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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010179 ID=TCONS_00010179|Name=TCONS_00010179|organism=Clytia hemisphaerica|type=transcript|length=1952bp
CCCAGTCATATTACgagaacaaaagaattttaaaacatCGGTGTTTTTCT
TTGAACTTCAGTATTTTCTTTTGCGGTGTGTCGCAACTTAACAAATGACG
CAAGTTTCAATTATACTCAATGTGTGCATAGAGTTTAAAGTCCGGTGAAA
TATGCCTCACtaatcaaaacaatttaaaatcgTCTACTAGAAACATTACT
gacaaaaatgattatctttgttTGAGAACCCAAAACCTTTACCAAAATGC
CCATCATGTATGAAAAAGTTATTCCCAAAATCGAACCACTTGAATTGGGT
GGCAATATGACATCATTTCACGGCCACCCTGGGAACGCCCAAATGATGAC
CGCCCATCACGGAACGCCCATGCACATTTTACCCTCGCATCAGATGATTG
GATTACACTCACACCACCATCAGAATATGTCACCGGGTCCTCAAATGAAC
GGAATGCAACACCACGATGAAAACTCACCGATCTCCATGACAACTGTACA
GACTGCATCACCAGTTACAACCAACCAATCAGAGAGCGACAAAAAAGCAC
GTGATCATGTCAAGCGACCAATGAACGCTTTCATGGTTTGGTCACGTGAG
AAACGAAAGAAGATGTCGCAAATCAATCCCAGAATGCATAACTCagaaat
ctcaaaaattttggGTGCGGAATGGAAACGAATGACGGAGCAGGAAAAGG
GTCCTTACATCGAAGAAGCGAAACGACTTCAAACGCAACACAGTATCGAG
TACCCTAACTATAAATACAAACCGAGGAGACGCAAACCAAAAGCCATGAT
GAAGAAAGATAAAATGGGATACCCGTATGACGCCAATGGCGTGCCCGCTG
GAATGAAATTCCCTTACCCTTACGCGAACATTGCGACGTTCCCACAAGAC
GCCATGTACACACCCATCTATCAAATGCCTGGTGCACCCGCTGGCTACGC
AATGTACGCCGCTCCCGCTCCAACCGCTGTATCTACCGCTGACCAATCTC
GACAATCCATGGTATCGCCATCTGGACAAGCCCGCCATTCACCGCCCACC
TCCACCCCAGACTTCTATACCAGTATGGCTATCCAACCATCAAGCACCGT
TCGTTCGTCGTCCGCCGACCTTATGATGTCGGTGACGTCTCAAAACGATC
GCTACACGTCAATCAACACTACGCAAGGAAACGTTCAGTATACTTCCACG
CCTCCACTTCACATCCCGACCGCTGCGGAACCTGCCACCGGAAGTCCCGC
TTACACTCCAATGTACGGTGGCCAAAGACATTTATAAGCTTTCATGGGAG
GTTTTCCTGCTGTGATACTATCCGAAATCTTTACTTAGAACTTTTGCTAA
CTTTACTCTCATTTCAGACCTTTTAAATTTGGCGTACCCAAACAAGATGT
AACGTATTTTTGGtttaaattgtcattttttGAATGTATATACATAGAAG
AAAACGTATTACACAGATCGATATATTATTTATAATATGATAATAACACG
ATAATATAATATTCGTATATTTTATAACTTCAAATTGTGAAGTTAATGTA
AGAAGATTAGAGAAAAGGGCGCTGGAAATTTCCcccctttttatttttta
atatatattgatgaaaagaaaaagttatttttcaagGGACTAATTTCGAC
TAAATTTTAACTATTTTATTTAATCCAGATTGAATCTGTCGAAGAATTTA
AATATTGGTCTTATCTTTTGTTGCTGTTTCATCTTTTGAGTTGTGTATAA
TTATTTGTAGTTCAAAAAGATTATATGTATTGCATACTATGCGTATTATA
CTTATAGAGAGAAATTTATGTcaaaattgcatgtttttttatttcgtaTC
GTAACTACAACCCTGTATATAGTGTTTTTtaatttgttgaatttttcaaa
attcagaattattttttttctgaaactaAAATAATACATTCATACTCATA
TA Run BLAST on NCBI transcript from alignment at sc0000103:49960..53252- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010179 ID=TCONS_00010179|Name=TCONS_00010179|organism=Clytia hemisphaerica|type=transcript|length=3293bp|location=Sequence derived from alignment at sc0000103:49960..53252- (Clytia hemisphaerica)
CCCAGTCATATTACGAGAACAAAAGAATTTTAAAACATCGGTGTTTTTCT
TTGAACTTCAGTATTTTCTTTTGCGGTGTGTCGCAACTTAACAAATGACG
CAAGTTTCAATTATACTCAATGTGTGCATAGAGTTTAAAGTCCGGTGAAA
TATGCCTCACTAATCAAAACAATTTAAAATCGTCTACTAGAAACATTACT
GACAAAAATGATTATCTTTGTTTGAGGTAAGCTCCTTTGGATAGTTATAC
TTATGCAGCTCAGGCCTTTAGAAGGACTGCAATATTAATTTCACATTTGT
ATAAGTTCGAATACATAAATGCCCTGGGCGTTTATTGAATTCTTGGGTTT
TTAGACAGCGTTTCTTCGAGGGGGTTTTTATTTAAAGTAATACGGTATTC
AATTTCGAACTGTACACGGGTATTGACAAAAAAACCCTCTGGAAATTTAG
AGTAACAAATTGCCCCCTGGAAATTTGGGCTACAGTATCAAGAAAGGCCC
TGGAAATTAGAAGAACTGAGCCTCCCTGGAAAGTATCCTCGCATTTTAAA
TACATTTGTTGACCATCGTCTTAACGTAACAATTTTCTTCCTTCAGAACC
CAAAACCTTTACCAAAATGCCCATCATGTATGAAAAAGTTATTCCCAAAA
TCGAACCACTTGAATTGGGTGGCAATATGACATCATTTCACGGCCACCCT
GGGAACGCCCAAATGATGACCGCCCATCACGGAACGCCCATGCACATTTT
ACCCTCGCATCAGATGATTGGATTACACTCACACCACCATCAGAATATGT
CACCGGGTCCTCAAATGAACGGAATGCAACACCACGATGAAAACTCACCG
ATCTCCATGACAACTGTACAGGTAATTCATTTTTCTGTCTCCACTTACTC
TCAAAATAAAACTCTAAAGACGGGAGGAGGTTGGGTAAGAGATAACCAGG
AATAAATCACGTTAAACATGTGAAGTTTTTCAATCAATTTCCTCATAGAC
AAAAAAAATTCAGTTTTTCTTCTTGGTTTGGTAACTCGAACCTTTCACTT
TTTGGTGTTAAAAATGTTACCAAATTTCTGTCTATGTTGAACTGAAATCT
TAAGAAAAATGTCTCTTGCATCTCGCACTGTTTTCAGTTTCACTAAAATC
TAGTTTCCTTCCAAAGTTAAAAGTAAAGTCTTCAAATTTATGGTCAGATT
TGCACTTTCATTTTTCAATCATCCATGAACGAAACAAAAAAACAAAAACA
AGGATCTACTTTATATGACAATGACAAATATTCACATAGATTAACTTGAT
ACATGATAAAACTCATCAAACTTTATTGATTGGGCGTAGGGGCGGACAAG
TCACTTGATCATCCGATTAACAACTCTTACAAAGCTTTAATTAGTAGATT
TAACTAATTGAATCCATCAGTTTCCCTTCTGATTAAATAAAACAAAATCA
AATCAAACTAATTATAATACCTTATCTTTCTCAACCTTTCAAAAAGTCAA
TACTCTTTCTGATCAGCATTCATTTGATCACTTCATACTGAACTATCAAC
ACTGTCCGAATTTTCATTTTTTGTGTCCGAAAATTGAACACAATGACGAT
TGAGGATTTTTTATCGATTCACCATCATATCGAAAATATTGTACGTTATT
TGCTTGAATGAATATATTTTCTATTTTAAAGAATCTTGAGCCTTTTGAAC
ATCGAACTTGTACATTTGATCTTTAATATCAACGGCAGATACAGTTTTAG
CTTAATGAACCTTATCTAAAATGTACAACTTCCCTTCTTCATTGAAACTC
TGAGACATTATTTTAATGTTTTTGTCCCTTTCTTATTTACAGACTGCATC
ACCAGTTACAACCAACCAATCAGAGAGCGACAAAAAAGCACGTGATCATG
TCAAGCGACCAATGAACGCTTTCATGGTTTGGTCACGTGAGAAACGAAAG
AAGATGTCGCAAATCAATCCCAGAATGCATAACTCAGAAATCTCAAAAAT
TTTGGGTGCGGAATGGAAACGAATGACGGAGCAGGAAAAGGGTCCTTACA
TCGAAGAAGCGAAACGACTTCAAACGCAACACAGTATCGAGTACCCTAAC
TATAAATACAAACCGAGGAGACGCAAACCAAAAGCCATGATGAAGAAAGA
TAAAATGGGATACCCGTATGACGCCAATGGCGTGCCCGCTGGAATGAAAT
TCCCTTACCCTTACGCGAACATTGCGACGTTCCCACAAGACGCCATGTAC
ACACCCATCTATCAAATGCCTGGTGCACCCGCTGGCTACGCAATGTACGC
CGCTCCCGCTCCAACCGCTGTATCTACCGCTGACCAATCTCGACAATCCA
TGGTATCGCCATCTGGACAAGCCCGCCATTCACCGCCCACCTCCACCCCA
GACTTCTATACCAGTATGGCTATCCAACCATCAAGCACCGTTCGTTCGTC
GTCCGCCGACCTTATGATGTCGGTGACGTCTCAAAACGATCGCTACACGT
CAATCAACACTACGCAAGGAAACGTTCAGTATACTTCCACGCCTCCACTT
CACATCCCGACCGCTGCGGAACCTGCCACCGGAAGTCCCGCTTACACTCC
AATGTACGGTGGCCAAAGACATTTATAAGCTTTCATGGGAGGTTTTCCTG
CTGTGATACTATCCGAAATCTTTACTTAGAACTTTTGCTAACTTTACTCT
CATTTCAGACCTTTTAAATTTGGCGTACCCAAACAAGATGTAACGTATTT
TTGGTTTAAATTGTCATTTTTTGAATGTATATACATAGAAGAAAACGTAT
TACACAGATCGATATATTATTTATAATATGATAATAACACGATAATATAA
TATTCGTATATTTTATAACTTCAAATTGTGAAGTTAATGTAAGAAGATTA
GAGAAAAGGGCGCTGGAAATTTCCCCCCTTTTTATTTTTTAATATATATT
GATGAAAAGAAAAAGTTATTTTTCAAGGGACTAATTTCGACTAAATTTTA
ACTATTTTATTTAATCCAGATTGAATCTGTCGAAGAATTTAAATATTGGT
CTTATCTTTTGTTGCTGTTTCATCTTTTGAGTTGTGTATAATTATTTGTA
GTTCAAAAAGATTATATGTATTGCATACTATGCGTATTATACTTATAGAG
AGAAATTTATGTCAAAATTGCATGTTTTTTTATTTCGTATCGTAACTACA
ACCCTGTATATAGTGTTTTTTAATTTGTTGAATTTTTCAAAATTCAGAAT
TATTTTTTTTCTGAAACTAAAATAATACATTCATACTCATATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010179-exon-sc0000103-1575043694:53027..53252 | TCONS_00010179-exon-sc0000103-1575043694:53027..53252 | Clytia hemisphaerica | exon |
| TCONS_00010179-exon-sc0000103-1575043694:52382..52656 | TCONS_00010179-exon-sc0000103-1575043694:52382..52656 | Clytia hemisphaerica | exon |
| TCONS_00010179-exon-sc0000103-1575043694:49960..51410 | TCONS_00010179-exon-sc0000103-1575043694:49960..51410 | Clytia hemisphaerica | exon |
| TCONS_00010179-exon-sc0000103-1510915933:53027..53252 | TCONS_00010179-exon-sc0000103-1510915933:53027..53252 | Clytia hemisphaerica | exon |
| TCONS_00010179-exon-sc0000103-1510915933:52382..52656 | TCONS_00010179-exon-sc0000103-1510915933:52382..52656 | Clytia hemisphaerica | exon |
| TCONS_00010179-exon-sc0000103-1510915933:49960..51410 | TCONS_00010179-exon-sc0000103-1510915933:49960..51410 | Clytia hemisphaerica | exon |
| TCONS_00010179-exon-sc0000103-1491911889:53027..53252 | TCONS_00010179-exon-sc0000103-1491911889:53027..53252 | Clytia hemisphaerica | exon |
| TCONS_00010179-exon-sc0000103-1491911889:52382..52656 | TCONS_00010179-exon-sc0000103-1491911889:52382..52656 | Clytia hemisphaerica | exon |
| TCONS_00010179-exon-sc0000103-1491911889:49960..51410 | TCONS_00010179-exon-sc0000103-1491911889:49960..51410 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000103 | supercontig | sc0000103:49960..53252 - |
Blast
BLAST of TCONS_00010179 vs. Swiss-Prot (Human)
Match: SOX14 (Transcription factor SOX-14 OS=Homo sapiens GN=SOX14 PE=1 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 8.758e-27 Identity = 49/69 (71.01%), Postives = 58/69 (84.06%), Query Frame = 1
Query: 544 KARDHVKRPMNAFMVWSREKRKKMSQINPRMHNSEISKILGAEWKRMTEQEKGPYIEEAKRLQTQHSIE 750
K DH+KRPMNAFMVWSR +R+KM+Q NP+MHNSEISK LGAEWK ++E EK PYI+EAKRL+ QH E
Sbjct: 3 KPSDHIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKE 71
The following BLAST results are available for this feature:
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