGGCAAAGCCGGACAAAAAACCCATTGACATAATTTATGC
CTAA
Run BLAST on NCBI

transcript from alignment at sc0000103:190186..196139-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010197 ID=TCONS_00010197|Name=TCONS_00010197|organism=Clytia hemisphaerica|type=transcript|length=5954bp|location=Sequence derived from alignment at sc0000103:190186..196139- (Clytia hemisphaerica)
CAAACTAACACATTTACACATTACTAACAAAAATAAAATTAAATCATGAT
TATCCAAGATATTCTAATGATTGCTGTTTGTACCATGGTGACCACCATCC
AATCCGACACTATAGAAGATACAATGAATAATAATATCAATGTGGGTGCA
AGTGAGAATGAACCTCATTTTCGTTTGCTGAAGTATAGAGATGTTTACGA
GTTGGCGAAGAAGAGATTACACAACCCTCTTCATTTGGAAGAATTGGCCA
AGAAACTGAAGAAAATGGATAAAACGGAAATGATGTACAAACGACAACGA
GATACTGGTTTGATAACTTTTTTGTTCTTTTTCACCTTGAAATAAACAAA
TGATTTTCAATAATATACCCATAGTGACATATAAAGACTACTCTTCACTT
GCGCGCGCTGCGATCGTATTTTTTTGAGAAAAGCTTCCACGCTATTGGTC
AAGAGAAAAATGAAGCAATTCCATTGGCGCGATCTGACGTAACGGTTGAA
AAAAGTTGAAATATATCCAACTTTTTTTTCGAGTGCGCGCTACATTTTTA
TTGACAAAATCTTTTTTCCAAGCAAAAAGGATTAAAGCCAAACAACGGTG
TGATCAAAGTGCGCGCAAGTGGAGACTGGCCTTAATGTAGATATAACCGG
TTTTATGACTTATAGATAAACACAAACTCAAAATGAATTGAGGTTCAGAT
TTCACGAGTAGTTAAAATTGATTTAAATGTGGAGCACATTAAATATGTTC
CTAATGTGTATATGACGTCATGATTTATGACTATTTTGAGCCAAGTTGTC
TTTTCCTCGATGTCTTGCAGTCTCGTTCTACATTTTGATTGTCGCTGTTA
AGCCGAAATTTACTGGTTATTTTGTGTCTTTATGAGAACCATATTAATTT
GTGTCTTTATGAGAACCATATTAAGTTCTTACTATTCTATCCACAATCAG
GGGATTCAGAATACGATGCCACAGCAGAAAAGCAAATACAAAACCTTTTG
CCAGACATTTTACATCAGTATGGTGTATTGGAAGTAGACGAAACATGGCA
TTCCAAACCAATGCATTTTGAAGATGCACGTCTCCAAAGGATCTGGCAAC
TTGCCATCGATGAAGGTGAATAAAATTCTCGTTCCAATAGGATTATTACT
TAGAATGAACACCTTAAGGGAAGGAGTTTTCGTGGGAAGAAATTTCGCGG
TTCACAGCTCAATAGAATTTTTTTCTTTACATTATGGGCCTATTTTACCC
TAAAATGACCAATTTTTAGAGGCGATTTTTTTAATCCTGAGAATGTTTGT
GTTTCGTGGAATTTAATTTAGCGGATTTGCCAAAAAACCGCGAAATTAAT
TTCCCTGAAAATTTGTTCCGCGAATATGTCCTCCCGAGAAAATTACTTCT
CTTAAGGTAAGTTACATGTTAAGAGTCAATTTAAGGAGAAGACCGACAAA
TGAGTTTGCTAAGGGTGCGAACTTCTTGATGTGACCTGCTAAAGGAGTTT
CACTGTGTACTGTCCAACCTAGGAGTTTCACTGTGTGCTGTCCAACTTAG
GAGTTTCATTGTGTACTGTCCAACCTAGGAGTTTCACTGTGGTGCTGTCC
GACTTTGGAGTTTCATTGTGTGCTGTCCAACCTAGGAGTTTCATTGTGTG
CTGTCCAACCTAGGAGTTTCACTGTTTGCTGTCCAACTTTGGAGTTTCAT
TGTGTACTGTCCAACTTTAGAGTTTCATTGTGTACTGTCCAACCTAGGAG
TTTCATTGTGTGCTGTCCAACCTAGGAGTTTCACTGTGTGCTGTCCAACT
TTGGAGTTTCATTGTGTACTGTCCAACCTAGGAGTTTCATTGTGCGCTGT
CCAACCTAGGAGTTTCATAGTGTGCTGTCCAACCTAAGATAACAACTGTT
TCTATGCACTACTTCTCATTATTACTGGCCAAAAAGATGGTGGTTAAAGG
TTTACTTGACCTACTTGACTTAAGTGCATAATCCCTCGAGGATCTTTGCA
CACTTCTTGGAGACAAACTCTTTCCACTTTTCTCTGTCACAGGCACGGCG
CTCAGCAGTAAGAAGTAGGATCCATGTGTCTTCTCGGATTAGATCGCTCC
ATCTTTGGGGGACGTCCACGAGGTCTTTTTTCCTTAAAATCACGGTTATA
AGCCTTGTGCACATAGTTGATATTGGGGTCTCTTCTCGTGATGTGACCAA
ACCAGTTCATTCTCTTCCTTTTGATCATATCAAGGATATCCATCTTGACA
CCAAGAGTACCCTTTAAATCTACTTAAATCTACAAGGCTTACTAACACTG
AGAAAACTTTTTATCACTTTCAGCGAATTACAATGGTGACGAGCTCCGAG
AATTGCACAACGAACTTCACGCCATGCAAAAAAAATTATCCAACTACATC
TGGACCGTTCGCCAACTAGAATCACTCAAAGAAAAAGAAAACAACGAAAC
AAATAATTACGTCAGCGATGACGTCATCGACAATTCGGTTGACGGAAAGG
CTGACGAGGAAGAGAAGACGAATGTGGAAAGTTTGAAATCGAAAGTGAAA
AATGAATTTGGGAGTTTGGACGAAGAAGTCTTTGCATTGAAAGATAAGGT
ACCAATATTTTTGGAATAAGAACTGGGGTATGTCGATTAGTTTATTCTTC
AGGTCGATATGTCTCCCAAATCTTAGCATGGAATTTAAAAACAGTGAAGC
TGAATGGAAAGAGTCAGGCCTTGGGAAACTATCGCAGGTCTTTTATAAAT
TGTTATTTAATCTGAAATATCGACTTGCTATTTTATTGAAATTCCAAATT
TAGAGAGTTTACCTTTTACCGCATTCACTCTCCCTTTGAAACGCAAAAAC
ATGATCGTGTAGTATTCTAATCAAAGATTATTGATTTATGGAACTTTCCA
GGTAGCGATGCGAATCAAACAAGACAAGTTAGGCGAACTGACGGACAGTC
GTGTCCGAGAATTGATGGAAAAAGCGAAAGAAATGATGCTGGAAAAGGAC
CTCCAAAAATTTAAGGTAATTAAGGCAGTCAGGCAGTAGCTTGGCAGGGG
GCTGGGGGGTTTGGGCAGTGCAGTGCCCCCCCCCCCCCCAGCGGCTGATT
TTTTTGGGGGCGCCAAAATACAAAGGGAGCAAAGAGACGCCTCTGATTAC
TAATTACGGTGCTCGCTTGCTCTTTTTCACCTAGATAGGGCGGTTTTCGG
CCTAAAAGAGAGAAAATATTCCTAAATTTTTGTTCTCACTTCGCTCGCGT
AATCTTTACATAGATATTTAGATTTCATAGGGGGTGCCTAATATAATTTA
AATCAAAATATTCGAAATTTGCCTCCCCATTTTGCCCGACTTTTTGTCGA
CCCACCACGCTACTGCAGTCAGAGTAAATCTGGAAATCTTTTCAAGTCGC
TTTAACAGACCTTCTATGCATTCTGATGGCAAATAGCTAACCATTTAAAC
TTATAGACCTTTCTAAGTGCTCTGGTACAGTTTGGATGATACGGGGCTGT
CTCATTTTAAATGAACAGAGGTTCAGCCATTATACGCGTAAGTCGTTTTT
TTAACGGAAACGTCTGAAAAAAAACTGGGATTTGACGAGTGTCAGTTACA
AGATCCGGCTTTTTTCAGGTTCTTCCGTTAAAAAATATGACGTTGTCTTG
CCTAACGTTTCTTCTTTTTCAGTCGGAGCTTGATCATTTTCAAAACCGTA
TCTCGAAGTTAGAACACTGGCGGAAAGTGAGTGAGAACTTGAGAAAACAT
TTGGAGGAAAACCAGTTCGAAAAAGAACTCGTAGATGAATACCAATTCTC
GAAAGCCAAAGTTAAAGAATTGACCAAGTTTGTGAGTAATACTCCTCTCC
CAGTACTTCCTTTCGCAGTACCTATTTCGCAGTTAATTCGAATTGCTTTG
AAACTCAAGCTATGTGACGACCTAGTTATTCAGTCAAAACATTCGAATCC
ACGTTGCCTTTTGCTTAAAAGCGACAGCGAAAGCGACTGGGTTCTAAAAT
TTATGTATTGTTTATGTATTGTGTATGTACGATTAACAGTTGATTTTGGC
GATTGTTTTTCACCTTTTTAAACAGTTTGCGCGTAGAAAAGGTTTCGAAC
ATTTTTTTGTCCTTTTATCAGCCAACCAATTATTTAATGAATTTAGATAT
TTTCCCCGACGTAACGTTACGAGAAGAGTTCTTTGTTTGAATGTTCATAT
CTTTCCAACCTCACCCTTAGGTAAAGAAGTACCACACCACATTGTACAAC
CGTCTCTACAAAAATTACAAGAATGAACTATGATTCGCCATAGCAAACCC
TTGAATCTACAAACCCTGTCAAGGTATATCGTTCTGTTGTTTTTCCTATT
TCCTACCTAACCTCGGCACACTTCTCAGCAAAAGCACGATATCTAGCCCT
TCGGGCTTTATAAATCTATGGTTCTCCCAAGCAAGACAAGTGAACACGAA
ACAGAAATGGACTTTCATAAACTGTAACAATTACCGTTTGGTGGTTTTTG
AATGACTTTTGATGCGGAACGAGCAGACCAAAATCTGATCGCTGTCGTAT
GAATCTTTAGAAAAAACATCAATTGTGAACATTTACCGCGAAAGATAATA
TTTTTCGATAACAATATATTTATAAAGTGTAAAAAAAAATTAAAAGGTGA
GAGCTTTAAAGAAGGATTTCGATATTAAGCAGAGATCCATTATTGTAGAG
ATTTATTAACCAGAGTTGATGTAAAATATATGCGCCAAATGCTTCTGCTC
TACCAAATGAAGAAGTATGATTTTAAAATAAGACACACCCGTGTGTGACC
ACTGTGCCAAATTTCATGTTTTTATCACAATTAGCACGATTTTTCTTTAA
AATGACCTCACTACACAATTTGCTTTACAGTATTTAAAGTTACTTGTTGT
TACATATTAAGAATTTTACAATAAGATTGAAAATGGACCCATTTGGATCA
GATGTGAACTGTCACTTAGGCTCATCCAATTGGGTTGTTGTCAACGATCC
GAACTATTAGGTCAACTTCAAGTTATCATTGTCGTTGAGAAATTGAAAGG
TTTCATTTCATTTTCATCGAAAGTTCTCTTGCTTTTTGTTTGATCTTTTG
AGGAGTCATACATCCAATGTCTCTCTCTAAATCGATCAGCTTAAATCCTG
CAATCACTCTACCAAAACTTTGTTCCCAAAACTCGTCAGATTTAGGACCC
TCCAAATACCAAGCAATAAATTCCCCATTTTTGATTTTGTCGTTACAAAT
GGTCGTCATTGAAAGATCCGTCATCGTTTCTACCGACTTGTCGATACGTT
CCCATGGAAACACAGCTTTTACAATACGACACTCTTCGTTAACGTAACCC
ATGACGTGATACGTGACTTGTAGATTATATAAACGCGTCGGCCCGTACGT
GACGTGCTCCCTGTACACCAGGCCACCTTCCGGTACTTCGAAAACCGGTG
AAGATGTCGCCACGACGGTTTTTGCAAAATATGTAAATGCTGTTTTACGT
ATTGGATCAAAGGAAGTGACGTGGGCCAACGTGTTTTCCATCTTTGTCCA
TGCATTTTGTTTCAATAGCGGTACACATTCGGGTGAATCAACGAGTTTAA
GGTCACCAGCATTCAATCCAAAAGCTTTTTCGATATCACTGACTAGAACG
TTATCTATGGACGCCATTTTGTGAAATAATCAATTGAAGCGCTACTTGGT
TTTGCTTTTTGCTTGTTTAATCCAGAGATTAAAAATTATAGCAGTTTAAA
GACAATTTCTACAAAAAATAAAAAATTTCTCCTTGCTCAAATCTCATAGT
GTTTTCTGCTATTGATGACATTGATAGCAAAGGAAAACCCGAGAGAAATA
CAGTCATTGTTTGGTTGAATAGCTACAGAGGAAAACCACAAAAGTTGAAA
ATAGTCGGTCGGGCAAAGCCGGACAAAAAACCCATTGACATAATTTATGC
CTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005720XLOC_005720Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010197-exon-sc0000103-1575043694:195833..196139TCONS_00010197-exon-sc0000103-1575043694:195833..196139Clytia hemisphaericaexon
TCONS_00010197-exon-sc0000103-1575043694:195025..195189TCONS_00010197-exon-sc0000103-1575043694:195025..195189Clytia hemisphaericaexon
TCONS_00010197-exon-sc0000103-1575043694:193542..193816TCONS_00010197-exon-sc0000103-1575043694:193542..193816Clytia hemisphaericaexon
TCONS_00010197-exon-sc0000103-1575043694:193125..193238TCONS_00010197-exon-sc0000103-1575043694:193125..193238Clytia hemisphaericaexon
TCONS_00010197-exon-sc0000103-1575043694:192309..192467TCONS_00010197-exon-sc0000103-1575043694:192309..192467Clytia hemisphaericaexon
TCONS_00010197-exon-sc0000103-1575043694:190186..191919TCONS_00010197-exon-sc0000103-1575043694:190186..191919Clytia hemisphaericaexon
TCONS_00010197-exon-sc0000103-1510915933:195833..196139TCONS_00010197-exon-sc0000103-1510915933:195833..196139Clytia hemisphaericaexon
TCONS_00010197-exon-sc0000103-1510915933:195025..195189TCONS_00010197-exon-sc0000103-1510915933:195025..195189Clytia hemisphaericaexon
TCONS_00010197-exon-sc0000103-1510915933:193542..193816TCONS_00010197-exon-sc0000103-1510915933:193542..193816Clytia hemisphaericaexon
TCONS_00010197-exon-sc0000103-1510915933:193125..193238TCONS_00010197-exon-sc0000103-1510915933:193125..193238Clytia hemisphaericaexon
TCONS_00010197-exon-sc0000103-1510915933:192309..192467TCONS_00010197-exon-sc0000103-1510915933:192309..192467Clytia hemisphaericaexon
TCONS_00010197-exon-sc0000103-1510915933:190186..191919TCONS_00010197-exon-sc0000103-1510915933:190186..191919Clytia hemisphaericaexon
TCONS_00010197-exon-sc0000103-1491911889:195833..196139TCONS_00010197-exon-sc0000103-1491911889:195833..196139Clytia hemisphaericaexon
TCONS_00010197-exon-sc0000103-1491911889:195025..195189TCONS_00010197-exon-sc0000103-1491911889:195025..195189Clytia hemisphaericaexon
TCONS_00010197-exon-sc0000103-1491911889:193542..193816TCONS_00010197-exon-sc0000103-1491911889:193542..193816Clytia hemisphaericaexon
TCONS_00010197-exon-sc0000103-1491911889:193125..193238TCONS_00010197-exon-sc0000103-1491911889:193125..193238Clytia hemisphaericaexon
TCONS_00010197-exon-sc0000103-1491911889:192309..192467TCONS_00010197-exon-sc0000103-1491911889:192309..192467Clytia hemisphaericaexon
TCONS_00010197-exon-sc0000103-1491911889:190186..191919TCONS_00010197-exon-sc0000103-1491911889:190186..191919Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000103supercontigsc0000103:190186..196139 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.92349	2.26343	0.782032	1.0522	0.307483	0.140271	0.222384	0.255311	0.167006	0.135957	0.335618	0.673229	0.783964	0.699046	0.677476	0.954747	2.09002	2.59825	0.274359	0.137402	8.7608	7.61289	3.87797	4.73352	9.16503	8.34088	0.501957	0.189969	0.844398	0.777041
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010197 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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