TCONS_00010189 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010189
Unique NameTCONS_00010189
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1501

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010189 ID=TCONS_00010189|Name=TCONS_00010189|organism=Clytia hemisphaerica|type=transcript|length=1501bp
TCATCGTTCTAAAGAAAGCGAAAGAGATTTTACTGAAGGAAAAGAAGTCA
TCGGAAGACCTCGCATTGCAAGCCTCCCGGCTATCATTAAAAGTCATCGA
AAATCTGGTCAAGTTAGATCTCTTGCATGGAACACCGAAAGATGTGTGCT
GCCCAAACAAACAGCCGATCGAAAAAGCCATTCCTATCATTGAAAACAAT
TGTTATGAACCGAAAAACATTTCTATCGTTTTATCACAGATTTGTTGGAA
ATGTAGGAGGCTAGATGTTGACATTTTGTCATCGTTGTTTAAGGCAAAGA
ATGAACTGAGAGAAAAGAATTGGAGAAAGTTCAAATCATACAAGGATAAA
GCAGTGACCAAACAAACAATTGCGTCGAAATCAAAGCCTTCACAAATAAT
AAGATCACTTTCAAAAGACACGGCACCGAAAGAGGTCTGGGAATACAATA
CTTACGGAGAACCAATCAAAAAGAAGAGAAATAGCGGGAGTACCATTTCT
TCTGAACGGAATATTTGTTGGTATGAGCAACCAAAAGACGTGGTCATCTT
TAACCCCAATGATGTCATCAAATCAACAGAAGGAACGCCTGAATCTATAC
CCcacaatgaagaagaagaaggGATCAAGAAACGACAGGATGAAAAGTCA
ACGGGTACCACAGTAGACAAACTGCCGATTTCCAATACACGACCTGTTCA
ACTAAATCAACCAATCCCCGTCTCTGCTGCTTCTCAGCTGTTTCAACTTC
ATAAAAGTCCGATGGAAGGTGTTTTCAAAACCATAGCAAAGTTTAAACGA
CCGAACGGCGAAACACAGATCATCGTCAATGCAAAAAATACATCCGCTCA
AAGACAAGCGAACAATATCGTTTGGTTCACTCCTACAACAAAAGAAAGTC
ACGTGGTGTCCAAACCTCCTGAAAAAACAGAGGCGTGCGCATCACCATCA
ACTCAAGACTCATTCACATCGACAGCCATCAACGAAGCGCATGATTCGGT
CTGTCATCTCAAGATTGAAAACGTCAAATCGATAGCACTTGAAACTTCTT
CAAAAAATCCTCCTTCAAGCGAAATGAACAGTTCGATGTCACTTGAACCC
TTATCAAGAAATCCTCCTTCAAGCGAAAATATCAGTTCGATGGCACTTGA
AACCTCATCAAAAAGTCACCTTACaagtgaaatgaaaatttcaaatgatC
GAACACCAAGCCCAGATATCGTTGAAACCTCGGTCAAAAGCCTAATATCT
GGTCGTCCCGATTTGACCAATAGACCATCTGTAATCGTGGCAACCAAAGA
CAAAACAACTGCAAACACAGAATTGCTTTCCCTTGTCACTTCAGATAGCA
TCAATATTGGCAGTAAGTCTCAAGCAGTTACCACGACATGTATCCATGGC
AATGTGACCTCAGCTCATGTGACGTCATCTCTTGTGACGTCAACTCATGT
GACATCAACTTTCAATAGCATTGGAATATCCGATAATGACCATTCATCGA
C
Run BLAST on NCBI

transcript from alignment at sc0000103:96264..100246-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010189 ID=TCONS_00010189|Name=TCONS_00010189|organism=Clytia hemisphaerica|type=transcript|length=3983bp|location=Sequence derived from alignment at sc0000103:96264..100246- (Clytia hemisphaerica)
TCATCGTTCTAAAGAAAGCGAAAGAGATTTTACTGAAGGAAAAGAAGTCA
TCGGAAGACCTCGCATTGCAAGCCTCCCGGCTATCATTAAAAGTCATCGA
AAATCTGGTCAAGTTAGATCTCTTGCATGGAACACCGAAAGATGTGTGCT
GCCCAAACAAACAGCCGATCGAAAAAGCCATTCCTATCATTGAAAACAAT
TGTTATGAACCGAAAAACATTTCTATCGTTTTATCACAGATTTGTTGGAA
ATGTAGGAGGCTAGATGTTGACATTTTGTCATCGTTGTTTAAGGCAAAGA
ATGAACTGAGAGAAAAGAATTGGAGAAAGTTCAAATCATACAAGGTACAC
AGTATTGACCTTTATTGAGTTTTATTTGTCCTCCTATTCATGATATGCAC
CATTGCAATGTCTTCCACGGACCCAGCTGATTGGTCGAAAGTGATGTATT
GACTGATTTAACGTCACTTGCAACCAATCAGCTGTTGAGCCCGTGATGTA
ATGTCAGAAGACATTGCAATGGTTTATATTATGAATTGAGATAAATTCAT
CGCCCCGTTGATTTAAGAAACCATGACCGAGAGGGATGCCCATAATTTCG
GCTATCATCAACATGAGACTAGCATCATAGGATTCCAAATTGATACATGT
CATCTTGTGATGATCGCCGGTCGTGCACACCAAGAGTTGTGATAACAGAA
GTTTATTAGTTTCCAGGGTCTCCACTCCATTTTATGTTCAGCTCAGTTTA
TAGAGAGCCGAGTTGGCTTGTCATGTATTACTTAAAAAATAAAAATAATC
AAAAAAGTCAAAAAGTCCTAGATTACTGGGAGATCCACGTATATAACATC
GAACCTGTCTATCTTCCTTGATTGTCTCTCAGGTTCATGCTGCAATATAT
TCTTGCAAAAGTTGAGCTCGAAGTATGAAAATATGAAAAATTCATCACAA
CTTTCATTCGCTTCTTTCAGGATAAAGCAGTGACCAAACAAACAATTGCG
TCGAAATCAAAGCCTTCACAAATAATAAGATCACTTTCAAAAGACACGGC
ACCGAAAGAGGTCTGGGAATACAATACTTACGGAGAACCAATCAAAAAGA
AGAGAAATAGCGGGAGTACCATTTCTTCTGAACGGAATATTTGTTGGTAT
GAGCAACCAAAAGACGTGGTCATCTTTAACCCCAATGATGTCATCAAATC
AACAGAAGGAACGCCTGAATCTATACCCCACAATGAAGAAGAAGAAGGGT
GAGTTTTATTAATATTGTAGACTTAAAATTTTCTCCTTCAAACATCACCT
TGATCAATCACAACCTTTTTCTACCATAATTGCCAATTCAGCCTTACAAG
ACGCAATGTTTTGTGTCAAAAACTCTTCTGTCTCGACAAAATATATGAAG
TATATAAAAAGGTTTTTCCGTCCCTTCTGTTTCTGCATTATTCACCAAAG
TCTCAAGAATAATATGTGCTCATTTGCTTTGTAAACCAAGACCCTACGTA
CATGTGAAAAAGCTTTACTGCCTTACTATATGTAAGCTTAGGGAAATTCC
CCCATCCCTGAAGGTTTTGATTGAAATTTTACGTACATGTGAAAAAAGCT
TCAATAAAAACTTTACGTAATATCGGGGAAGTTCCAAAAAGACAGCCTTG
CCAACAATTTTCCGTAAGGTCTTCAGTAAGATTATGAATAAATGTGAAAA
AAGTTTCCACATGTAAAAAGCTTATGAACGGTTTTTCGTAAGCTCTGAAG
TAAGATTTTACGTTAATTTGAAATTTGCTAGTCTAAGTATCACTTTTTTT
CTAGGATCAAGAAACGACAGGATGAAAAGTCAACGGGTACCACAGTAGAC
AAACTGCCGATTTCCAATACACGACCTGTTCAACTAAATCAACCAATCCC
CGTCTCTGCTGCTTCTCAGCTGTTTCAACTTCATAAAAGTCCGATGGAAG
GTGTTTTCAAAACCATAGCAAAGTTTAAACGACCGAACGGCGAAACACAG
ATCATCGTCAATGCAAAAAATACATCCGCTCAAAGACAAGCGAACAAGTA
AGATAATTTTTAAGTATCCACCGTAGTGCAGTGGTAGAGTATCAGGCTAC
GGTGCTCAAGGTGATGGGTTCAATCCTCGTCCCCATCCCAAAGAAAAATG
GTACTTGATGACTCTCAGCTCGCTGCTCAGTAATTAAGAGAAAGTTCAAA
GGCAAATGGACCAATCAAGGGAGAAAAAGTGCCGCCTTTGGATAGATGGC
TATCGAAAGAGGAGCCTTCGGGTCGCAGACAGACAGACACGCATGCTCTT
AGTTTCATAGCCCGAAGATCCATGATATGATTTCTCACATAAAAGTCTCT
TTCACTTGAACTGTAATATTTCCTTAACTCGAATAACTCGTCCCTGCAGT
TAACGATGCTTTAAAAACCTTATTCTATAACTCGAAAAAACTCTAACAAG
TTTCCCGTGCGTGTTCGAGTTACTGAGACTCTACTGTATTTATAAGCTGA
CGGCAAAATAAATAGCATGGTCTTCAGAGCTAATAATTCGAAAGTTTCAA
AATTTCCAACCAAAAGAATCGTCGATAAGATTCTGCTAATCAAACACGCC
TTTTGTCTCGGTGGTCACACTCAATTTCGCAACAAAATTGTAAAACTTTT
CTCAGCGATAAAACAACTTCTTTTGTTGGCTCTGAGAATTGGACTCAAAT
TTTAGTGTTGTTAAAAGCAGTTTAACCAGGACGCGCGAAATAAACGGCCG
ATGGGAGATTGACCCAATCCTTTAGAGCTTAAGCGTTGGCGAAACAACAT
TACAATTCATTAGCTGATAACAAGAGGCGAGAGGTGGATTGAAGGCTCCT
CTTTCGATAGCTATCTATCTGAAGGTACTACGTTGGTGGACCACTCTTCC
GTGGATTGCATCTCTTATAATTTTGGTATTTTTTGGTATGAACCGGTCAG
TGAACAACCTATGACTGCTAACTTTAGTTGCGCGTTACATTACGCTGAAT
ATAATTGTCCATATTGGGCTTTTCCAGAAAAAATTTGAATATAGGGGGTG
AAGAATATAACATTCTTGGAAATTGACTTTTGACCCCCCGGACAGCAGGT
CTAACCCCTCAGACAAGCATCAGTTGACCCCTGGACATTCAAAATTACCC
TCAAACAGGGCAAAACTAACCCAAAACAGAGAAAATTTATCCCCCGGACA
AGGAAAATTTTGTAGATTTTTCACTACCCCCGGACACTATATTCTCCGAC
CCCACGTGCATGGGTACGGACATTTTCTGGAAGAGCGCATTGCTATTATT
TCACTACTTTGTAAAATATAACGCAAATATGCTATTCTTTTTTTCAGTAT
CGTTTGGTTCACTCCTACAACAAAAGAAAGTCACGTGGTGTCCAAACCTC
CTGAAAAAACAGAGGCGTGCGCATCACCATCAACTCAAGACTCATTCACA
TCGACAGCCATCAACGAAGCGCATGATTCGGTCTGTCATCTCAAGATTGA
AAACGTCAAATCGATAGCACTTGAAACTTCTTCAAAAAATCCTCCTTCAA
GCGAAATGAACAGTTCGATGTCACTTGAACCCTTATCAAGAAATCCTCCT
TCAAGCGAAAATATCAGTTCGATGGCACTTGAAACCTCATCAAAAAGTCA
CCTTACAAGTGAAATGAAAATTTCAAATGATCGAACACCAAGCCCAGATA
TCGTTGAAACCTCGGTCAAAAGCCTAATATCTGGTCGTCCCGATTTGACC
AATAGACCATCTGTAATCGTGGCAACCAAAGACAAAACAACTGCAAACAC
AGAATTGCTTTCCCTTGTCACTTCAGATAGCATCAATATTGGCAGTAAGT
CTCAAGCAGTTACCACGACATGTATCCATGGCAATGTGACCTCAGCTCAT
GTGACGTCATCTCTTGTGACGTCAACTCATGTGACATCAACTTTCAATAG
CATTGGAATATCCGATAATGACCATTCATCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005715XLOC_005715Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010189-exon-sc0000103-1575043694:99903..100246TCONS_00010189-exon-sc0000103-1575043694:99903..100246Clytia hemisphaericaexon
TCONS_00010189-exon-sc0000103-1575043694:98999..99276TCONS_00010189-exon-sc0000103-1575043694:98999..99276Clytia hemisphaericaexon
TCONS_00010189-exon-sc0000103-1575043694:98200..98442TCONS_00010189-exon-sc0000103-1575043694:98200..98442Clytia hemisphaericaexon
TCONS_00010189-exon-sc0000103-1575043694:96264..96899TCONS_00010189-exon-sc0000103-1575043694:96264..96899Clytia hemisphaericaexon
TCONS_00010189-exon-sc0000103-1510915933:99903..100246TCONS_00010189-exon-sc0000103-1510915933:99903..100246Clytia hemisphaericaexon
TCONS_00010189-exon-sc0000103-1510915933:98999..99276TCONS_00010189-exon-sc0000103-1510915933:98999..99276Clytia hemisphaericaexon
TCONS_00010189-exon-sc0000103-1510915933:98200..98442TCONS_00010189-exon-sc0000103-1510915933:98200..98442Clytia hemisphaericaexon
TCONS_00010189-exon-sc0000103-1510915933:96264..96899TCONS_00010189-exon-sc0000103-1510915933:96264..96899Clytia hemisphaericaexon
TCONS_00010189-exon-sc0000103-1491911889:99903..100246TCONS_00010189-exon-sc0000103-1491911889:99903..100246Clytia hemisphaericaexon
TCONS_00010189-exon-sc0000103-1491911889:98999..99276TCONS_00010189-exon-sc0000103-1491911889:98999..99276Clytia hemisphaericaexon
TCONS_00010189-exon-sc0000103-1491911889:98200..98442TCONS_00010189-exon-sc0000103-1491911889:98200..98442Clytia hemisphaericaexon
TCONS_00010189-exon-sc0000103-1491911889:96264..96899TCONS_00010189-exon-sc0000103-1491911889:96264..96899Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000103supercontigsc0000103:96264..100246 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.984172	0.549055	0	0.183531	0	0.187777	0	0.182279	0.0945664	0	0	0	0	0.183493	0	0.122323	0.240805	0	0.0373434	0.0986488	0.700723	0.270606	0.105429	0.0454847	0	0.0618689
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010189 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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