TCONS_00010117 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010117
Unique NameTCONS_00010117
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length734

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010117 ID=TCONS_00010117|Name=TCONS_00010117|organism=Clytia hemisphaerica|type=transcript|length=734bp
GTTAGGTTAAGACTTAGTAAATTTTTCTAAGATTCTATCAtacttttatt
ctttcataTCATTTTCTGTTCACTCAAATTGTTTCTCAAATTAGTCTAAG
TTTCATAAATCAATTATCAATTTAAGCTCCTAATTTTGTCATTTAGTCac
tattttcatttattttatcaaTTCAAATACTTATTATTccttaatttatt
ttcattcagtttgaACACAAAGATATCAATCCTTCAATCAATATCTTGTT
ACAAACCCTCTCAAGTGTGTTGCACTATTCCACATTCAAACGGGACCACA
CCCTCCAATCACATTCAACTCAATCAACTTTATCAATTCAGCCAAACATT
TATGTCAAAGAGAAATCTTCCTCGTATAAACTATAAGTAACTTCACAACA
CTGGTCGGAGTATCCACGTCGAGGACCATCTTTCCAGTCAACTTGCAAAT
CTTTCACTTCGTGAAACCATCATGCCTTCGACAAATGAAAGCAccatcaa
taaaatcaaagtccTAATTGCAGCCATCAATGATGCAATCGATGAGACAC
CAATCAATGGTTTGACTGCAAACAATCCACGCCCGTCGAGTTcttattct
tcaaaaacaagCTCTCAGAATCATGTCTTTCTCTGACTTTCGTGCGCATA
CTTTTCCtctgtttttagaatttaaacttcttcaattttttgactttgtc
aaATACCTTAATATCCtctttcttttcaaacttt
Run BLAST on NCBI

transcript from alignment at sc0000102:380666..381399-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010117 ID=TCONS_00010117|Name=TCONS_00010117|organism=Clytia hemisphaerica|type=transcript|length=734bp|location=Sequence derived from alignment at sc0000102:380666..381399- (Clytia hemisphaerica)
GTTAGGTTAAGACTTAGTAAATTTTTCTAAGATTCTATCATACTTTTATT
CTTTCATATCATTTTCTGTTCACTCAAATTGTTTCTCAAATTAGTCTAAG
TTTCATAAATCAATTATCAATTTAAGCTCCTAATTTTGTCATTTAGTCAC
TATTTTCATTTATTTTATCAATTCAAATACTTATTATTCCTTAATTTATT
TTCATTCAGTTTGAACACAAAGATATCAATCCTTCAATCAATATCTTGTT
ACAAACCCTCTCAAGTGTGTTGCACTATTCCACATTCAAACGGGACCACA
CCCTCCAATCACATTCAACTCAATCAACTTTATCAATTCAGCCAAACATT
TATGTCAAAGAGAAATCTTCCTCGTATAAACTATAAGTAACTTCACAACA
CTGGTCGGAGTATCCACGTCGAGGACCATCTTTCCAGTCAACTTGCAAAT
CTTTCACTTCGTGAAACCATCATGCCTTCGACAAATGAAAGCACCATCAA
TAAAATCAAAGTCCTAATTGCAGCCATCAATGATGCAATCGATGAGACAC
CAATCAATGGTTTGACTGCAAACAATCCACGCCCGTCGAGTTCTTATTCT
TCAAAAACAAGCTCTCAGAATCATGTCTTTCTCTGACTTTCGTGCGCATA
CTTTTCCTCTGTTTTTAGAATTTAAACTTCTTCAATTTTTTGACTTTGTC
AAATACCTTAATATCCTCTTTCTTTTCAAACTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005671XLOC_005671Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010117-exon-sc0000102-1575043694:380666..381399TCONS_00010117-exon-sc0000102-1575043694:380666..381399Clytia hemisphaericaexon
TCONS_00010117-exon-sc0000102-1510915933:380666..381399TCONS_00010117-exon-sc0000102-1510915933:380666..381399Clytia hemisphaericaexon
TCONS_00010117-exon-sc0000102-1491911889:380666..381399TCONS_00010117-exon-sc0000102-1491911889:380666..381399Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000102supercontigsc0000102:380666..381399 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.527952	0.401638	0	0.484914	1.32471	1.86394	1.85524	0.781691	0.141218	0	0.203419	1.32833	0	0.231615	0	0	0.0645426	0.0598514	0.0766967	0.225512	0	0.157318	0.339748	0.347856	0	0.335651	0.112728	0	0	0.201423
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010117 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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