TCONS_00010085 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010085
Unique NameTCONS_00010085
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length289

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010085 ID=TCONS_00010085|Name=TCONS_00010085|organism=Clytia hemisphaerica|type=transcript|length=289bp
TGACAGACAGTTGAAATCAGCTCTCAATACGTTTGATGCATGTATTAAAT
TCAAGAGCGTACAGAACATCAATCTCTTGAAATCGCCTCCTGGTGACAAG
AATATTGAAAAGCAGCCAAACTTTTATTCCACcgcaaagaaaagaaaagc
gaAGAACAAGGTTCGCTTTGCGAGATCCACGTCAGGAgaactgaaagatt
tttttgagtTAAAACCATGGGAAGGTCAAACGAGCAACCCCGACAATGGG
AGAGATGAAGTGCCAAGTACACAAATCACGTCAACAAAG
Run BLAST on NCBI

transcript from alignment at sc0000102:417880..418556+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010085 ID=TCONS_00010085|Name=TCONS_00010085|organism=Clytia hemisphaerica|type=transcript|length=677bp|location=Sequence derived from alignment at sc0000102:417880..418556+ (Clytia hemisphaerica)
TGACAGACAGTTGAAATCAGCTCTCAATACGTTTGATGCATGTATTAAAT
TCAAGAGCGTACAGAACATCAATCTCTTGAAATCGCCTCCTGGTGACAAG
AATATTGAAAAGCAGCCAAACTTTTATTCCACcgcaaagaaaagaaaagc
gaAGAACAAGGTTCGCTTTGCGAGATCCACGTCAGGAgaactgaaagatt
tttttgagtTAAAACCATGGGAAGGTGATTCCCCTTTTAAGTACTTTACA
TGACTACTTTAGATAATTTGCTGTGCCTTTCATTTAATTCAATTTATATT
GGTAAAGCGATACAACATAATCATCAGTTCAATATACTAACTTTATTAGA
ACGCTGTCTAGTTTGTTAAATTCGCTTCAATATTTATaccattttcattt
gtcaagCATCTAACAATGTAACAGCTTAAAATCTAATTCTAATTCTAATT
TTAGATCAAACGAGTAACCCCGACAACGGGAGAGATGAAGTGCCAAGTAC
ACAAATCACGTCTACAAGTATGAATAATTATCTTTACGGTCAAAAGAGAT
GATAATATCTGTgggtttttcaaattttgggttcgtttttgaaaatttcc
tttcAACTCTAGGTCAAACGAGCAACCCCGACAATGGGAGAGATGAAGTG
CCAAGTACACAAATCACGTCAACAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005654XLOC_005654Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010085-exon-sc0000102-1491911889:417880..418103TCONS_00010085-exon-sc0000102-1491911889:417880..418103Clytia hemisphaericaexon
TCONS_00010085-exon-sc0000102-1510915933:417880..418103TCONS_00010085-exon-sc0000102-1510915933:417880..418103Clytia hemisphaericaexon
TCONS_00010085-exon-sc0000102-1575043694:417880..418103TCONS_00010085-exon-sc0000102-1575043694:417880..418103Clytia hemisphaericaexon
TCONS_00010085-exon-sc0000102-1491911889:418492..418556TCONS_00010085-exon-sc0000102-1491911889:418492..418556Clytia hemisphaericaexon
TCONS_00010085-exon-sc0000102-1510915933:418492..418556TCONS_00010085-exon-sc0000102-1510915933:418492..418556Clytia hemisphaericaexon
TCONS_00010085-exon-sc0000102-1575043694:418492..418556TCONS_00010085-exon-sc0000102-1575043694:418492..418556Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000102supercontigsc0000102:417880..418556 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.00983	0	10.6901	6.6674	0	0	4.42307	2.51357	2.76052	3.03532	6.38848	0.714613	0	10.9922	4.42231	6.39673	12.0078	9.3409	0	0	0	0	0.948021	0	0	0.124084	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010085 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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