TCONS_00010159 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010159
Unique NameTCONS_00010159
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1822

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010159 ID=TCONS_00010159|Name=TCONS_00010159|organism=Clytia hemisphaerica|type=transcript|length=1822bp
aaaaatagaaatcaaatataaacaCATACCTTAGACAGAACACACCGACA
AAACATCCGCACATATCCATGGCTGAAACATAAAATACATATTACACGAT
ATATTAGAACACACAAAATGTCTTTCGCTTCGTGCTACAATGACACCAAA
TCGTTCTCAAGCTTGGACCTGCTTTATGCTGTTTACAGgGCGCGTGGGCG
TGGGGGAATGAACTTGGGACCGGGCGGAATTTCCGCAAACTTTAACACTG
ACAACTCAACATATCAAATCAACGCAAACAATACACGTAATCACAACATG
GGCGGGAATGGGCGTAAAGGCGCCATGAATATGAATGGAGGGCGCAGAAT
GGGCGTTAATAGGATGACAGTAGCAAACAGCAAAACAGGACACAGCGTAC
ATATGAGagGGCTTCCGTTTGAATCGACAGctgctgacgtcatcaggtTT
TTCGCACCTTTACAGCCAGTAGATATTCGATTGTTGTACGAGTCAAACAC
AGGTCGGCCAAAGGGAGAGTGCGATGTCGATTTCACAACCCACCATGATG
CAGAGGAGGCtatgaaaaaagataaacaaaatatGGGACACCGATACATT
GAATTGTTCTTGAAATCCACAATCCATGGCAACGGGAAATGGAACAATAA
CAATAACATCATCGGAAAAAaTTAAAAATTCTTTAGGTTCTCCTCCGTTG
CTTCTCTCCCATAACAACAACAATCGCTCCTCCATCATTCAACAACCAAA
CCTAAATAACATCTACGCTGGAGGCTTCAACAtcacaaaacaacaacaaa
caaccAATCAGAATCGATTTAACACTAATTCCTTACCTCCCATTGGTTGT
AATTTCAATAACAACACTCCTTCGTCGTTGGGATTTGTTCGAAAACCTCC
TCCTCCTCCCTCCTCCGTGGATCCTTTTGGAGCGAACCGAGTGACACGTG
AtgatttgaatttcaaagataCATCACGTGATCTAGACTTGTTGAGTCGG
ACGATCCATAATGGCAGCCAAACTATTCAAAATGGTTGCAAAAGTAATGG
GGTTCAAAGTTTTTATAGCAATGCGATTATATAATAGGGTGTGACTTgat
tttgaattcaattttttgattatGGTCAGAAGAATTTTGTGTATATTTTA
TTAAAGGTGTGAATTTTCtgtttgtttatttaattttttatgcatttgaa
attattattttttaaatgatgaaaaagaaTATTTGGGATTTTTTTATTAG
GCTTTcatgattatttttttgtggttttttttGGAGAAATAATTTTGGGA
GTGTATATAAagtatattttaatttttattcagtttttgaattcttttga
gGGATAAATAGGAGATCAAACTAAAGAAGGACTTGTGAACAAAAGCCAGT
AGGAgcaatttttgtttgaatacCTTTGTTCTTGGTAAGTGTTAGCTAAG
CCTCGATTGCTAATCTTAATTTTGTTTGACttgcttaaaggttttgtttt
tatataagagtgatatcgtttgcttactcgtcaattttaatttataagct
tttttgcattgaatttacacggatgtggagcaagattggtcagaaagagg
gaaagaaaaacattttttgcttatatcagcacaatataataATAGACAGT
GTCTGCCTAATATGaaactgatatgaaacatgtgtctgatatgaaacggg
gacactaatgtaaaaataaaacctttaagagtTCTAGAAATGGCTTTAAG
ATGTTCTAGACAATAGTTTGGTCAAACTGAAAACGTTGAATgaaatttac
tttttatttttggatgAAGGAC
Run BLAST on NCBI

transcript from alignment at sc0000103:16908..23572+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010159 ID=TCONS_00010159|Name=TCONS_00010159|organism=Clytia hemisphaerica|type=transcript|length=6665bp|location=Sequence derived from alignment at sc0000103:16908..23572+ (Clytia hemisphaerica)
aaaaatagaaatcaaatataaacaCATACCTTAGACAGAACACACCGACA
AAACATCCGCACATATCCATGGCTGAAACATAAAATACATATTACACGAT
ATATTAGAACACACAAAATGTCTTTCGCTTCGTGCTACAATGACACCAAA
TCGTTCTCAAGCTTGGACCTGCTTTATGCTGTTTACAGGTAAATAGAGCG
GTACCAAGAATAACTAGCAGGTCAATGATTGCGGGATAACAGTTTGAAAT
AAGCTCAATATCCCTTAACGAGAAACTAGCGAGTtcatctacacgttttt
ttaaagaacaaactatataagaacataaggcttaaatggccaaaatgtta
agaacaagttaagaacattttaaggctttgtcgACTCAAAAACGCCCAAT
TTCTTAGGACTATACtcaaaaaataacgaaaataagAACCCAAAAATGAC
GAaaacaagaacatgttaagaacactttaaggctaaaagctcaaaaagtt
aagaacatctgaaggcttcaaataatttggatgttcttataaaaaacgtg
tatcacgTATAGGGGAGAGATAGATAGCTTTTCATTCGCTTATAtcctaa
aaaaaatttccacccaggacattcttattccaaccccccccccccccccN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccccccccgctt
attccaaaccccacggctattaggtacccgagagtacataAACTCGCTGC
TCTATCGGGGGAGTATAGAAATTGttaatttttgttaatttattcatatt
ttcttttcattttaggGCGCGTGGGCGTGGGGGAATGAACTTGGGACCGG
GCGGAATTTCCGCAAACTTTAACACTGACAACTCAACATATCAAATCAAC
GCAAACAATACACGTAATCACAACATGGGCGGGAATGGGCGTAAAGGCGC
CATGAATATGAATGGAGGGCGCAGAATGGGCGTTAATAGGATGACAGTAG
CAAACAGCAAAACAGGACACAGCGTACATATGAGaggtaaaaaagtgaaa
aatctgTCTCTGCTTGTCTCTGACtgtctcgttttgaaaccattaccaag
gtgataaagcccttgagacttcaaatgttactttaataAATTGGAGCAaa
cttcttatgaactcctctcggaatcaattaccatagcaatattttggtAA
GGTAAGCGTTTCCCATGActtaatttatcaaaaagtctatCAATTTTTTA
CCAAGAACCTGTTTaacaatttttgctcaaaagcATGTGCCAAGACCATA
TGATAAATTTAGCTTGCCTAAGTATAACTTACATTTATTTTTATTCCGTA
GGGCTTCCGTTTGAATCGACAGctgctgacgtcatcaggtTTTTCGCACC
TTTACAGCCAGTAGATATTCGATTGTTGTACGAGTCAAACACAGGTACTG
GattgttttttcaaattcaacaaatggCTTGCTTTAGATCTGGTAAAAAG
AATgtaaaatttgaccaacttttgattttgacataAATGGAAGAAATAGG
AACAAGGGGagaaaatgggtgccgggtatctGTGAACCTTACCAGGTCTG
TCCAAGGGTTCAAAAAACACATCAAGTTGGTCTTTCTGGGGTCTTGTCAG
GCTGGCAGCATCCTtctggtttgttttgaaaaccattTAAGGGATGTGTA
CAGCTTAAGGTCTAGCCCGCACATAACCAACATTTTCCACCTCATGAAAA
TATAGTAATAATAGTCAAAGGTGGTTTCCAATAGGGATAATAGTTTTGTG
AACAAGTTTGTGCATCAAGTGGCATATCATTGTGAGATCAAAGAATTCAT
CTTATCatacaaagtaaaaaaataagcaaaaaatatggAATGGACGAATT
ATACAAACTGATaccgtaacaattatcgtattatcatttAACATCCACAT
GACTGtgttgggctattccagaaatagccTGTACctcagggtggtctgga
aaataaaaaatccaggatggtcagtataacgaggtcgaaaatccagggtg
gtccgaagaaatgggagaaaaaaatccaaggggtcctgaaaatttgggaa
aaaatccagggggggtcaacaaatttttttctggaatagcccattataAG
GTTTacaaacgactccagtctacttaAGCTTGAATATATAATACCTTTTT
GAAATTCTCGTCCATTTTTGTGATGTTTAGGTCGGCCAAAGGGAGAGTGC
GATGTCGATTTCACAACCCACCATGATGCAGAGGAGGCtatgaaaaaaga
taaacaaaatatGGGTAAGTGTGTAATTTACTGACCAGAATGGAAGGCGA
AATTAAGAGACCAGAAATCAGCTATCATGATGATCTGACACTGGAAGCTA
GCTAATGATCCTTATTAAAAGAATGTACacactttttttgtaagaatggt
gtaaatccattgcatcatggatattcttaactttttagtcAAAGTCATTA
TATAATATTGTTAACATAAATGGCAatattcttacgatgttcttaatttt
ttggctattttcatcatggacattcttataaagtgtatttttataaaaaa
gcataGTACAATAGTACAATACCGTAaattcaatagacgatatcggcttt
ccgaattctccccgaatgattacccatgatgcattgcgcaaaaaaattca
cggacgatattgacttgatgaatttttttgcgcaatgcatcatgggtaat
cattcggggagaattcggaaagccgatatcgtctattggagACAAATTAT
TAAAAGCACCGTTTACAACTTCTGGAATTcttgattgaaattttcatttt
tgctgcttatgaaaaccaaactaaaggccggtctccactttcgcgcgaca
taaTCGAAAACTCTTTGGCGTtgttgtaaggtcattggtcggttgaaaaa
tgaagcaattccattggtcgaaattgacgtaacggatgaaaaaagtagaa
cttcattcaacttttcttttgttcgcgcgaaacttttttatgacgtaatc
tttcaggcaaaaaagattaagaaaaaaactgtcgcccatttcgcgcgaaa
gtggagaccggccttaacgcATCTCTTGATACAGTTTCCACAACGTTAAA
TTAATAAGCAGTcttaaattatgaaaaacaatgTCGAAATCCTTCTGAGG
TTATATTAACACCTGCCAGTAGAGAGTTCATgcatttgcacttttgagga
cggctgagtgactgaagcgatttggaaaatcCGCATTTTTCACCCACAAA
ATCGaagacggtaaaagtgcttgtttaccgtcgtcctcagtcagacGGGA
TGTAGATAAATTAGAAGCTTACCACAGGTATATAAACTCGCTTTtgttcg
aagtaatacggtaatatAGTTCTCATTAATGACTTCTTCGCTTCTTTGTT
GGCATTTATTTACTTAAGAGCTCTTAGTAATTCATGAGATATACCCCTTT
CCAAAACTCGGGATAATATGAAAGGGCTAAATGGGCTAAATCTCTTATTT
GAAATGGGTGGAAATAATTCGAATTCTCTGTTTAGCGAGTTTATGCATTT
GCAATTTTGAGGACGGCGGAGTGACTGAAGTGATTTGGAAAATCTAACTG
TTCTGACCCGcgaaatcgaggacggtaaaagtgctgatttaccgtcgtca
tCAGGTGATCAGGATCTAAACAAATCAGAAGTTAACTATCTCCACCGTAG
AAAAGCAAAGATATAAACCTAGCTAATTTGTAGCGACACGACTGAAATCG
TAgactatttttcttttgatttctttcctCCAGGACACCGATACATTGAA
TTGTTCTTGAAATCCACAATCCATGGCAACGGGAAATGGAACAATAACAA
TAACATCATCGGAAAAAGTAAGTAGTATTccacttgaaaatttctttcca
aCTTATTTTCATTGAATGAACACGTGGAGAAAATCAGTACACGAGGCCAT
TTTCGAGTAAATTTCGGTCTATTCAGATTCCAAAGGCTCCCCGTTTTTTA
CTCACGATAATAAAAGTAAGAATTAGGTAACTTTCGCACATTATATTACG
ACTGCTTGCGGAACGTGAATGCCTTGAAAATAATGCACCCCTTTTGAAAC
AAAAACTTGAAGGAAAGCAATCCAAGCTTTTGATATTCAAACAGGACAGG
ACAAGAATGGGCTTAAAGTGTAGAATGATCTTTAGAGGGGAATTTTTACA
AGAGATGTAACATAACATGGCTCAGTTCATTCAAAAAAGGACAGTTAGCT
AAGTTCGGActcttttatcattttcagaTTAAAAATTCTTTAGGTTCTCC
TCCGTTGCTTCTCTCCCATAACAACAACAATCGCTCCTCCATCATTCAAC
AACCAAACCTAAATAACATCTACGCTGGAGGCTTCAACAtcacaaaacaa
caacaaacaaccAATCAGAATCGATTTAACACTAATTCCTTACCTCCCAT
TGGTTGTAATTTCAATAACAACACTCCTTCGTCGTTGGGATTTGTTCGAA
AACCTCCTCCTCCTCCCTCCTCCGTGGATCCTTTTGGAGCGAACCGAGTG
ACACGTGAtgatttgaatttcaaagataCATCACGTGATCTAGACTTGTT
GAGTCAGACGATCCATAATGGCAGCCAAACTATTCAAAATGGTTGCAAAA
GTAATGGGGTTCAAAGTTTTTATAGCAATGCGATTATATAATAGGGTGTG
ACTTgattttgaattcaattttttggtTATGGTCAGAAGAATTTTGTGTA
TATTTTATTAAAGGTGTGAATTTTCtgtttgtttatttaattttttatgc
atttgaaattattattttttaaatgatgaaaaagaaTATTTGGGATTTTT
TTATTNTTCTTTCCTCCAGGACACCGATACATTGAATTGTTCTTGAAATC
CACAATCCATGGCAACGGGAAATGGAACAATAACAATAACATCATCGGAA
AAAGTAAGTAGTATTccacttgaaaatttctttccaaCTTATTTTCATTG
AATGAACACGTGGAGAAAATCAGTACACGAGGCCATTTTCGAGTAAATTT
CGGTCTATTCAGATTCCAAAGGCTCCCCGTTTTTTACTCACGATAATAAA
AGTAAGAATTAGGTAACTTTCGCACATTATATTACGACTGCTTGCGGAAC
GTGAATGCCTTGAAAATAATGCACCCCTTTTGAAACAAAAACTTGAAGGA
AAGCAATCCAAGCTTTTGATATTCAAACAGGACAGGACAAGAATGGGCTT
AAAGTGTAGAATGATCTTTAGAGGGGAATTTTTACAAGAGATGTAACATA
ACATGGCTCAGTTCATTCAAAAAAGGACAGTTAGCTAAGTTCGGActctt
ttatcattttcagaTTAAAAATTCTTTAGGTTCTCCTCCGTTGCTTCTCT
CCCATAACAACAACAATCGCTCCTCCATCATTCAACAACCAAACCTAAAT
AACATCTACGCTGGAGGCTTCAACAtcacaaaacaacaacaaacaaccAA
TCAGAATCGATTTAACACTAATTCCTTACCTCCCATTGGTTGTAATTTCA
ATAACAACACTCCTTCGTCGTTGGGATTTGTTCGAAAACCTCCTCCTCCT
CCCTCCTCCGTGGATCCTTTTGGAGCGAACCGAGTGACACGTGAtgattt
gaatttcaaagataCATCACGTGATCTAGACTTGTTGAGTCGGACGATCC
ATAATGGCAGCCAAACTATTCAAAATGGTTGCAAAAGTAATGGGGTTCAA
AGTTTTTATAGCAATGCGATTATATAATAGGGTGTGACTTgattttgaat
tcaattttttgattatGGTCAGAAGAATTTTGTGTATATTTTATTAAAGG
TGTGAATTTTCtgtttgtttatttaattttttatgcatttgaaattatta
ttttttaaatgatgaaaaagaaTATTTGGGATTTTTTTATTAGGCTTTca
tgattatttttttgtggttttttttGGAGAAATAATTTTGGGAGTGTATA
TAAagtatattttaatttttattcagtttttgaattcttttgagGGATAA
ATAGGAGATCAAACTAAAGAAGGACTTGTGAACAAAAGCCAGTAGGAgca
atttttgtttgaatacCTTTGTTCTTGGTAAGTGTTAGCTAAGCCTCGAT
TGCTAATCTTAATTTTGTTTGACttgcttaaaggttttgtttttatataa
gagtgatatcgtttgcttactcgtcaattttaatttataagcttttttgc
attgaatttacacggatgtggagcaagattggtcagaaagagggaaagaa
aaacattttttgcttatatcagcacaatataataATAGACAGTGTCTGCC
TAATATGaaactgatatgaaacatgtgtctgatatgaaacggggacacta
atgtaaaaataaaacctttaagagtTCTAGAAATGGCTTTAAGATGTTCT
AGACAATAGTTTGGTCAAACTGAAAACGTTGAATgaaatttactttttat
ttttggatgAAGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005703XLOC_005703Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010159-exon-sc0000103-1491911889:16908..17095TCONS_00010159-exon-sc0000103-1491911889:16908..17095Clytia hemisphaericaexon
TCONS_00010159-exon-sc0000103-1510915933:16908..17095TCONS_00010159-exon-sc0000103-1510915933:16908..17095Clytia hemisphaericaexon
TCONS_00010159-exon-sc0000103-1575043694:16908..17095TCONS_00010159-exon-sc0000103-1575043694:16908..17095Clytia hemisphaericaexon
TCONS_00010159-exon-sc0000103-1491911889:17823..18043TCONS_00010159-exon-sc0000103-1491911889:17823..18043Clytia hemisphaericaexon
TCONS_00010159-exon-sc0000103-1510915933:17823..18043TCONS_00010159-exon-sc0000103-1510915933:17823..18043Clytia hemisphaericaexon
TCONS_00010159-exon-sc0000103-1575043694:17823..18043TCONS_00010159-exon-sc0000103-1575043694:17823..18043Clytia hemisphaericaexon
TCONS_00010159-exon-sc0000103-1491911889:18359..18451TCONS_00010159-exon-sc0000103-1491911889:18359..18451Clytia hemisphaericaexon
TCONS_00010159-exon-sc0000103-1510915933:18359..18451TCONS_00010159-exon-sc0000103-1510915933:18359..18451Clytia hemisphaericaexon
TCONS_00010159-exon-sc0000103-1575043694:18359..18451TCONS_00010159-exon-sc0000103-1575043694:18359..18451Clytia hemisphaericaexon
TCONS_00010159-exon-sc0000103-1491911889:19238..19321TCONS_00010159-exon-sc0000103-1491911889:19238..19321Clytia hemisphaericaexon
TCONS_00010159-exon-sc0000103-1510915933:19238..19321TCONS_00010159-exon-sc0000103-1510915933:19238..19321Clytia hemisphaericaexon
TCONS_00010159-exon-sc0000103-1575043694:19238..19321TCONS_00010159-exon-sc0000103-1575043694:19238..19321Clytia hemisphaericaexon
TCONS_00010159-exon-sc0000103-1491911889:21927..22010TCONS_00010159-exon-sc0000103-1491911889:21927..22010Clytia hemisphaericaexon
TCONS_00010159-exon-sc0000103-1510915933:21927..22010TCONS_00010159-exon-sc0000103-1510915933:21927..22010Clytia hemisphaericaexon
TCONS_00010159-exon-sc0000103-1575043694:21927..22010TCONS_00010159-exon-sc0000103-1575043694:21927..22010Clytia hemisphaericaexon
TCONS_00010159-exon-sc0000103-1491911889:22421..23572TCONS_00010159-exon-sc0000103-1491911889:22421..23572Clytia hemisphaericaexon
TCONS_00010159-exon-sc0000103-1510915933:22421..23572TCONS_00010159-exon-sc0000103-1510915933:22421..23572Clytia hemisphaericaexon
TCONS_00010159-exon-sc0000103-1575043694:22421..23572TCONS_00010159-exon-sc0000103-1575043694:22421..23572Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000103supercontigsc0000103:16908..23572 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	3.68798e-08	1.14435e-07	7.39979e-07	1.21908	1.18108	0	0	0	0.00211504	1.22405e-06	0	0.0952556	0	0	3.29631e-08	5.95184	4.96519	0	0	2.43879	2.39782	0.979853	1.36932	1.23947	1.16702	1.43266e-07	4.65176e-07	2.11398e-07	9.71226e-07
Blast
[Close]
BLAST of TCONS_00010159 vs. Swiss-Prot (Human)
Match: HNRH1 (Heterogeneous nuclear ribonucleoprotein H OS=Homo sapiens GN=HNRNPH1 PE=1 SV=4)

HSP 1 Score: 95.9005 bits (237), Expect = 7.007e-21
Identity = 46/82 (56.10%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:  376 NSKTGHSVHMRGLPFESTAADVIRFFAPLQPVDIRLLYESNTGRPKGECDVDFTTHHDAEEAMKKDKQNMGHRYIELFLKST 621
             S TGH VHMRGLP+ +T  D+  FF+PL PV + +    + GR  GE DV+F TH DA  AM KDK NM HRY+ELFL ST
Sbjct:  284 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPD-GRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNST 364
The following BLAST results are available for this feature:
BLAST of TCONS_00010159 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HNRH17.007e-2156.10Heterogeneous nuclear ribonucleoprotein H OS=Homo ... [more]
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