TCONS_00010091 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010091
Unique NameTCONS_00010091
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2001

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010091 ID=TCONS_00010091|Name=TCONS_00010091|organism=Clytia hemisphaerica|type=transcript|length=2001bp
AATGTTCTTTCACTAGGCTCAAATCACTGGATAAATCTGTTTTGGTCGTT
CTGATAAGATGTCATTTTCGAAGGAGTTTGTTTAACACGTGGTTTTAATT
TTGCAgagttttaataattttttgaatCAGTAGTAAGTCACATCTTGAGA
TATTTAACCTACTACAGAGTATTGTACATTGGTGCATCGCCACTTGGATT
CTGCACCAATCAAACCATTCTATAAGAACTATTACTTTATTACTGACAAT
CGACGTTGATTGGCGATATAAAACCCAACACAAAAATGATGAACAAAAGT
TTAATATCAGACGATGTTGAAAGCGACTCTTTAACATCAACTTATGAACA
TTTCGATCCTATTGATGAAGATCACCAAATAAGTCCAATACGTCCTGAGA
TAAATACAGAGAAGCATCGATTACATAAAGACAATAGTATCGACAGTCAA
TGCTCAAGTCATGGTACTGTCAGACGCTCGCACTCTCCCGAACTGCATAA
ATATGAAGAATTCTCGAATAAAATTAAACTGCAATGCCCGACCTGTAAAG
GCAAAGGAAAATTAACTCAAGgaCAAGCAGATAGTATGGTGGCACTAATA
CCCGTTCGTGATAAAAGACTAAAACCAAGAAAAACGAAGTTATATCTGGG
CATCACGTTTGTTGTTTGTATGATCGTCACTTTCCTGGTCACATTCTTCC
TGTTGCCACGTTCAGTATCCATTGAGATCATTGGCACTGATACCAAACAT
ATTTACATGCCAGACAGTCTCAAGACTGTACCTTACATTGACGTAGCTGT
CACATTCTCAATTAAGAACGATAATTTCTTCAAAGCTGACATTTCGAACA
TAAAGCAGGATATCAGTTGGAATCGTTTCATATTGAACTCGTCAGTTCTT
GATGGCAACAAACCTTTCCAAGTCAATGGAAGGACGCAACAAAATCATAC
GATATTAACACGGCAGATATTCCAAGGTGATGTCAATATCAAAGTCAAAC
GTGTTTGTGCATTTGGTTGGAATTGGTCGCTGCTTGAAATGTTCGTGAAC
ACGGCGACGGTCTCCTATTTATATCGAAGTGAACAGATATCGGACACGAA
CTATGAATACGTTATATGTATGAACCAAACTGCTTATACGATGAGTGGAA
GGAAAAGACGATCTAATACATCATTACAGCCCTTAAATCTATAACATTAG
ATTGGCTAACGCAAGAGTTATTTGTAAAAAttctaccttatcggggaaaa
cttcgtcggggaaaagtgacgaaattttggccaagtggggaatatttttc
cccgacgaaaattttccccggccttaatgcgcttaccaactaccagcaag
tgacgaatatttttccccgacgaaaatttttcccgacgaagttttccccg
ataaggtattcacTTATTTGTTGGAGACGATGTAACTTTATTGGGACGAT
GTGAAGAATACGTCTCTGGTCTCTACGATTTGTGAGAACCGATCGTGTTT
TTCTAACGATCCTCTTGCACATGTTGCTTAACAAAAAATCGAAGTAAATA
CAATCGCCATAAGCTGATGATGTTTGTAGAATCTCTCTGTCTAATAGCTT
GAAACCTCAGCGtttatgaacaaaaaatttttgggctttTCCATATTAGT
TAAGTATTGGCTTTCTTGGACCCTTTAAGATTGTCCACATTGATGTCGAA
CAAACTTTGAAGcgttaaggcttggggacacgagaagtttttttcgcgtt
ggtgcaatgcaacatgctcttgCAGTTGGTGGGatcaacacaagaaaaaa
agttcgtgtcccatggtttctttttttgtttcatgggacaggGAAATACC
TAAAAGACatgtgagatttcacttttgttggtagaaagaaaaatggggtg
gagaccacagatatctgtaaagcccgaagggctagatttgcggcttttat
cgaaaagtgaagcctaggtttggaaggatttcctaccaaagtcacgtgac
t
Run BLAST on NCBI

transcript from alignment at sc0000102:56604..62123-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010091 ID=TCONS_00010091|Name=TCONS_00010091|organism=Clytia hemisphaerica|type=transcript|length=5520bp|location=Sequence derived from alignment at sc0000102:56604..62123- (Clytia hemisphaerica)
AATGTTCTTTCACTAGGCTCAAATCACTGGATAAATCTGTTTTGGTCGTT
CTGATAAGATGTCATTTTCGAAGGAGTTTGTTTAACACGTGGTTTTAATT
TTGCAGAGTTTTAATAATTTTTTGAATCAGTAGTAAGTCACATCTTGAGA
TATTTAACCTACTACAGAGTATTGTACATTGGTGCATCGCCACTTGGATT
CTGCACCAATCAAACCATTCTATAAGAACTATTACTTTATTACTGACAAT
CGACGTTGATTGGCGATATAAAACCCAACACAAAAATGATGAACAAAAGT
TTAATATCAGACGATGTTGAAAGCGACTCTTTAACATCAACTTATGAACA
TTTCGATCCTATTGATGAAGATCACCAAATAAGTCCAATACGTCCTGAGA
TAAATACAGAGAAGCATCGATTACATAAAGACAATAGTATCGACAGTCAA
TGCTCAAGTCATGGTACTGTCAGACGCTCGCACTCTCCCGAACTGCATAA
ATATGAAGAATTCTCGAATAAAATTAAACTGCAATGCCCGACCTGTAAAG
GCAAAGGAAAATTAACTCAAGGTACATACTTGGACATTTTATTTTTTGCT
AAGACCCTTTTTTGGTTCGTGAATACAGTACAGAGTTTTTCAGGAGAGGC
TTTCAGTATTTTTCTGTAATTCAATCAAAAAGATTTTCTTATGTTTTTGA
CAGCGTTTTTCCCCCAACGTTTTTGAATTGATTATTCAACTGGCATTGCG
AAGTCTCAAACATTCGGAAATAAGCTTGAACATATTTTTGGAAACCTATG
TACCTTTATCATCCTTTTTAAGCTTTTATCGATATACCTACAGCCTTAAC
ATGTAGCCCTAAGCAATGCGAAACTGAATTTGAGATCATTTTTAAATCAA
TTTTTTTTACAGGACAAGCAGATAGTATGGTGGCACTAATACCCGTTCGT
GATAAAAGACTAAAACCAAGAAAAACGTATGTTCTTCAAAATTCTGCATT
CTTCAATAAAAAAATTTATGATATGCACCATTGCAATGTCTTCTGACATT
ACATCACGTACCCATTAGCTGATTCGTTGTAAGTGACGTAAATCAGTCAA
TTCGTCACTTTCAACCAATCAGCTGTTGGGTCCGGGGAAGACATTGCAAT
GGTGCATATCATGAATAATGGGCTTTTCCAGGAATTTTCCGTACCCCTCC
CTGTTGAGGATATCCATTGTTGGAGTTCCACAGTCCCCTGGATGTCTAGC
TTTAAAAAAATACCCCCTGGATATCCGACATGAAAAAGTGGATAGAAGGT
TTGAGGATATCCATGTATTTTGTCCTGTACCCCCTGGATTTTCAATCATT
TTATTCTGTCCACCCTGGATATCCAGGTATTCTGTCCAATACCCCTCTGA
ATATCCAGGCATCAAATTGGTATTCAAATTGTCTTCACTCGTTCTAATAA
CTTTCTAATAATTTTGAAAATTAATACCAATTAGGAGACGCCTTTAAATT
GCTGTTGTATTACTGAAATACATTTTTGTTTACATTAACATCACCTTAAA
AAAAATTATAGCAAATCACTCACTTAAAAAAATAATACACTTATGATAAA
TTCAAGTCTTTAACCACACAACTTCAAAATATAATGATGGTTTTTCCTTT
AAGTTTTTCTTTTATTTCATAGCTTAGTATTAACCCTGGCGATATCACTT
GGTGCCTTGCGGGGGGGGGAGAGCTCTCTAATTTTCTATGTTCGGTTTGT
AAGAAGTATATGTTCGTAAGTGTAATGTACAGTAGTTTCTCAAATTATAA
AGAAAAAAAACACTTCAACTTCGTTTTATAGGAAGTTATATCTGGGCATC
ACGTTTGTTGTTTGTATGATCGTCACTTTCCTGGTCACATTCTTCCTGTT
GCCACGTTCAGTATCCATTGAGATCATTGGCACTGATACCAAACATATTT
ACATGCCAGACAGTCTCAAGACTGTACCTTACATTGACGTAGCTGTAAGA
TTTATTTTTGAAAGATAATTTTCATCGGTAGCAAGGGTAGGTTTTAAGGC
CGGTATCCACTTTCGCGCAAAATAGGCGGCAGTTTTTTCTCAATCTCTTT
TGCCTAAAGAAAAGATTACGTCATAAAAAGGTTTCGCGCGAACAAAAAAA
ATTTGAAGGAAGCTCAACTTTTTTCAACCGTTATGTCAATTTTGACCAAT
GGAATTGCTTCATTTTTCAACCGACCAATGACTTTAAAAATGTGAAAAAG
TTTTCGCTCATTTCGCCTTTAATAAAAATTAGAAAAGGAAAGTTTAATAA
GTGTCCATTCAAGAACTCTATCTAACAAAAAGATAAGTTCGGTAATGAAA
AAAGCTCTTTTTTTTTGCTTGAAAACTTGTTGGGTAAAAAAAGAGGACTA
GCACTTAGATCAGTCATGTAATCTTCTAATACTTCAGGCGTACAAACTTT
CACGAGCAGAAACTCGCGATTTTCACGAAAATATATGTTCGCGAAAGTTT
GTACACCTAAAGTAGCCTATATATCTACCTATGTTTAAACAATTCTCATG
TTTGTTTCAGTTCTTTTGAAAACTTTCGTTTTATTATTGATCAGGTCACA
TTCTCAATTAAGAACGATAATTTCTTCAAAGCTGACATTTCGAACATAAA
GCAGGATATCAGTTGGAATCGTTTCATATTGAACTCGTCAGTTCTTGATG
GCAACAAACCTTTCCAAGTCAATGGAAGGACGCAACAAAATGTGAGTAAA
TTATATAAACGCAGGTTCATTTTGAAACAGTTTCCCTAAAATTTAGACGA
ATAGTAGACGATTCCCCTTTTTTAAGTAAGTAGGTGAGTTTGCGACCGCA
GTCGGAGGCGACCTGAAGGCTCCTTTTTCGATAGCTGTCCACTCGAAGGT
AGGGGTGGGCGCCACTCTTTCTCCCTATATTTACTCCATTTACTCTTGAT
CCGTCTCTTTAATTGCTGAGCATCAAGCAGATAGGCATCAAGTACCATAT
TGGGAATCTTTGGTATGACCCGGCTGGGGAACGAACCCACAACCTTGCGC
ACCGTAGCTGTATGATCAACATTCATGCTACGGCCGCTTTCTTTAGTGAT
TTCACAAACATCAAAAACACATTAAGATTCACATTTCTTAACTTCTTACA
TAGCCTTTTAGTCCCCTAATATTCGGAGAGGGATTACAACTAGATGTGCT
TCATAAGATTTCAACATTTTATTCCATTTCATCTACAGCATACGATATTA
ACACGGCAGATATTCCAAGGTGATGTCAATATCAAAGTCAAGTAAGTGTA
ATTTTTAAGTATTGAATTTAAAAATAATGTTTTCTACGGAAATAACCCGG
TTGTAGCCAGTAGTGGCAAATTTAAACTAGATAAAAGTTGTACAAAATTT
GCCATTTGTGTTTCTGTAGAAAACATTACGTCATTAATATCATGAATTAT
TACTTTCACTGTTCAGTTTTAATTCGTCTTTAATTATTGTTTAACACTGC
TTCGTCTGTCTGAGACTGCTAAATGATAAAAGTGGATGTCTTTGTGCATG
CTTTTTTTATAAGAATATCTTCTATGAGAATATCAGCGTGAAAATTGGCC
AAATCGTAAGAATACCCTAAGAATACCCTCTAGTAGGGTGAGGCTCACAG
ATTTTGATAAGAATATAGTCATTTTGTATTTGGTTAACAGAAAAAGCTGG
TTCTTTTGTTAGACTTAAATTGAAACTTTTGGGCAGAATAATAATTTTAG
CTCCCAATGTTTACTCAAAAGTCTCAAACTCCCAAATTGATCATTGTTTG
TGTAAAAGTCAAGTCTGAAAAAGTAAGGCTACGTTTAAGAATATTTCACC
CTCAATTTTGGTAATTTCTTAAGATTACTTGACCCTCATCCAAAGTACAA
TATTCTTTTAAAAAAAGCGTGTACATCTAAAGCAGAAATTTTGCCACTTA
TCAAACCTTACCCCCCCCTCCTTGAAAAAGACCTCCTCAACAGGGAGTAT
TCGGTTGTTGTTTTTCTGGAAAAGCCCAATGCATAAAAATCGAGAACTAA
AGACCTAATGTCGCAACCAAGCACACCAAGTGTGGTGCACACCAGTTAAA
AAGCATTATTTTTGAAAATTATTCATCTCTTTTTTTCTTGAAGACGTGTT
TGTGCATTTGGTTGGAATTGGTCGCTGCTTGAAATGTTCGTGTAAGTATT
TTGTATTTTTATTGCGTCATTTATATTTCGTAATTTTAATTTCGTTTCCA
CCAAAAAAAAATTCTGTATACTATCCGCTGCAATCTGTGTTGACGATTTT
TAAAGCTTTTTTCACATGCACGTAAAATTTTACTTAAGACCTTGAAGGGT
GGGGAATTTCCCTAAGCTTACGTAGTGTTTTAAGGCCTTATGTAGAGTTT
GTTTACGTTCAAAAAGTTTTGAATCATTTTAATCAACAAAAACTCTACAT
TATGTCGGGGAAATTCCCAAAAGACAGCCTTACGAACGATTTTCCGTAAG
GTCCAAAGTGAAATTTTACACATATTTTCCTTCAGAGTTAAATATTTTAC
TAATTTACCTTTCAGGAACACGGCGACGGTCTCCTATTTATATCGAAGTG
AACAGATATCGGACACGAACTATGAATACGTTATATGTATGAACCAAACT
GCTTATACGATGAGTGGAAGGAAAAGACGATCTAATACATCATTACAGCC
CTTAAATCTATAACATTAGATTGGCTAACGCAAGAGTTATTTGTAAAAAT
TCTACCTTATCGGGGAAAACTTCGTCGGGGAAAAGTGACGAAATTTTGGC
CAAGTGGGGAATATTTTTCCCCGACGAAAATTTTCCCCGGCCTTAATGCG
CTTACCAACTACCAGCAAGTGACGAATATTTTTCCCCGACGAAAATTTTT
CCCGACGAAGTTTTCCCCGATAAGGTATTCACTTATTTGTTGGAGACGAT
GTAACTTTATTGGGACGATGTGAAGAATACGTCTCTGGTCTCTACGATTT
GTGAGAACCGATCGTGTTTTTCTAACGATCCTCTTGCACATGTTGCTTAA
CAAAAAATCGAAGTAAATACAATCGCCATAAGCTGATGATGTTTGTAGAA
TCTCTCTGTCTAATAGCTTGAAACCTCAGCGTTTATGAACAAAAAATTTT
TGGGCTTTTCCATATTAGTTAAGTATTGGCTTTCTTGGACCCTTTAAGAT
TGTCCACATTGATGTCGAACAAACTTTGAAGCGTTAAGGCTTGGGGACAC
GAGAAGTTTTTTTCGCGTTGGTGCAATGCAACATGCTCTTGCAGTTGGTG
GGATCAACACAAGAAAAAAAGTTCGTGTCCCATGGTTTCTTTTTTTGTTT
CATGGGACAGGGAAATACCTAAAAGACATGTGAGATTTCACTTTTGTTGG
TAGAAAGAAAAATGGGGTGGAGACCACAGATATCTGTAAAGCCCGAAGGG
CTAGATTTGCGGCTTTTATCGAAAAGTGAAGCCTAGGTTTGGAAGGATTT
CCTACCAAAGTCACGTGACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005658XLOC_005658Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010091-exon-sc0000102-1575043694:61553..62123TCONS_00010091-exon-sc0000102-1575043694:61553..62123Clytia hemisphaericaexon
TCONS_00010091-exon-sc0000102-1575043694:61148..61211TCONS_00010091-exon-sc0000102-1575043694:61148..61211Clytia hemisphaericaexon
TCONS_00010091-exon-sc0000102-1575043694:60130..60292TCONS_00010091-exon-sc0000102-1575043694:60130..60292Clytia hemisphaericaexon
TCONS_00010091-exon-sc0000102-1575043694:59383..59529TCONS_00010091-exon-sc0000102-1575043694:59383..59529Clytia hemisphaericaexon
TCONS_00010091-exon-sc0000102-1575043694:58833..58885TCONS_00010091-exon-sc0000102-1575043694:58833..58885Clytia hemisphaericaexon
TCONS_00010091-exon-sc0000102-1575043694:57933..57980TCONS_00010091-exon-sc0000102-1575043694:57933..57980Clytia hemisphaericaexon
TCONS_00010091-exon-sc0000102-1575043694:56604..57558TCONS_00010091-exon-sc0000102-1575043694:56604..57558Clytia hemisphaericaexon
TCONS_00010091-exon-sc0000102-1510915933:61553..62123TCONS_00010091-exon-sc0000102-1510915933:61553..62123Clytia hemisphaericaexon
TCONS_00010091-exon-sc0000102-1510915933:61148..61211TCONS_00010091-exon-sc0000102-1510915933:61148..61211Clytia hemisphaericaexon
TCONS_00010091-exon-sc0000102-1510915933:60130..60292TCONS_00010091-exon-sc0000102-1510915933:60130..60292Clytia hemisphaericaexon
TCONS_00010091-exon-sc0000102-1510915933:59383..59529TCONS_00010091-exon-sc0000102-1510915933:59383..59529Clytia hemisphaericaexon
TCONS_00010091-exon-sc0000102-1510915933:58833..58885TCONS_00010091-exon-sc0000102-1510915933:58833..58885Clytia hemisphaericaexon
TCONS_00010091-exon-sc0000102-1510915933:57933..57980TCONS_00010091-exon-sc0000102-1510915933:57933..57980Clytia hemisphaericaexon
TCONS_00010091-exon-sc0000102-1510915933:56604..57558TCONS_00010091-exon-sc0000102-1510915933:56604..57558Clytia hemisphaericaexon
TCONS_00010091-exon-sc0000102-1491911889:61553..62123TCONS_00010091-exon-sc0000102-1491911889:61553..62123Clytia hemisphaericaexon
TCONS_00010091-exon-sc0000102-1491911889:61148..61211TCONS_00010091-exon-sc0000102-1491911889:61148..61211Clytia hemisphaericaexon
TCONS_00010091-exon-sc0000102-1491911889:60130..60292TCONS_00010091-exon-sc0000102-1491911889:60130..60292Clytia hemisphaericaexon
TCONS_00010091-exon-sc0000102-1491911889:59383..59529TCONS_00010091-exon-sc0000102-1491911889:59383..59529Clytia hemisphaericaexon
TCONS_00010091-exon-sc0000102-1491911889:58833..58885TCONS_00010091-exon-sc0000102-1491911889:58833..58885Clytia hemisphaericaexon
TCONS_00010091-exon-sc0000102-1491911889:57933..57980TCONS_00010091-exon-sc0000102-1491911889:57933..57980Clytia hemisphaericaexon
TCONS_00010091-exon-sc0000102-1491911889:56604..57558TCONS_00010091-exon-sc0000102-1491911889:56604..57558Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000102supercontigsc0000102:56604..62123 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.3056	16.2044	8.99549	7.92748	18.5527	13.148	11.922	12.221	9.53489	8.90715	9.87239	7.43647	7.85171	8.09722	6.72357	6.80801	8.61665	10.0244	5.89294	9.39101	12.0544	13.3679	17.9904	17.2752	25.0809	27.7147	9.97303	8.97005	15.5178	14.1324
Blast
[Close]
BLAST of TCONS_00010091 vs. Swiss-Prot (Human)
Match: T106B (Transmembrane protein 106B OS=Homo sapiens GN=TMEM106B PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 1.242e-26
Identity = 72/235 (30.64%), Postives = 125/235 (53.19%), Query Frame = 1 
Query:  502 YEEFSNKIKLQCPTCKGKGKLTQGQADSMVALIPVRDKRLKPRKTKLYLGITFVVCMIVTFLVTFFLLPRSVSIEIIGTDTKHIYMPDSLKTVPYIDVAVTFSIKNDNFFKADISNIKQDISWNRFILNSSVLDG---NKPFQVNGRTQQNHTILTRQI-----FQGDVNIKVKRVCAFGWNWSLLEMFVNTATVSYLYRSEQISDTNYEYVICMNQTAYTMSGRKRRSNTSLQP 1182
            Y EF+ +  + CPTC+G G++ +GQ + +VALIP  D+RL+PR+TKLY+  +  VC++++ L  FFL PRS+ ++ IG  + ++   D  K   Y+++  T +I N+N++  ++ NI   + +++ ++  + L+      P  +        T++  ++     F   ++IKV  +           M   T T +Y   SEQIS   Y+YV C   T Y + G+    N  LQP
Sbjct:   50 YVEFTGRDSVTCPTCQGTGRIPRGQENQLVALIPYSDQRLRPRRTKLYVMASVFVCLLLSGLAVFFLFPRSIDVKYIGVKSAYVSY-DVQKRTIYLNITNTLNITNNNYYSVEVENITAQVQFSKTVIGKARLNNITIIGPLDMKQIDYTVPTVIAEEMSYMYDFCTLISIKVHNIVL---------MMQVTVTTTYFGHSEQISQERYQYVDCGRNTTYQL-GQSEYLNV-LQP 272
The following BLAST results are available for this feature:
BLAST of TCONS_00010091 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
T106B1.242e-2630.64Transmembrane protein 106B OS=Homo sapiens GN=TMEM... [more]
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