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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010105 ID=TCONS_00010105|Name=TCONS_00010105|organism=Clytia hemisphaerica|type=transcript|length=1690bpRun BLAST on NCBI protein sequence of TCONS_00010105-protein >TCONS_00010105-protein ID=TCONS_00010105-protein|Name=TCONS_00010105-protein|organism=Clytia hemisphaerica|type=polypeptide|length=507bp MLTLCLVLSLFGNFLPTVSSYLNVDEITNLKYGVEISDKPVLFQGNSFYQRun BLAST on NCBI transcript from alignment at sc0000102:229664..246412- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010105 ID=TCONS_00010105|Name=TCONS_00010105|organism=Clytia hemisphaerica|type=transcript|length=16749bp|location=Sequence derived from alignment at sc0000102:229664..246412- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000102:229664..246412- >TCONS_00010105 ID=TCONS_00010105|Name=TCONS_00010105|organism=Clytia hemisphaerica|type=CDS|length=13716bp|location=Sequence derived from alignment at sc0000102:229664..246412- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00010105 vs. Swiss-Prot (Human)
Match: OS9 (Protein OS-9 OS=Homo sapiens GN=OS9 PE=1 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 4.661e-33 Identity = 78/245 (31.84%), Postives = 124/245 (50.61%), Query Frame = 3
Query: 150 LNVDEITNLKYGVEISDKPVLFQGNSFYQSPDVMTISSKFGQKYSCNLPVLQLP-ETEDDNEDKKIDPMTIISTIDKSLNDTCLEFNKGWWTYKLCHKKNITQYHVTEQGEVDSKTTELGAYEXXXXXXXXXXXXXXXXHL--YHKADYINGSKCDLTSIYRSTVVQYYCSD-ENLNSNMVIRVEEPATCEYIISVHVKKLCTHPAFXXXXXXXXXXLTCSPILGEKAFKRYQEEQKFIKEENDR 872
LN++E++ ++YG+EI PV+ G S QS DV+ +SSK+ Q+Y C LP + + E + E I + + CL K WWTY+ C+ ++I QYH+ E E+ + LG Y+ DW D+ K L YH Y NGSKCDL R V++ C + ++ + + RV+EP +C Y++++ +LC HP + C P L + + Y + Q K+ D+
Sbjct: 31 LNLEELSEMRYGIEILPLPVMG-GQS--QSSDVVIVSSKYKQRYECRLPAGAIHFQREREEETPAYQGPGIPELLSPMRDAPCLLKTKDWWTYEFCYGRHIQQYHM-EDSEIKGEVLYLGYYQSAFDWDDETAKASKQHRLKRYHSQTYGNGSKCDLNGRPREAEVRFLCDEGAGISGDYIDRVDEPLSCSYVLTIRTPRLCPHPLLRPPPSAAPQAILCHPSLQPEEYMAYVQRQADSKQYGDK 271 The following BLAST results are available for this feature:
BLAST of TCONS_00010105 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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