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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010037 ID=TCONS_00010037|Name=TCONS_00010037|organism=Clytia hemisphaerica|type=transcript|length=2446bpRun BLAST on NCBI protein sequence of TCONS_00010037-protein >TCONS_00010037-protein ID=TCONS_00010037-protein|Name=TCONS_00010037-protein|organism=Clytia hemisphaerica|type=polypeptide|length=401bp MALQARGKNIFILVLCFAFFLNNVSGAVEIIVTDCQTVELEFHVTMFTLKRun BLAST on NCBI transcript from alignment at sc0000101:586239..600557- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010037 ID=TCONS_00010037|Name=TCONS_00010037|organism=Clytia hemisphaerica|type=transcript|length=14319bp|location=Sequence derived from alignment at sc0000101:586239..600557- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000101:586239..600557- >TCONS_00010037 ID=TCONS_00010037|Name=TCONS_00010037|organism=Clytia hemisphaerica|type=CDS|length=12060bp|location=Sequence derived from alignment at sc0000101:586239..600557- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00010037 vs. Swiss-Prot (Human)
Match: CTNS (Cystinosin OS=Homo sapiens GN=CTNS PE=1 SV=2) HSP 1 Score: 298.13 bits (762), Expect = 2.220e-92 Identity = 141/253 (55.73%), Postives = 185/253 (73.12%), Query Frame = 2
Query: 509 KEVQVRVVHSLTLQSINVVIGWVYFLAWSISFYPQTIENFRRRSVVGLNFDFLCYNLTGFLAYSFFNVGLFYVKSVQDEYFAQYGGSVIPVQPNDVFFALHAVVLTIVTITQCFFFDRGDQRISNICKGLTSVAWLFAGISLVVTLTGKINWYTYLNFFSYIKLGITLIKYIPQAVMNYRRQSTVGWSIGNVLLDFTGGSFSLIQMFFLAYNNNEWNSIFGDFTKFGLGFFSILFDILFMTQHYILYRHSREY 1267
++ V+ S + IN VIGW+YF+AWSISFYPQ I N+RR+SV+GL+FDF+ NLTGF+AYS FN+GL +V +++++ +Y V PV NDVFF+LHAVVLT++ I QC ++RG QR+S G +AWLFA ++++V G W +L FSYIKL +TL+KY PQA MN+ +ST GWSIGNVLLDFTGGSFSL+QMF +YNN++W IFGD TKFGLG FSI+FD++F QH+ LYR Y
Sbjct: 111 PRIRFLVIRSSAISIINQVIGWIYFVAWSISFYPQVIMNWRRKSVIGLSFDFVALNLTGFVAYSVFNIGLLWVPYIKEQFLLKYPNGVNPVNSNDVFFSLHAVVLTLIIIVQCCLYERGGQRVSWPAIGFLVLAWLFAFVTMIVAAVGVTTWLQFLFCFSYIKLAVTLVKYFPQAYMNFYYKSTEGWSIGNVLLDFTGGSFSLLQMFLQSYNNDQWTLIFGDPTKFGLGVFSIVFDVVFFIQHFCLYRKRPGY 363 The following BLAST results are available for this feature:
BLAST of TCONS_00010037 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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