TCONS_00010190 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010190
Unique NameTCONS_00010190
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length811

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010190 ID=TCONS_00010190|Name=TCONS_00010190|organism=Clytia hemisphaerica|type=transcript|length=811bp
AAGAAACGACAGGATGAAAAGTCAACGGGTACCACAGTAGACAAACTGCC
GATTTCCAATACACGACCTGTTCAACTAAATCAACCAATCCCCGTCTCTG
CTGCTTCTCAGCTGTTTCAACTTCATAAAAGTCCGATGGAAGGTGTTTTC
AAAACCATAGCAAAGTTTAAACGACCGAACGGCGAAACACAGATCATCGT
CAATGCAAAAAATACATCCGCTCAAAGACAAGCGAACAAGTAAGATAATT
TTTAAGTATccaccgtagtgcagtggtagagtaTCAGGCTACGGTGCTCA
AGGTGATGGGTTCAATCCTCGTCCCCATCCCAAagaaaaatggtacttga
tgacTCTCAGCTCGCTGCTCAGTAATTAAGAGAAAGTTCAAAGGCAAATG
GACCAATCAAGGGAGAAAAAGTGCCGCCTTTGGATAGAtggctatcgaaa
gaggagccttcgggtcgcagACAGACAGACACGCATGCTCTTAGTTTCAT
AGCCCGAAGATCCATGATATGATTTCTCACATAAAAGTCTCTTTCACTTG
AACTGTAatatttccttaactcgaataacTCGTCCCTGCAGTTAACGATG
CTTTAAAAACCTTattctataactcgaaaaaaCTCTAACAAGtttcccgt
gcgtgttcgagttactgagactctactgtatttatAAGCTGACGGCAAAA
TAAATAGCATGGTCTTCAGAGCTAATAATtcgaaagtttcaaaatttcca
accaaAAGAATCGTCGATAAGATTCTGCTAATCAAACACGCCTTTTGTCT
CGGTGGTCACA
Run BLAST on NCBI

transcript from alignment at sc0000103:97628..98438-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010190 ID=TCONS_00010190|Name=TCONS_00010190|organism=Clytia hemisphaerica|type=transcript|length=811bp|location=Sequence derived from alignment at sc0000103:97628..98438- (Clytia hemisphaerica)
AAGAAACGACAGGATGAAAAGTCAACGGGTACCACAGTAGACAAACTGCC
GATTTCCAATACACGACCTGTTCAACTAAATCAACCAATCCCCGTCTCTG
CTGCTTCTCAGCTGTTTCAACTTCATAAAAGTCCGATGGAAGGTGTTTTC
AAAACCATAGCAAAGTTTAAACGACCGAACGGCGAAACACAGATCATCGT
CAATGCAAAAAATACATCCGCTCAAAGACAAGCGAACAAGTAAGATAATT
TTTAAGTATCCACCGTAGTGCAGTGGTAGAGTATCAGGCTACGGTGCTCA
AGGTGATGGGTTCAATCCTCGTCCCCATCCCAAAGAAAAATGGTACTTGA
TGACTCTCAGCTCGCTGCTCAGTAATTAAGAGAAAGTTCAAAGGCAAATG
GACCAATCAAGGGAGAAAAAGTGCCGCCTTTGGATAGATGGCTATCGAAA
GAGGAGCCTTCGGGTCGCAGACAGACAGACACGCATGCTCTTAGTTTCAT
AGCCCGAAGATCCATGATATGATTTCTCACATAAAAGTCTCTTTCACTTG
AACTGTAATATTTCCTTAACTCGAATAACTCGTCCCTGCAGTTAACGATG
CTTTAAAAACCTTATTCTATAACTCGAAAAAACTCTAACAAGTTTCCCGT
GCGTGTTCGAGTTACTGAGACTCTACTGTATTTATAAGCTGACGGCAAAA
TAAATAGCATGGTCTTCAGAGCTAATAATTCGAAAGTTTCAAAATTTCCA
ACCAAAAGAATCGTCGATAAGATTCTGCTAATCAAACACGCCTTTTGTCT
CGGTGGTCACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005715XLOC_005715Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010190-exon-sc0000103-1575043694:97628..98438TCONS_00010190-exon-sc0000103-1575043694:97628..98438Clytia hemisphaericaexon
TCONS_00010190-exon-sc0000103-1510915933:97628..98438TCONS_00010190-exon-sc0000103-1510915933:97628..98438Clytia hemisphaericaexon
TCONS_00010190-exon-sc0000103-1491911889:97628..98438TCONS_00010190-exon-sc0000103-1491911889:97628..98438Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000103supercontigsc0000103:97628..98438 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.333636	0.979231	0	0	0	0	0	0	0	0	0.0480432	0	0.100393	0.0359122	0.265445	0.0478912	0	0.196667	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010190 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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