|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010170 ID=TCONS_00010170|Name=TCONS_00010170|organism=Clytia hemisphaerica|type=transcript|length=1620bp
ACCTGAACTTTTCCACTTGCTTCATGGGCTCAATAATGAATTGATTGTGG
ATACAAACGaaaaggttgaaaaattcgACTCAAGATATTTGACTATGGTG
GAAGTTGAACATTCAAACTTTACAATGGACCTTATCAGTGGGAGTAAAAT
TAACACCCTACCTAAAACCATTCAAAATCAACAATGTCCTCTTTGTCGAA
AATCCTTTGCTTCTTCAGAAATTGAGAATCATGCATCAACCTGTGGAGAA
AAGAATCACATGGGTGGATTCAAAACATCAGAGAAAAAAGCTCTTTCCTT
ATCGTCTGGTATCTCGACCAAAGCCAGACAAGTTCATTCCAGAAGAGAAG
TACGCTGTCCTGTATGTAAAAAGTTTTTCGCGAGTTCAGATGTTGAGGAG
CATGCCATTCAGTGTGCTGATGAAAAATTTGCAAACACTGTTGTATGTGA
TGATGATGAGAGTACTTCTTGTTCAGATGGTGAAGACATTGGAATGGAGG
ACACTGAAGTAGCAATAACCATTAAAGATGTAATTTCTTCGTTGGCTATT
GATTTTAAAAGTGAAACATCAATTAGAATCAGACGAGGAAACTGTTTCAA
TGATTTCGTCGAAAAAAGGAGCTCACCGTTCATGAAGAGACAAAGCAAAA
ACAATGCATTAAGAATAATTTTTTACGGTGAACACGGCGTGGATCAAGGT
GGTGTACGAAGAGATTTCTCTACAGAAGCCATTCAAGAGATCAAAGACCA
ATTGTTTGTTAGCAAGGAAGATGGTATGCTGCCGAGTTGTACGATGACTT
AGCAAATGGCCTTTTCAGAAATGCGGGAAAGCTCTTTGCATATTCGATCT
GTGAAAATGGACCTGCGCCAAATTTTCTATCTCCTTGGGTCTATGATTAC
ATAGCTGGTGGTGTGGGTATGGTTCTCAACAGATTGCCAGAGAAAATAGA
AGATAAAACATACCAAAAGATCTATAAAATTCGAACAGAAGAAGAGCTGA
AGGATTTTTGTACATCAGATGAAGGCACCGATGTTCTATCAGAAATAAAA
TATCGAAGTGTACCAAGTTCAATAAAACTAAAATCAGAAGAATTTATTTT
AAGATCTCTATTTGCAAAATGGTTAAATCCCTACGTTCCTTTCATTCAAG
AAATTGCAATTGGTTTGGAGCAATATGGTTTTCTACAAAAGATAAAGGAA
CATCCTCAAAGCCTGAAAACCTTATTTTGTTTACATACTGATTTTGATTG
GACATTTGATGAGGTTTTTGAACTCCTGGAGCCCGATTTCAGCCCGGAAA
ACAATACTTACAGATATAAAGAAATCAACACTTTCAAAGCTTTGTCAGAC
GCTTTGTCAgattgttatgatttgaaaggtgaagaaaacgCTCTTACACT
TTCAGAAGTAATGAAGTTCATCACCGGTTGTTCTTCAAAACCAGCGTCTG
GGTTACCAGGGAAAATCACTGTGATATTTGAGAAATATTGTCCCGAAAAT
TGCAGATGTAAACCCACAACTTCTAGCTGCGATATTCAAATCGAAGTTGC
TTTGCGCTACACTACCAAACGTGACATGATGATAGCTTTAACAGATGCAT
GCCGCGAGAGTAAAGGAATG Run BLAST on NCBI transcript from alignment at sc0000103:256925..263986+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010170 ID=TCONS_00010170|Name=TCONS_00010170|organism=Clytia hemisphaerica|type=transcript|length=7062bp|location=Sequence derived from alignment at sc0000103:256925..263986+ (Clytia hemisphaerica)
ACCTGAACTTTTCCACTTGCTTCATGGGCTCAATAATGAATTGATTGTGG
ATACAAACGaaaaggttgaaaaattcgACTCAAGATATTTGACTATGGTG
GAAGTTGAACATTCAAACTTTACAATGGACCTTATCAGTGGGAGTAAAAT
TAACACCCTACCTAAAACCATTCAAAATCAACAATGTCCTCTTTGTCGAA
AATCCTTTGCTTCTTCAGAAATTGAGAATCATGCATCAACCTGTGGAGAA
AAGAATCACATGGGTGGATTCAAAACATCAGAGAAAAAAGCTCTTTCCTT
ATCGTCTGGTATCTCGACCAAAGCCAGACAAGTTCATTCCAGAAGAGAAG
TACGCTGTCCTGTATGTAAAAAGTTTTTCGCGAGTTCAGATGTTGAGGAG
CATGCCATTCAGTGTGCTGATGAAAAATTTGCAAACACTGTTGTATGTGA
TGATGATGAGAGTACTTCTTGTTCAGATGGTGAAGACATTGGAATGGAGG
ACACTGAAGTAGCAATAACCATTAAAGATGTAATTTCTTCGTTGGCTATT
GATTTTAAAAGTGAAACATCAATTAGAATCAGACGAGGAAACTGTTTCAA
TGATTTCGTCGAAAAAAGGAGCTCACCGTTCATGAAGAGACAAAGCAAAA
ACAATGCATTAAGAATAATTTTTTACGGTGAACACGGCGTGGATCAAGGT
GGTGTACGAAGAGATTTCTCTACAGGTAAGGAAACGATTTCNCGTGGATC
AAGGTGGTGTACGAAGAGATTTCTTTACAGGTAAGGAAACGATTTTAAtt
gtaattttaaaaattatcatcagaaatttttacttcactTACCTTTTGAT
TctgaattttaaaatcagattGTTGCAATGTGAGCCTTACACCATTTTGA
GAGAGAAAGTTGTAATTAGAAAGTTATAAAGCCAGAAGCCAAAGACTGGA
TTTTAAGCTTCTATTATACTCGGGAAGGGGTAAGTAAGTCAATAAAGAAT
CAAATCGAAAATTAATCGAATCAAttacttatttttcattttttgcaata
acgtTTTTTTAAGTGGTAGGTGTTACTTTTAATTTAACGTTGAATGAAAA
ATACGCACAATCTTGGTACCTTAATTCCCTTAATCTTCGCGCACTATGCC
ACGCGAACATTTAACTGATGCGCTAATTAGTGACCACTATTTTTGGCTAT
TTTGGCCTTTACATGAGCTTTGATGTAGTTCTAGCGATATTCATCAATCA
TTTTTGTACTCTTCGTTGGATTTGTTATGGTTAACCAtaacaaaaccata
aaaaaaaACCGTAATtgtgaaatttaatgttgatatttttcttccATCGG
CTTTATGTTTTTTGATGCTCCAAATTCATGGGTTTCCGTCTCAAGAAATT
GACCCTTTTGATGCAAAAGCATAGTTTTTCGTTCAGAAGAGAAAATGTAC
TTGTTACACTGAAGTAACTTATATAAAACATGACACAGTAAAGCTTATGT
CAGCAAATCTTAAAAACACTGAATGATATACATATACATACATGATGTAC
ATAGGTTAGTTTGcgcaaaatatataaataacagATTTTAAAGACGGACC
CAATTTTACCCTTAGTCCTCGTCTGTTATATTTCAGAAGCCATTCAAGAG
ATCAAAGACCAATTGTTTGTTAGCAAGGAAGATGGTATGCTGCCGAGTTG
TACGATGACTTAGCAAATGGCCTTTTCAGAAATGCGGGAAAGCTCTTTGC
ATATTCGATCTGTGAAAATGGACCTGCGCCAAATTTTCTATCTCCTTGGG
TCTATGATTACATAGCTGGTGGTGTGGGTATGGTTCTCAACAGATTGCCA
GAGAAAATAGAAGATAAAACATACCAAAAGGTTAGAACTGTTCAATATTG
TGTATATGTATCTTCATTGTTAACTCTACTGCTAACAATGCTAACAAAAG
TTCCTACGACGTTTATTTTAGAGGTTAAAGTATAATTATTTCGATAAAGA
CAAGTTATTACAAGATGAATGTTATAAAAGACAGAGCACTGTACTGGTCA
GTAAAATTAATATCGTGCAAATATCTTTGTTATTATTANAGGAAGATGGT
ATGCTGCCGAATATTGAGCTGTACGATGACTTAGCAAATGGCCTTTTCAG
AAATGCGGGAAAGCTCTTTGCATATTCGATCTGTGAAAATGGACCTGCGC
CAAATTTTCTATCTCCTTGGGTCTATGATTACATAGCTGGTGGTTTGGGT
ATGGTTCTCAACAGATTGCCAGAGAAAATAGAAGATAAAACATACCAAAA
GGTTAGAACTGTTCAATATTGTGTATATGTATCTTCATTGTTAACTCTAA
TGCTAACAATGCTAACAAAAGTTCCTACGACGTTTATTTTAGAGGTTAAA
GTATAATTATTTCGATAAAGACAAGTTATTACAAGatgaatgttaaaaaa
gacAGAGCACTGTACTGCTCAGTAAAATTAATATCGTGCAAATATCTTTG
TTATTATTCACATTGCGCTGGAGCTCTTATTTGAAGGCTAAAGCACTtga
tattttatcattttaaatctctttgatctTTTGTAATTTAAACTATACTT
GTTTACTTGAAATCATGTTTACTTGCTCCCAAAAACTgattaatttcaat
attttaaaggGTATGCTCGTGTTATGCATAAAAACGAATTTTGAATGAAC
GCCTCTGCTAGAGCTCTTTCCATACACCATCGTGCATCATACATGATAAA
TTGAACTACTTTTCAAATCTATACCCCCTGGTACAAGTAGAAAACCACCA
TGCAAAAATATTCACTTATTTCATTCTCGTCCCTGAATTACATGTGAATT
AATTACAGGTGTCCAATAATCAACCAAAAATTAGGGCCCCAATTTGGGCT
CCCTACCTTTTTGACCAAATCGTTTTAAAAAGggcaaattttaaaagttt
gaaaccTTAAAACGATCAATATcagatagagcatgaaatttatcaaatat
cAGAGTTTGGTAGGAAATTATTGTCCCATTTCCATTTATGTTTTTTGTTT
CTCCCTCTAGAAGACCTAGAAGTTATTAGAAAATATTCACTAGGTATTTA
TTAactaaaaattcttattttttcttactCAGATCTATAAAATTCGAACA
GAAGAAGAGCTGAAGGATTTTTGTACATCAGATGAAGGCACCGATGTTCT
ATCAGAAATAAAATATCGAAGTGTACCAAGTTCAATAAAACTAAAATCAG
AAGAATTTATTTTAAGGTAAGCAAAATCTAGATTTAAAGTGCAATTCCCT
TATAATCTGTTTTCCAcaaatttaagaatattcttTTTGATatctagatt
tttattttttgaataaattttcttgTAGCTTCTTGTTACTTCACGATTCT
TAAGTTTCAGGGAAATTAGGATCAAACAGGGAACTTGAAGCAAATATGTT
AAGTAGAGTTTTAGTTTTGAATTCTTTAGCCTTCTAGTGTAGAACAAGCT
AGTTTGCGTCTTAATAAGAgacatttatataaaaaattaggCAAAATCAG
GTGGGCTGAGGCAGAGTTTGCTTATTTTGGATATTTATCCCGCTATATGC
AAATAAGGAAcatgtcaagaatttttcatgAGCTATCGCCCCCTAAAATT
TGAGATAATTTGCCCGAAAAATGCACTTCAGGTAACTCGAGACCAATAta
gaagaaattgaaattctGTTTAAAAGTTTATACATCTAAttatatatcaa
aatcaaattccaCAAAAACGTTTCCTCATGAAAAACTATAAAGTTCCACG
CAACTGAACTCTTTGAATCCTTTTATCAGCTGACAAAATGTTTATCTATA
GCTTTCATGTCAAATTAGTAAGTTTGTTATTGTTCGCTAGACAAGGCAAG
GACCCCTTTGGATTTATCATTTCCTCTTTTTACTTTAGATCTCTATTTGC
AAAATGGTTAAATCCCTACGTTCCTTTCATTCAAGAAATTGCAATTGGTT
TGGAGCAATATGGTTTTCTACAAAAGATAAAGGAACATCCTCAAAGCCTG
AAAACCTTATTTTGTTTACATACTGATTTTGATTGGACATTTGATGAGGT
TTTTGAACTCCTGGAGCCCGATTTCAGCCCGGAAAACAATACTTACAGAT
ATAAAGAAATCAACACTTTCAAAGCTTTGTCAGACGCTTTGTCAgattgt
tatgatttgaaagGTAATTTTTAATTTCGGTTTGTGCAGAAAAAGAGGGC
AAAAAGCCGACTTTAAGGACTTTAAGGTTTTTAATGGTTTCAGAAAAGAT
ATCTATACCTCAATGGGCttaaaaattaggaaaaaatggCTCAGTTAGCc
gaaagtatttcaaaatgctACCTGTTGGCATTTCTTTTGGTGTAATTAGC
TGTCAATTAAATGctattaactctttttgtaaaaaagttaaacctacagc
acctgaccccgagaatgtaggtgaaatttgaatcagacctgagagatgta
gatttgcatttaaaaaaatattttttatttatNcagcgggtctgggacac
gtcgtaaaagcttaaaatgccaacattaattatctctcaggtaatacttt
catgttatgaaagtacaacaaaaaaagtttatataatttgacagactttt
taagTCGGGTTACGNtgaactcccaaaatcctttcccaggggttagtttc
attacttttgatagataggctaatttttttggtccttgaagttgactccc
attttcattataacccccagaattttatggctttaaatctagtaatagta
aaatgttgatattttttcgattgaattaattataacaggaaattttagaa
atatttgatgccaaaacaatattctaaagagcttttgttattctgaaaat
tgcattttttcgctttttaacccccataatgtaggtgaaaagattcgatt
gctgagagcgaaatttcagtattcatcggaaatttttgttctctaagtga
aattcatactttagaaatatactctgacaNtaccctatcatcataactta
attccaatagatttcgatttagagaggatttatttaaaaaatgtctcaat
tcgagtagtatccaatcaactttgattcagattttcgcctgaaaaaatca
attcaagttaaaattttatgtctagaaataatcagtaatatgtaatagta
tgctctgaaacaactttttatgaagttgaactatcgttagggctaccatg
ctaaaaaatgagaaacctacattctcgggttttactacattctcggggtc
aggtgctgtatatACCATCTTAAAGAAGTTAATTAAACTACCAAAAAACA
TAATTATGGCCAATTGGATTTTATTCATTGTTTTCAGAACCCTTTTTTGA
CTTTGAAGccgattttctcaaaaagtaATCCTTTTAAAGACAAAGTGAGA
CATGTTTTTCGGCTCAGCCTTTCTTCTTTACAATGATGTAATTCTCAAAT
TCACCAATCAAAACGTGTACGTACGTTAACTCTCTGAAAATAGTTGgtat
tgaattttttagaaaaaaattatgatccTAATTGTACTAAACTCTTATCC
AATTTGCcattgaaagatttttgttaTACTGTTAAAAGAGACAAAACAAA
ATTCTTTATTTACATGAGAGGGCCTGAATGTACACGACTAGATGTAGATC
CATAAtggcaaattttaattttgatgcgTCCTATTGTATGCCCTATATGT
AATTGTATGGCAATCATTCAGAACTTTTCTCTTGCTCACTTTTGATATGT
AAACATTGGATCTAAAAACATTTCTACAACGAGATTTATAGGAaacagct
gcccccccccctaaacgaaaatctttgataatttttgaaagacTTGTCCA
ATCGACATGAAATTTTCTCAGTGTGTACCAAATATGGATTGGCATCTTCA
GTAAAAGCTCCGGcatcatcgatgacgtcattaccacctgatgacgtcat
taaaaatgCCACAAATTGGAACCCCTTTTAACTATATTTCTTACTCAAAT
TTTGTGTGGCAACTCCATACGACATATAACTTTGGggggtcatttttttg
ccacCTGAGTATTTACAGACCGGCCTAAAAGAGCCTTTTTAGCCTAAATT
CGGACTTAACATTCTCAGGATTGAGAAATGGTAAGATCTTGATTTTGACC
AGTGGTTAGGAATTGATTATAGAAGCTTGCTGCCTTAATTTCAACGAAAT
CGGACATGTGGTTGTCCagaaagtgagcattttaggtAAATTATTGACTG
TTCTCTAAAATAGGAACCACGCAGGTGGcttacttgaaattttccacATT
CCTCAGATGGTCAGTCAATGCCTATCACTCGTCAAAATTTCGGTAGTTCA
TGAGTTCCGGAGGGGGGCTATGTGTATTttgcagaccggtctgtaaagtA
TTAAATATCAATgggacaaaattttgttggtcaCTTGTTGCACTTGTTAC
TTTTAgttgaaaaattatgattttagcCAATTTGACGTTCTtatctgtaa
aataccaaccaaacaggtcaacttgaaattttgcaagtcATCCCGTTTGT
CTTTTCAAGTCATCAGCATTTTATAGATATTGAGATTTCAGACCCAACCC
TCCCCCAAAATGCTTCCTCTATTAAAAATATAAGAAGATGCATGAAAGGT
TAACCCTCTCCCTTGTCAAATCCCTCAATTTTCTCATCGGTTCTTCTCAG
GCCTTAGTTGTGTATACTTTGctttcatataaaaatatatcttttCACAA
TTCTTGTCATTacattttaggtgaagaaaacgCTCTTACACTTTCAGAAG
TAATGAAGTTCATCACCGGTTGTTCTTCAAAACCAGCGTCTGGGTTACCA
GGGAAAATCACTGTGATATTTGAGAAATATTGTCCCGAAAATTGCAGATG
TAAACCCACAACTTCTAGCTGCGATATTCAAATCGAAGTTGCTTTGCGCT
ACACTACCAAACGTGACATGATGATAGCTTTAACAGATGCATGCCGCGAG
AGTAAAGGAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010170-exon-sc0000103-1491911889:256925..257649 | TCONS_00010170-exon-sc0000103-1491911889:256925..257649 | Clytia hemisphaerica | exon |
| TCONS_00010170-exon-sc0000103-1510915933:256925..257649 | TCONS_00010170-exon-sc0000103-1510915933:256925..257649 | Clytia hemisphaerica | exon |
| TCONS_00010170-exon-sc0000103-1575043694:256925..257649 | TCONS_00010170-exon-sc0000103-1575043694:256925..257649 | Clytia hemisphaerica | exon |
| TCONS_00010170-exon-sc0000103-1491911889:258561..258804 | TCONS_00010170-exon-sc0000103-1491911889:258561..258804 | Clytia hemisphaerica | exon |
| TCONS_00010170-exon-sc0000103-1510915933:258561..258804 | TCONS_00010170-exon-sc0000103-1510915933:258561..258804 | Clytia hemisphaerica | exon |
| TCONS_00010170-exon-sc0000103-1575043694:258561..258804 | TCONS_00010170-exon-sc0000103-1575043694:258561..258804 | Clytia hemisphaerica | exon |
| TCONS_00010170-exon-sc0000103-1491911889:260057..260190 | TCONS_00010170-exon-sc0000103-1491911889:260057..260190 | Clytia hemisphaerica | exon |
| TCONS_00010170-exon-sc0000103-1510915933:260057..260190 | TCONS_00010170-exon-sc0000103-1510915933:260057..260190 | Clytia hemisphaerica | exon |
| TCONS_00010170-exon-sc0000103-1575043694:260057..260190 | TCONS_00010170-exon-sc0000103-1575043694:260057..260190 | Clytia hemisphaerica | exon |
| TCONS_00010170-exon-sc0000103-1491911889:260863..261137 | TCONS_00010170-exon-sc0000103-1491911889:260863..261137 | Clytia hemisphaerica | exon |
| TCONS_00010170-exon-sc0000103-1510915933:260863..261137 | TCONS_00010170-exon-sc0000103-1510915933:260863..261137 | Clytia hemisphaerica | exon |
| TCONS_00010170-exon-sc0000103-1575043694:260863..261137 | TCONS_00010170-exon-sc0000103-1575043694:260863..261137 | Clytia hemisphaerica | exon |
| TCONS_00010170-exon-sc0000103-1491911889:263745..263986 | TCONS_00010170-exon-sc0000103-1491911889:263745..263986 | Clytia hemisphaerica | exon |
| TCONS_00010170-exon-sc0000103-1510915933:263745..263986 | TCONS_00010170-exon-sc0000103-1510915933:263745..263986 | Clytia hemisphaerica | exon |
| TCONS_00010170-exon-sc0000103-1575043694:263745..263986 | TCONS_00010170-exon-sc0000103-1575043694:263745..263986 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000103 | supercontig | sc0000103:256925..263986 + |
Blast
The following BLAST results are available for this feature:
|
