TCONS_00010026 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010026
Unique NameTCONS_00010026
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1326

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010026 ID=TCONS_00010026|Name=TCONS_00010026|organism=Clytia hemisphaerica|type=transcript|length=1326bp
AAAAAAATGGCCGCCAAAAATCGAAGGCCACCAAATTTGGAACTACTCGT
CCATGTAATTTTGCTAATTATGGTCTAATTATCATGAAATatgtcaagaa
attggattggtttgattttagaataattatattatgaaataattttattt
gaatGAGGAAATCTGGTCAAAACAtcgatattttataaaaacaagatGGA
CGCTTGTCTTTGGTGATAAAGGTTCTCAGTACAACTGTTGCAAACTGTTT
GAAGTATAGAAACAATCCAGAAACAAAGGGTACAGAAGAATTCTGTCGAA
ACTTCGATTATTTTTTCGACTGCCTCAATGGGCAATATGAAAGGCAAGGC
ATTGTTACAAAGAAGCCAGCACTAAACCCATACAAATCAGTCAACGATCC
TCGTTTTGATTGGCTAGAGAAGGACTTCATTAAAGATTACATTATACAAT
GGCAAGAAGAAGCAAAATCACAAATACACTTGACAAAGAAGGAGAGAAAC
AAGCTATGTTTGAGCCAACCCACATTTGAAGGATTGCAGATCACAGGTTA
AATTTCCTTGACCAAGTTTTTGGTATCATATGATtatttttcttcagttt
ttttctaccgtggtataatatcaataatcaaaattcttttttcatgatat
ttcaagaaaaatgttttcaacagCTGAGTACaaaaggtaaaaaaattcaa
tgttttaaaattttgacgaGTTATAGAGATTATTGAATTGTTTATAATTG
TTTAATTTTTGTTCATTCTACAAATATTTAGTCAAGTCAACAGTGCGACT
AATCAAAGATCTTCTTTTGGAATACCCTGGCTTTTATGTATTAAGTGGCA
AATTTTCTCAGGATCCCCTTGAACAGCACTTTTCAGCACAACGAAGGAAG
TGTGGTTTCAATACAAATCCAACAGAGGACCAATATGCTCACAGTGAACT
TGGTTTGCACAGTGCAAAATCTAAGAATGTTGCAAGTTTGAATGGAAACT
GTACCATACCTAAGGAAAATCAACAACAGTTCATGGAAGATGTCGGCATA
CCCTTGAAGCGTCGAAAGCGCAAATAAAGGtctttctgttctttttttag
tttttaactTAGAGATTTTTGCAGGGATCTAGGTTCAAAATCTCAAATTA
CCATTTTATTAGGTGTTTTGAAAATCAGAATCATACAATACAACTTTTTT
AAACTATTCTTACACCATTCACTTATACAACTATTCTTACACTATTCACt
atacaactttttttatactATTCTTACACTATTCACGCTTTTTACAACAA
CACAACactgttttgtttcattttca
Run BLAST on NCBI

transcript from alignment at sc0000101:481464..489200-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010026 ID=TCONS_00010026|Name=TCONS_00010026|organism=Clytia hemisphaerica|type=transcript|length=7737bp|location=Sequence derived from alignment at sc0000101:481464..489200- (Clytia hemisphaerica)
AAAAAAATGGCCGCCAAAAATCGAAGGCCACCAAATTTGGAACTACTCGT
CCATGTAATTTTGCTAATTATGGTCTAATTATCATGAAATATGTCAAGAA
ATTGGATTGGTTTGATTTTAGAATAATTATATTATGAAATAATTTTATTT
GAATGAGGAAATCTGGTCAAAACATCGATATTTTATAAAAACAAGATGGA
CGCTTGTCTTTGGTGATAAAGGTAAGGTACTACTTAAAATGGGTCTGAAA
TAGATATTTAAAGTTTTTTTTTGTGATTGAAAATAATTTTCTAGCATTGC
AAAAGGGTTAAAGTTTCAAATTATGAAGGACTCTTTTGTGGCCTGGCTCT
TTTCAGACTGGCCTGGCTCACTTTTTACATGGGTTAAATTTGGGCTTATA
TGTTGAAAGAGAGACAAATGGCTGTATATTTTGATGGTAAAGCTGCTTAT
TTCTTATTCGAAATCTCTCTAAAAGTTATAAATTATGAGTACCTGTTAGA
AAGAAATAATTATTAGAGGTTTAGGGCGCCTAAAATTTTGAATTTTAAAA
GTTTTTTGGAACAAAAATCTCAGCATTTTACTTCCATCATGGAGGGCCAT
GTGAAGCTGCTTGAAAGTTTATGTAGAATCTGTGGAAAAACAATCAAATG
TGACAAGGGGAGGAATGCTAAAAATGCCATAGACTATGTAGAAGCTGCAA
AGCATTTAGATGTATTTCTTAATGATGATGTTGAAAGTGTCCATCCAAAG
AAAGTTTGTGAAAGTTGCCGAAAGACCCTTTCAAAGATAAACATTGCTTT
GAAAAAAGAACAACAGTATTGCCCAAAAGTTGAAGTGTTTTGTTTTAAAC
CACATACTGAAAAGGGATGTTTGATTTGCCACCATAAGAAATCATCTGTA
GCTGCTATATGTAGGAATAGAGTGCTGAAGCAGGTTAACCAGTACTCTGA
GTCAAGTTACTGTGTAAATGGTGATAAAACAAGCCTTTTTGAACCTGCTG
AACAACATGTTGATAGTAAAGATGCATTTTCACCCATCACAGTTAAAGAT
TTTGCTGAGCAATTGGGCTTTGCTTTGGTTACGTCTGATGATAATACACG
TGTCATGTATGCAATATTTGTTAGGCGAGATTCACCCTATTTGCAAATTC
GTAGTCTTTTAACAGTCACTGTGACTAATGACTGTTGCTGGAAAGTTCAC
ATCGATGACAAAGATGTAACTTCAGAAGAGATTTTCAGTAGTTTTAATGA
AGTCCTAGATGAAGATAGCTGTAAATCAATCCTCTCTTTATGTACTGAGG
CAGTATTCTGTTCTGGAAACGAAGATTTTGCTGATTTGTGTGAGAGCAGA
AGGGAAGAAGGGAACAAAGTTATGTTTAAAGATAGACAGGACACAATAAT
TGCACGTGAATGTCAAGATGTCATTTGTATGGCATTGGGGTTAGAATCAA
CAATTAGACACAATTCTTGCAAAATGCTAATTGCACCTTCGAAAAACCAA
TCACGATGTGACATTTGTACCCAATATCGTTTGACACTGGCTGCTTTAAA
ATCAAAAAACAAAAAAGGAAACGTCCCTTTTGCTAAAAGAGACTTTGAAG
TACCTGCTTCTTCTTCAGTTCCTCATAAGTTTATGAACAATAAACAAATG
CAAAGTAAGCTTACTAACAGAAAAATTGAAAATCATGCGTTGAAAAAGGA
AAACAAACAATTAAGAGAGAGAATAAAAAATCTCATCGAAAATGAAGGAG
TTGGTACTGGTGACGACATGCACAATGCCTTAAATGAAATACTAAATGAA
AAGAAAGCCTCGAGAGCAAAAGACTTTCAATTTCCTGAAGGATCTGCAAT
GGAAATATTATTTGAAGAACAAATGAAAACTTCTAAATTGTCAAGTGCCA
AACAAATGCGATGGCACCCACTTGTTATAAGATGGTGTCTTGGCATTTAC
CACACTTCACCAGCTGCATATGAGTTTATCAAAAAGTCTTCTTTTTTAAA
GTTACCTCATAAAACAACCCTGTTAGACTACACGCTATACACCACACCTG
GCTCTGGTTTTAATGCAGATGTTCTACAGCGCTTGTACGATGAAGCAAAT
GTTGAAAATTTACAACTACACCAAAAAAACATTTCATTACTATTTGATGA
AATGAAAATAAAGGCTGATCTTGTCTACAACAAGACAACGGGTAAATTGA
TTGGTTTTGTTGACCTTGACAAAATAACAAATGAAATTGAAAAGTTAGAA
AGAGTCTGCTCCAAAGATGTTTCACAAGATAAGGAAATTGCGACCCACGT
CATGGCTGTAATGGTTTGTGGAATCTACACAAACTTTCAGTTCACCATTG
CATATTTCCCAACTAAAGCAATAACCTGTGATGTGATATTCTAGTAGGGG
GAAATTTGTAAAATCGCTCGATTTTTTTAGTCAAAGCACTTGTTATACAT
TTTAGGAAAGCTAAGGGGTAGGGGAATCAAAATAACNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGCAATAACCTGTGATG
TGATATTCCCTATTGCTTGGAATGCAGTTTGTTCAGTAGAGTCGATTGGT
CTACTTGTCAGGTGCTTCATATCTGATGGTGCATCATCTAATAGGAAGTT
CTATAAGTTACATTTGAAACCTGGTTCCAAAGAGCTTCCTTACTTTGCAA
TCAACCTGTGCAATAAGTCAAGAAAAATTTACCTAATCTGCGATGTGCCC
CATTTGATAAAAACAGTTAGAAACAATTGGGAAAATTCTCATGGCAACAG
GAATTCTAGAAATTTGATTGTAAGTGTTTATGACATAAAAGTATCAAAAT
TTTATACCTTGCTGAAAAAGTCCTAAGATTTCATTATATTTGAAAATAGG
CTTTGAGAGTCAAAAATTGCATTAATTAACATTTAATTCAAGTCTTACAG
TACAGAATTTGTTATTATGTTCGTCATTACAGATTAAGATTATTACTACC
TTTCAGTTCAACAGTTACTCGATTAGCTGGGGTCATCTTGTCTCACTAAA
GAATTATGATTCAAATCCAACAACTCCTGGTCTATACATGACAAAGCTTA
GAAAAGAACATGTAAAGCTGACACCTTCTTCAAGAATGAAAGTTAGGCTT
GCTGCACAGGTTAGTTTGAATAGTTCACAAGATTTTTATTTGAAATGTTG
TGCAATTGAAAATTTAGACCAACTGCCCATATGCTATACCAAACTAAGCA
TAGTCATATTTTCTCAATAGTAATTTTGATTATTTTAATTCTTTTAAATC
AACATTAACTGCAACTGGTTATTTCTGTTTCAGGTTCTCAGTACAACTGT
TGCAAACTGTTTGAAGTATAGAAACAATCCAGAAACAAAGGGTACAGAAG
AATTCTGTCGAAACTTCGATTATTTTTTCGACTGCCTCAATGGGCAATAT
GAAAGGCAAGGCATTGTTACAAAGAAGCCAGCACTAAACCCATACAAATC
AGTCAACGATCCTCGTTTTGATGTGAGTGAAATTTTAGATAGTCACAATT
GACATTTTCAGATTAAAGTACTTTTCTTCACATAGGATGTTCGGATTTTG
GAGTTAAAATGTTCAAGAAATTTTAGTTTTTCTGTTATTTATTAACATTC
TATAAACTTTTTTCTACCTAGTGGCTAGAGAAGGACTTCATTAAAGATTA
CATTATACAATGGCAAGAAGAAGCAAAATCACAAATACACTTGACAAAGA
AGGAGAGAAACAAGCTATGTTTGAGCCAACCCACATTTGAAGGATTGCAG
ATCACAGGTTAAATTTCCTTGACCAAGTTTTTGGTATCATATGATTATTT
TTCTTCAGTTTTTTTCTACCGTGGTATAATATCAATAATCAAAATTCTTT
TTTCATGATATTTCAAGAAAAATGTTTTCAACAGCTGAGTACAAAAGGTA
AAAAAATTCAATGTTTTAAAATTTTGACGAGTTATAGAGATTATTGAATT
GTTTATAATTGTTTAATTTTTGTTCATTCTACAAATATTTAGTCAAGTCA
ACAGTGCGACTAATCAAAGATCTTCTTTTGGAATACCCTGGCTTTTATGT
ATTAAGTGGCAAATTTTCTCAGGATCCCCTTGAACAGCACTTTTCAGCAC
AACGAAGGAAGTGTGGTTTCAATACAAATCCAACAGAGGACCAATATGCT
CACAGTGAACTTGGTTTGCACAGTGCAAAATCTAAGAATGTTGCAAGTTT
GAATGGAAACTGTACCATACCTAAGGAAAATCAACAACAGTTCATGGAAG
ATGTCGGCATACCCTTGAAGCGTCGAAAGCGCAAATAAAGGTCTTTCTGT
TCTTTTTTTAGTTTTTAACTTAGAGATTTTTGCAGGGATCTAGGTTCAAA
ATCTCAAATTACCATTTTATTAGGTGTTTTGAAAATCAGAATCATACAAT
ACAACTTTTTTAAACTATTCTTACACCATTCACTTATACAACTATTCTTA
CACTATTCACTATACAACTTTTTTTATACTATTCTTACACTATTCACGCT
TTTTACAACAACACAACACTGTTTTGTTTCATTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005620XLOC_005620Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010026-exon-sc0000101-1575043694:488980..489200TCONS_00010026-exon-sc0000101-1575043694:488980..489200Clytia hemisphaericaexon
TCONS_00010026-exon-sc0000101-1575043694:482529..482717TCONS_00010026-exon-sc0000101-1575043694:482529..482717Clytia hemisphaericaexon
TCONS_00010026-exon-sc0000101-1575043694:481464..482379TCONS_00010026-exon-sc0000101-1575043694:481464..482379Clytia hemisphaericaexon
TCONS_00010026-exon-sc0000101-1510915933:488980..489200TCONS_00010026-exon-sc0000101-1510915933:488980..489200Clytia hemisphaericaexon
TCONS_00010026-exon-sc0000101-1510915933:482529..482717TCONS_00010026-exon-sc0000101-1510915933:482529..482717Clytia hemisphaericaexon
TCONS_00010026-exon-sc0000101-1510915933:481464..482379TCONS_00010026-exon-sc0000101-1510915933:481464..482379Clytia hemisphaericaexon
TCONS_00010026-exon-sc0000101-1491911889:488980..489200TCONS_00010026-exon-sc0000101-1491911889:488980..489200Clytia hemisphaericaexon
TCONS_00010026-exon-sc0000101-1491911889:482529..482717TCONS_00010026-exon-sc0000101-1491911889:482529..482717Clytia hemisphaericaexon
TCONS_00010026-exon-sc0000101-1491911889:481464..482379TCONS_00010026-exon-sc0000101-1491911889:481464..482379Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000101supercontigsc0000101:481464..489200 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.127326	0.400365	0	0.138875	0	0	0	0.378911	0	0.814447	0	0.237176	0.445669	0.0936053	0.0266304	0.241097	0.494582	0.961216	0.263217	0.145818	0.00552661	0.418933	0	0.533279	0.696563	0.618073	0	0.480261	0.113885	0.599431
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010026 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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