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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010028 ID=TCONS_00010028|Name=TCONS_00010028|organism=Clytia hemisphaerica|type=transcript|length=1100bp
ACAAGATCCAAAAAAATGGCCGCCAAAAATCGAAGGCCACCAAATTTGGA
ACTACTCGTCCATGTAATTTTGCTAATTATGGTCTAATTATCATGAAATa
tgtcaagaaattggattggtttgattttagaataattatattatgaaata
attttatttgaatGAGGAAATCTGGTCAAAACAtcgatattttataaaaa
caagatGGACGCTTGTCTTTGGTGATAAAGGTTCTCAGTACAACTGTTGC
AAACTGTTTGAAGTATAGAAACAATCCAGAAACAAAGGGTACAGAAGAAT
TCTGTCGAAACTTCGATTATTTTTTCGACTGCCTCAATGGGCAATATGAA
AGGCAAGGCATTGTTACAAAGAAGCCAGCACTAAACCCATACAAATCAGT
CAACGATCCTCGTTTTGATTGGCTAGAGAAGGACTTCATTAAAGATTACA
TTATACAATGGCAAGAAGAAGCAAAATCACAAATACACTTGACAAAGAAG
GAGAGAAACAAGCTATGTTTGAGCCAACCCACATTTGAAGGATTGCAGAT
CACAGTCAAGTCAACAGTGCGACTAATCAAAGATCTTCTTTTGGAATACC
CTGGCTTTTATGTATTAAGTGGCAAATTTTCTCAGGATCCCCTTGAACAG
CACTTTTCAGCACAACGAAGGAAGTGTGGTTTCAATACAAATCCAACAGA
GGACCAATATGCTCACAGTGAACTTGGTTTGCACAGTGCAAAATCTAAGA
ATGTTGCAAGTTTGAATGGAAACTGTACCATACCTAAGGAAAATCAACAA
CAGTTCATGGAAGATGTCGGCATACCCTTGAAGCGTCGAAAGCGCAAATA
AAGGtctttctgttctttttttagtttttaactTAGAGATTTTTGCAGGG
ATCTAGGTTCAAAATCTCAAATTACCATTTTATTAGGTGTTTTGAAAATC
AGAATCATACAATACAACTTTTTTAAACTATTCTTACACCATTCACTTAT
ACAACTATTCTTACACTATTCACtatacaactttttttatactATTCTTA
CACTATTCACGCTTTTTACAACAACACAACactgttttgtttcattttca Run BLAST on NCBI transcript from alignment at sc0000101:481464..489209- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010028 ID=TCONS_00010028|Name=TCONS_00010028|organism=Clytia hemisphaerica|type=transcript|length=7746bp|location=Sequence derived from alignment at sc0000101:481464..489209- (Clytia hemisphaerica)
ACAAGATCCAAAAAAATGGCCGCCAAAAATCGAAGGCCACCAAATTTGGA
ACTACTCGTCCATGTAATTTTGCTAATTATGGTCTAATTATCATGAAATA
TGTCAAGAAATTGGATTGGTTTGATTTTAGAATAATTATATTATGAAATA
ATTTTATTTGAATGAGGAAATCTGGTCAAAACATCGATATTTTATAAAAA
CAAGATGGACGCTTGTCTTTGGTGATAAAGGTAAGGTACTACTTAAAATG
GGTCTGAAATAGATATTTAAAGTTTTTTTTTGTGATTGAAAATAATTTTC
TAGCATTGCAAAAGGGTTAAAGTTTCAAATTATGAAGGACTCTTTTGTGG
CCTGGCTCTTTTCAGACTGGCCTGGCTCACTTTTTACATGGGTTAAATTT
GGGCTTATATGTTGAAAGAGAGACAAATGGCTGTATATTTTGATGGTAAA
GCTGCTTATTTCTTATTCGAAATCTCTCTAAAAGTTATAAATTATGAGTA
CCTGTTAGAAAGAAATAATTATTAGAGGTTTAGGGCGCCTAAAATTTTGA
ATTTTAAAAGTTTTTTGGAACAAAAATCTCAGCATTTTACTTCCATCATG
GAGGGCCATGTGAAGCTGCTTGAAAGTTTATGTAGAATCTGTGGAAAAAC
AATCAAATGTGACAAGGGGAGGAATGCTAAAAATGCCATAGACTATGTAG
AAGCTGCAAAGCATTTAGATGTATTTCTTAATGATGATGTTGAAAGTGTC
CATCCAAAGAAAGTTTGTGAAAGTTGCCGAAAGACCCTTTCAAAGATAAA
CATTGCTTTGAAAAAAGAACAACAGTATTGCCCAAAAGTTGAAGTGTTTT
GTTTTAAACCACATACTGAAAAGGGATGTTTGATTTGCCACCATAAGAAA
TCATCTGTAGCTGCTATATGTAGGAATAGAGTGCTGAAGCAGGTTAACCA
GTACTCTGAGTCAAGTTACTGTGTAAATGGTGATAAAACAAGCCTTTTTG
AACCTGCTGAACAACATGTTGATAGTAAAGATGCATTTTCACCCATCACA
GTTAAAGATTTTGCTGAGCAATTGGGCTTTGCTTTGGTTACGTCTGATGA
TAATACACGTGTCATGTATGCAATATTTGTTAGGCGAGATTCACCCTATT
TGCAAATTCGTAGTCTTTTAACAGTCACTGTGACTAATGACTGTTGCTGG
AAAGTTCACATCGATGACAAAGATGTAACTTCAGAAGAGATTTTCAGTAG
TTTTAATGAAGTCCTAGATGAAGATAGCTGTAAATCAATCCTCTCTTTAT
GTACTGAGGCAGTATTCTGTTCTGGAAACGAAGATTTTGCTGATTTGTGT
GAGAGCAGAAGGGAAGAAGGGAACAAAGTTATGTTTAAAGATAGACAGGA
CACAATAATTGCACGTGAATGTCAAGATGTCATTTGTATGGCATTGGGGT
TAGAATCAACAATTAGACACAATTCTTGCAAAATGCTAATTGCACCTTCG
AAAAACCAATCACGATGTGACATTTGTACCCAATATCGTTTGACACTGGC
TGCTTTAAAATCAAAAAACAAAAAAGGAAACGTCCCTTTTGCTAAAAGAG
ACTTTGAAGTACCTGCTTCTTCTTCAGTTCCTCATAAGTTTATGAACAAT
AAACAAATGCAAAGTAAGCTTACTAACAGAAAAATTGAAAATCATGCGTT
GAAAAAGGAAAACAAACAATTAAGAGAGAGAATAAAAAATCTCATCGAAA
ATGAAGGAGTTGGTACTGGTGACGACATGCACAATGCCTTAAATGAAATA
CTAAATGAAAAGAAAGCCTCGAGAGCAAAAGACTTTCAATTTCCTGAAGG
ATCTGCAATGGAAATATTATTTGAAGAACAAATGAAAACTTCTAAATTGT
CAAGTGCCAAACAAATGCGATGGCACCCACTTGTTATAAGATGGTGTCTT
GGCATTTACCACACTTCACCAGCTGCATATGAGTTTATCAAAAAGTCTTC
TTTTTTAAAGTTACCTCATAAAACAACCCTGTTAGACTACACGCTATACA
CCACACCTGGCTCTGGTTTTAATGCAGATGTTCTACAGCGCTTGTACGAT
GAAGCAAATGTTGAAAATTTACAACTACACCAAAAAAACATTTCATTACT
ATTTGATGAAATGAAAATAAAGGCTGATCTTGTCTACAACAAGACAACGG
GTAAATTGATTGGTTTTGTTGACCTTGACAAAATAACAAATGAAATTGAA
AAGTTAGAAAGAGTCTGCTCCAAAGATGTTTCACAAGATAAGGAAATTGC
GACCCACGTCATGGCTGTAATGGTTTGTGGAATCTACACAAACTTTCAGT
TCACCATTGCATATTTCCCAACTAAAGCAATAACCTGTGATGTGATATTC
TAGTAGGGGGAAATTTGTAAAATCGCTCGATTTTTTTAGTCAAAGCACTT
GTTATACATTTTAGGAAAGCTAAGGGGTAGGGGAATCAAAATAACNNNNN
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CCTGTGATGTGATATTCCCTATTGCTTGGAATGCAGTTTGTTCAGTAGAG
TCGATTGGTCTACTTGTCAGGTGCTTCATATCTGATGGTGCATCATCTAA
TAGGAAGTTCTATAAGTTACATTTGAAACCTGGTTCCAAAGAGCTTCCTT
ACTTTGCAATCAACCTGTGCAATAAGTCAAGAAAAATTTACCTAATCTGC
GATGTGCCCCATTTGATAAAAACAGTTAGAAACAATTGGGAAAATTCTCA
TGGCAACAGGAATTCTAGAAATTTGATTGTAAGTGTTTATGACATAAAAG
TATCAAAATTTTATACCTTGCTGAAAAAGTCCTAAGATTTCATTATATTT
GAAAATAGGCTTTGAGAGTCAAAAATTGCATTAATTAACATTTAATTCAA
GTCTTACAGTACAGAATTTGTTATTATGTTCGTCATTACAGATTAAGATT
ATTACTACCTTTCAGTTCAACAGTTACTCGATTAGCTGGGGTCATCTTGT
CTCACTAAAGAATTATGATTCAAATCCAACAACTCCTGGTCTATACATGA
CAAAGCTTAGAAAAGAACATGTAAAGCTGACACCTTCTTCAAGAATGAAA
GTTAGGCTTGCTGCACAGGTTAGTTTGAATAGTTCACAAGATTTTTATTT
GAAATGTTGTGCAATTGAAAATTTAGACCAACTGCCCATATGCTATACCA
AACTAAGCATAGTCATATTTTCTCAATAGTAATTTTGATTATTTTAATTC
TTTTAAATCAACATTAACTGCAACTGGTTATTTCTGTTTCAGGTTCTCAG
TACAACTGTTGCAAACTGTTTGAAGTATAGAAACAATCCAGAAACAAAGG
GTACAGAAGAATTCTGTCGAAACTTCGATTATTTTTTCGACTGCCTCAAT
GGGCAATATGAAAGGCAAGGCATTGTTACAAAGAAGCCAGCACTAAACCC
ATACAAATCAGTCAACGATCCTCGTTTTGATGTGAGTGAAATTTTAGATA
GTCACAATTGACATTTTCAGATTAAAGTACTTTTCTTCACATAGGATGTT
CGGATTTTGGAGTTAAAATGTTCAAGAAATTTTAGTTTTTCTGTTATTTA
TTAACATTCTATAAACTTTTTTCTACCTAGTGGCTAGAGAAGGACTTCAT
TAAAGATTACATTATACAATGGCAAGAAGAAGCAAAATCACAAATACACT
TGACAAAGAAGGAGAGAAACAAGCTATGTTTGAGCCAACCCACATTTGAA
GGATTGCAGATCACAGGTTAAATTTCCTTGACCAAGTTTTTGGTATCATA
TGATTATTTTTCTTCAGTTTTTTTCTACCGTGGTATAATATCAATAATCA
AAATTCTTTTTTCATGATATTTCAAGAAAAATGTTTTCAACAGCTGAGTA
CAAAAGGTAAAAAAATTCAATGTTTTAAAATTTTGACGAGTTATAGAGAT
TATTGAATTGTTTATAATTGTTTAATTTTTGTTCATTCTACAAATATTTA
GTCAAGTCAACAGTGCGACTAATCAAAGATCTTCTTTTGGAATACCCTGG
CTTTTATGTATTAAGTGGCAAATTTTCTCAGGATCCCCTTGAACAGCACT
TTTCAGCACAACGAAGGAAGTGTGGTTTCAATACAAATCCAACAGAGGAC
CAATATGCTCACAGTGAACTTGGTTTGCACAGTGCAAAATCTAAGAATGT
TGCAAGTTTGAATGGAAACTGTACCATACCTAAGGAAAATCAACAACAGT
TCATGGAAGATGTCGGCATACCCTTGAAGCGTCGAAAGCGCAAATAAAGG
TCTTTCTGTTCTTTTTTTAGTTTTTAACTTAGAGATTTTTGCAGGGATCT
AGGTTCAAAATCTCAAATTACCATTTTATTAGGTGTTTTGAAAATCAGAA
TCATACAATACAACTTTTTTAAACTATTCTTACACCATTCACTTATACAA
CTATTCTTACACTATTCACTATACAACTTTTTTTATACTATTCTTACACT
ATTCACGCTTTTTACAACAACACAACACTGTTTTGTTTCATTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010028-exon-sc0000101-1575043694:488980..489209 | TCONS_00010028-exon-sc0000101-1575043694:488980..489209 | Clytia hemisphaerica | exon |
| TCONS_00010028-exon-sc0000101-1575043694:482529..482717 | TCONS_00010028-exon-sc0000101-1575043694:482529..482717 | Clytia hemisphaerica | exon |
| TCONS_00010028-exon-sc0000101-1575043694:482244..482379 | TCONS_00010028-exon-sc0000101-1575043694:482244..482379 | Clytia hemisphaerica | exon |
| TCONS_00010028-exon-sc0000101-1575043694:481464..482008 | TCONS_00010028-exon-sc0000101-1575043694:481464..482008 | Clytia hemisphaerica | exon |
| TCONS_00010028-exon-sc0000101-1510915933:488980..489209 | TCONS_00010028-exon-sc0000101-1510915933:488980..489209 | Clytia hemisphaerica | exon |
| TCONS_00010028-exon-sc0000101-1510915933:482529..482717 | TCONS_00010028-exon-sc0000101-1510915933:482529..482717 | Clytia hemisphaerica | exon |
| TCONS_00010028-exon-sc0000101-1510915933:482244..482379 | TCONS_00010028-exon-sc0000101-1510915933:482244..482379 | Clytia hemisphaerica | exon |
| TCONS_00010028-exon-sc0000101-1510915933:481464..482008 | TCONS_00010028-exon-sc0000101-1510915933:481464..482008 | Clytia hemisphaerica | exon |
| TCONS_00010028-exon-sc0000101-1491911889:488980..489209 | TCONS_00010028-exon-sc0000101-1491911889:488980..489209 | Clytia hemisphaerica | exon |
| TCONS_00010028-exon-sc0000101-1491911889:482529..482717 | TCONS_00010028-exon-sc0000101-1491911889:482529..482717 | Clytia hemisphaerica | exon |
| TCONS_00010028-exon-sc0000101-1491911889:482244..482379 | TCONS_00010028-exon-sc0000101-1491911889:482244..482379 | Clytia hemisphaerica | exon |
| TCONS_00010028-exon-sc0000101-1491911889:481464..482008 | TCONS_00010028-exon-sc0000101-1491911889:481464..482008 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000101 | supercontig | sc0000101:481464..489209 - |
Blast
The following BLAST results are available for this feature:
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