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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010081 ID=TCONS_00010081|Name=TCONS_00010081|organism=Clytia hemisphaerica|type=transcript|length=1930bp
CGTACTTAAGCTATAATAAGTCACAGACTTGAACCCAAAACATTCCATCA
TAACGCCCAGCCAAAGAGAGGCGTTCTTAAATCTTTCATACCGCGACGAc
gtttaaaaagaaattcacaTTCTCACATTAGTAATAGCATCCAACGTATC
TTGGGGCGGTGGAAGGGCGCaTTCTCACATTAGTAATAGCATCCAACGTA
TCTTGGGGCGGTGGAAGGGCGCATTCCCACTTGGTGGTTACCTCGATTCT
CCTTCGTTGCTTCTCGATTACTTGTTTACCGATGCGAATCAAATCTTGTG
AACAATCACAAAAATTGATACGTCGAAGCTTCCTACATTTACTAACAAGt
gctttcaaatattttgatgctAAATTTTGATCAGAAGCTTGAAAATTGAT
AATGGATAATGTTTCAAGATCCGGTGTGTTTATTATGAGTTGTGGAATCA
CTTTGCTCAAACTGAGTTCTTGAGGAAAACAAGCTCCAAATTCAAGTGTT
TTAAGGTTCGGTATCTTCGGTATCATTTCAGCTAAATGTTCTGAAAAAAC
GTGGAAAGACTGATAAATTCCCAAATACTCGAGTCGATTGCAATTTGATA
AGAAATTTGCCAAGGCTGTCGGTGAAATATGGAAGCTCCATCGAATGTCG
AGCATTTTGAGCATGTTACTGCCGAGTGTAGTCATTTTCGCCAAAACTTT
GTCGTTGACTGCATTTCCTTCTCCGCAATAAGACATATTGAGATACTCCA
GCCATCTGAGTTGAACGAGAAGTCCTTTCAAACCGTGGTATGTCAAACGG
GGGCAAGCTGATATGTCAAGCTCTTGAAGACTGCTTCGGGCCCAATAGGT
TTGATTGAAAACGTCATCTTCTATCCTTAAGTAACGAACAAGCAGCGTCC
TCAATTTGGAACATTTCTCGATGAGCGTTGAGAATGAAGTGCCGTAGACG
AATCTACAGCCGATAAGACACAACGATCTGAGGTTTGGGCAACTGTTAGC
AAGCGTCGCTACACCTCTATCGTCCATTTGATCGCAGTTGGTGAAATCAG
CCCTTTCCAATGCCGGTAAGAGAGTGAAGAATATCCTCAACTGCTTGTCG
TTCAGACTGTTTGAACCAACACCAAAATTGACGACGCAAGAGAAATGTTT
ACGGAGTCCattcataaaatgaaaatttcccaTCGCATTACGTAAATCAA
GAGTTTTTAGAGTCTTTGGAAAGACAACTTTGGATCGACCAGTATCTGGT
ACTTTTTCAATAACGCTACCTCGTCCAAAAACAAGAGTGTTTAATAATCG
ACAATGAACGATAAaacttttcaacattttgaaagaGACTTGTAAACTAC
CAAGGTATACCTTTTTAGTACATTTCATTCTGGTCATGGCAAGTGTTTGG
AAGTCTTTATCATTGATGTTGGTATTCAAAGGTGCAAAGTTCACAATCTT
CCATAAGGTTCGGTCCTTTGAGATCTTGTTCCAGTGTTTACATACTAAAC
TGCACGTCGTTAATTCGACTTTATCGAAAAACCTGAATATCCATAGTAAA
GCATCATCTGTCAAGAGATAAGTAGCATTAGGATCAAGAGGCATATTCAC
ATCCATTTCAGGTTCAGGAGATGGTCCATGGACAATATCACGAATGACTT
CATCTATCAGCGGATTTTCTTGCTCTTCCGGTAATGATAGAGTACCTCTC
AAAACATAACGTTTCTGATTCTCTGCCATTTCAAAATTATACTCAAAATT
TCCTGTCGTTCTTGTATAAACGAGAGTTCACCATGAAATGAAATAGAAAG
ACGTTAAAATATTTGTGACGTTAATATTTCTCAATGGGttgacttcaaaa
aactgacgtcaataTTCAATGACGCACTGTACACCACATGCATGTCTTTT
CTTTGACACATGCTTATAAAGGACGATTTT Run BLAST on NCBI transcript from alignment at sc0000102:312519..316641+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010081 ID=TCONS_00010081|Name=TCONS_00010081|organism=Clytia hemisphaerica|type=transcript|length=4123bp|location=Sequence derived from alignment at sc0000102:312519..316641+ (Clytia hemisphaerica)
CGTACTTAAGCTATAATAAGTCACAGACTTGAACCCAAAACATTCCATCA
TAACGCCCAGCCAAAGAGAGGCGTTCTTAAATCTTTCATACCGCGACGAc
gtttaaaaagaaattcacaTTCTCACATTAGTAATAGCATCCAACGTATC
TTGGGGCGGTGGAAGGGCGCATTCCCACTTGGTGGTTACCTCGATTCTCC
TTCGTTGCTTCTCGATTACTTGTTTACCGNTACAGTTGACGATacactcc
attattcgataaaatataaagtccccgtcaacaagaaactctcgtaaacg
acgctcccttattcgaatcccccttgaagatcgaattagagagcgtcaac
tctACAGAGAAAACATTATTACAGAGACCGTTCATTATAATTTTCAGATC
GTATGTGTTATCAGGAACCCAAGAGACACATGCCAGTCTCTTCTCAACCA
TTACCGAGTCCTCGAGAAGTACACCGGGGACTTTGAAACCATTGCTAACG
TTTTCTTAAAAGATTTGGGATTCAACTGGGGACCTTTCTTTAAGAATGTA
TTGAGTTACTGGGAGCGACGTCACCAAGATAATATACTTCTAGTATCTTA
TGAAGAAATGCAACAAGATTTGGGCTTGGTGATCAAGAAAGTTGCCAAGT
TTGTTGATGTCTCAATGGATGAGAACCAAGTTATATCGTTGGTCGAGAAG
TTATCCTTCAAAAGCATGAAACAGAACGCAGTCAACAGTTACAAAGGAGT
AAGTTACTCGAATTCTTTTACCACCTGAATATTATCGGAGTAATTTCGCT
TCGCTAGATTAACTTTATCAATTTGGTCATTAGTCTTTAAAAATAGTCCG
CTAACTTACTACATTTTAAAGGGATAGTCatatgttttagatttttcggT
CGGTATTTATTTCCAGTCCTTTTATGCAAAGCCAATGTAAAcacattttc
agaatttgtcaTTTGGAAGCTAGATAGGCTAAACGATTTTAAATCGGTTA
AGCTTCACAAAACTCATTATATTTCGAAACTTAAATGCTTTAATGAAACT
AACCCTCTTATCTAcgtaatttcaaaatttagtcaAGGTCTATTTCTTTT
ACAGGGACCACATGATTTGAGCAAGCTATACAACAAAGGAAAAACAGGaa
gttggaaagatatttttacaCCTAGTAtgatcgaaaagtttgaaaaatgg
gaAGAAAAATGGTTGACAGATACAGATTTGACATTCACCTACGAATAGGA
CAtattagatttttaaaaaaactagaaAGGGAActgtttaaaatgaaatt
ttatgaaataaaatgagATAATATTAACTTCTAAAAATAAATACCCtacg
aaaaataaatttgtggctaaaacaccaaaatagtttcaaaatagattttc
caaaaattaagcaaaatattatgcatGAAGTTTTGCTGTCCCATAACTGA
TGTTATTTTTATTATCAAGAGAATTACCATGTAGAAGGGGCCACAACTTA
GGATCCGTGAAATCTTCTAGCACACATGAATTTTAAAAACACGATTCGTT
TTTAGCTTCAGGTCCAGTTGAagtggggagactggggagacttaaACCTc
cctgagatttttttctcaagttcCTAGGAGTTTTATCTCGaattttgatt
tcgttttgagactTTAGCCCCCCCCCTTTTACGGTTCTTCCGCTGGGCAT
TATTTCCAACCCTTAGCACCAGAATCTCTTCCCAAAAATAACTATATTCA
CCTTTTTATAGGAAATTCATGTTATTGCGTCTTAGAATTAAGGTTTCACG
TATCCTAACTCAATACGAATGTTTATTAAAGGTTTCAACTAAAACTGAGC
CATTATCAATCAacgcaccgcgctgaatctaaaaatagattttatttttg
acataatcatttctttcgatgtgtttgtacgagttccaatcccaacaacc
tttgcgttaatctctttttcacgttaattgcatcatttgaaaaaaaatat
atataagaaATTGCACATGTCTCTATTGAGCGGCATTGAATTGTAGGAtc
gcaactcgtacaaatgtcataaaaagtgaaaaataataattatgacgtat
gcgtttCGGAGCGCTATTGTTCTTAAAAGTGTATGCCTCAATTTGACCCT
CTATTTCAAAAGAATGGCACTGAGAGAAGTAGATATATGTTCATTAGACC
TGCTTTTATTTACCGCTAATTATCCAATTACTTTGAATTAGAATGAGTAC
TTAAGCTATAATAAGTCACAGACTTGAACCCAAAACATTCCATCATAACG
CCCAGCCAAAGAGAGGCGTTCTTAAATCTTTCATACCGCGACGAcgttta
aaaagaaattcacaTTCTCACATTAGTAATAGCATCCAACGTATCTTGGG
GCGGTGGAAGGGCGCATTCCCACTTGGTGGTTACCTCGATTCTCCTTCGT
TGCTTCTCGATTACTTGTTTACCGATGCGAATCAAATCTTGTGAACAATC
ACAAAAATTGATACGTCGAAGCTTCCTACATTTACTAACAAGtgctttca
aatattttgatgctAAATTTTGATCAGAAGCTTGAAAATTGATAATGGAT
AATGTTTCAAGATCCGGTGTGTTTATTATGAGTTGTGGAATCACTTTGCT
CAAACTGAGTTCTTGAGGAAAACAAGCTCCAAATTCAAGTGTTTTAAGGT
TCGGTATCTTCGGTATCATTTCAGCTAAATGTTCTGAAAAAACGTGGAAA
GACTGATAAATTCCCAAATACTCGAGTCGATTGCAATTTGATAAGAAATT
TGCCAAGGCTGTCGGTGAAATATGGAAGCTCCATCGAATGTCGAGCATTT
TGAGCATGTTACTGCCGAGTGTAGTCATTTTCGCCAAAACTTTGTCGTTG
ACTGCATTTCCTTCTCCGCAATAAGACATATTGAGATACTCCAGCCATCT
GAGTTGAACGAGAAGTCCTTTCAAACCGTGGTATGTCAAACGGGGGCAAG
CTGATATGTCAAGCTCTTGAAGACTGCTTCGGGCCCAATAGGTTTGATTG
AAAACGTCATCTTCTATCCTTAAGTAACGAACAAGCAGCGTCCTCAATTT
GGAACATTTCTCGATGAGCGTTGAGAATGAAGTGCCGTAGACGAATCTAC
AGCCGATAAGACACAACGATCTGAGGTTTGGGCAACTGTTAGCAAGCGTC
GCTACACCTCTATCGTCCATTTGATCGCAGTTGGTGAAATCAGCCCTTTC
CAATGCCGGTAAGAGAGTGAAGAATATCCTCAACTGCTTGTCGTTCAGAC
TGTTTGAACCAACACCAAAATTGACGACGCAAGAGAAATGTTTACGGAGT
CCattcataaaatgaaaatttcccaTCGCATTACGTAAATCAAGAGTTTT
TAGAGTCTTTGGAAAGACAACTTTGGATCGACCAGTATCTGGTACTTTTT
CAATAACGCTACCTCGTCCAAAAACAAGAGTGTTTAATAATCGACAATGA
ACGATAAaacttttcaacattttgaaagaGACTTGTAAACTACCAAGGTA
TACCTTTTTAGTACATTTCATTCTGGTCATGGCAAGTGTTTGGAAGTCTT
TATCATTGATGTTGGTATTCAAAGGTGCAAAGTTCACAATCTTCCATAAG
GTTCGGTCCTTTGAGATCTTGTTCCAGTGTTTACATACTAAACTGCACGT
CGTTAATTCGACTTTATCGAAAAACCTGAATATCCATAGTAAAGCATCAT
CTGTCAAGAGATAAGTAGCATTAGGATCAAGAGGCATATTCACATCCATT
TCAGGTTCAGGAGATGGTCCATGGACAATATCACGAATGACTTCATCTAT
CAGCGGATTTTCTTGCTCTTCCGGTAATGATAGAGTACCTCTCAAAACAT
AACGTTTCTGATTCTCTGCCATTTCAAAATTATACTCAAAATTTCCTGTC
GTTCTTGTATAAACGAGAGTTCACCATGAAATGAAATAGAAAGACGTTAA
AATATTTGTGACGTTAATATTTCTCAATGGGttgacttcaaaaaactgac
gtcaataTTCAATGACGCACTGTACACCACATGCATGTCTTTTCTTTGAC
ACATGCTTATAAAGGACGATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010081-exon-sc0000102-1491911889:312519..312688 | TCONS_00010081-exon-sc0000102-1491911889:312519..312688 | Clytia hemisphaerica | exon |
| TCONS_00010081-exon-sc0000102-1510915933:312519..312688 | TCONS_00010081-exon-sc0000102-1510915933:312519..312688 | Clytia hemisphaerica | exon |
| TCONS_00010081-exon-sc0000102-1575043694:312519..312688 | TCONS_00010081-exon-sc0000102-1575043694:312519..312688 | Clytia hemisphaerica | exon |
| TCONS_00010081-exon-sc0000102-1491911889:314882..316641 | TCONS_00010081-exon-sc0000102-1491911889:314882..316641 | Clytia hemisphaerica | exon |
| TCONS_00010081-exon-sc0000102-1510915933:314882..316641 | TCONS_00010081-exon-sc0000102-1510915933:314882..316641 | Clytia hemisphaerica | exon |
| TCONS_00010081-exon-sc0000102-1575043694:314882..316641 | TCONS_00010081-exon-sc0000102-1575043694:314882..316641 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000102 | supercontig | sc0000102:312519..316641 + |
Blast
BLAST of TCONS_00010081 vs. Swiss-Prot (Human)
Match: FBXL2 (F-box/LRR-repeat protein 2 OS=Homo sapiens GN=FBXL2 PE=1 SV=3) HSP 1 Score: 86.6557 bits (213), Expect = 6.208e-18 Identity = 96/398 (24.12%), Postives = 167/398 (41.96%), Query Frame = -1
Query: 482 LTDDALLWIFRFFDKVELTTCSLVCKHWNKISKDRTLWKIVNFAPLNTNINDKDFQTLAMTRMKCTKKVYL-GSLQVSFKMLKSFIVHCRLLNTLVFGRGSVIEKVPDTGRSKVVFPKTLKTLDLRNAMG--------------NFHFMN-----------------GLRKHFSCVVNFGVGSNSLNDKQLRIFFTLLPALERADFTNCDQMDDRGVATLANSCPNLRSLCLIGCRFVYGTSFSTLIEKCSKLRTL-LVRYLRIEDDVFNQTYWARS--SLQELDISACPRLTYHGLKGLLVQLRWLEYLNMSYCGEGNAVNDKVLAKM--TTLGSNMLKMLDIRWSFHISPTALANFLSNCNRLEYLGIYQSFHVFSEHLAEMIPKIPNLKTLEFGA 1564
L + LL IF F D V L C+ + K WN ++ D + W+ ++ T++ + + ++ +K+ L G + V LK+F +CR + L + I T S F LK LDL + + N ++N G R + ++ G L D+ L+ L + +C ++ D GV + C L++LCL GC + S + L C +L+ L R + D F T AR+ L+++D+ C +T L L + L+ L++S+C + D + + +T G L++L++ I+ AL + L NC LE L +Y V + M ++P++K + A
Sbjct: 15 LPKELLLRIFSFLDIVTLCRCAQISKAWNILALDGSNWQRIDLFNFQTDVEGRVVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKI--TDSTCYSLSRFCSKLKHLDLTSCVSITNSSLKGISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLR---GCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAARCSHLTDAGF--TLLARNCHELEKMDLEECILITDSTLIQLSIHCPKLQALSLSHC---ELITDDGILHLSNSTCGHERLRVLELDNCLLITDVALEH-LENCRGLERLELYDCQQVTRAGIKRMRAQLPHVKVHAYFA 401
The following BLAST results are available for this feature:
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