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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009993 ID=TCONS_00009993|Name=TCONS_00009993|organism=Clytia hemisphaerica|type=transcript|length=2850bpRun BLAST on NCBI protein sequence of TCONS_00009993-protein >TCONS_00009993-protein ID=TCONS_00009993-protein|Name=TCONS_00009993-protein|organism=Clytia hemisphaerica|type=polypeptide|length=513bp MSSILRMRANYKLARFSLSSVKFFSTSGEQNAKIASSAQEAIGGISNNSKRun BLAST on NCBI transcript from alignment at sc0000101:448350..474242+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009993 ID=TCONS_00009993|Name=TCONS_00009993|organism=Clytia hemisphaerica|type=transcript|length=25893bp|location=Sequence derived from alignment at sc0000101:448350..474242+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000101:448350..474242+ >TCONS_00009993 ID=TCONS_00009993|Name=TCONS_00009993|organism=Clytia hemisphaerica|type=CDS|length=24672bp|location=Sequence derived from alignment at sc0000101:448350..474242+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009993 vs. Swiss-Prot (Human)
Match: SCOT1 (Succinyl-CoA:::3-ketoacid coenzyme A transferase 1, mitochondrial OS=Homo sapiens GN=OXCT1 PE=1 SV=1) HSP 1 Score: 707.983 bits (1826), Expect = 0.000e+0 Identity = 343/516 (66.47%), Postives = 417/516 (80.81%), Query Frame = 1
Query: 172 IMSSILRMRANYKL--ARFSLSSVKFFSTSGEQNAKIASSAQEAIGGISNNSKLLVGGFGLCGIPENLITALVASKINELTVVSNNAGVDDFGLGLLLQQRQIKRMISSYVGENKEFERQYLSGELEVELTPQGTLAERIRAGGAGVPAFFTPTGYGTLIHEGGAPIKYNSDGTIAIHSQPREHRVFNDRNYIMEESITGDFALIKAWKADRMGNLIFRKATRNFNAPMARAAKITIAEVEEIVDVGTFSPEDIHIPSVYVDTVILGGDYQKRIEKLTLSSPDEGGKVKAKNEAALMRERIIRRAALEFQDGMYANLGIGMPMLASNFIPPNVNVCLQSENGILGLGPFPQPGEEDADLINAGKETVTIVPGGSFFGSEDSFAMIRGGHIDLTMLGAMQVSQNGDLANWMIPGKMVKGMGGAMDLVSSADTKVVVTMEHCAKGGKHKIMEDCSLPLTGKRCVDLIITEKCVFKVVPGEGLLLTEMSPGCTIPEIQTATGCQFRIADDLQEMQQIED 1713
++SS LR+ A+ + A + V FSTS ++ K + EA+ I + + +LVGGFGLCGIPENLI AL+ + + LT VSNNAGVD+FGLGLLL+ +QIKRM+SSYVGEN EFERQYLSGELEVELTPQGTLAERIRAGGAGVPAF+TPTGYGTL+ EGG+PIKYN DG++AI S+PRE R FN +++I+EE+ITGDFAL+KAWKADR GN+IFRK+ RNFN PM +AA+ T+ EVEEIVD+G F+PEDIHIP +YV +I G Y+KRIE+L++ + G+ K+ +RERII+RAALEF+DGMYANLGIG+P+LASNFI PN+ V LQSENG+LGLGP+P+ E DADLINAGKETVTI+PG SFF S++SFAMIRGGH+DLTMLGAMQVS+ GDLANWMIPGKMVKGMGGAMDLVSSA TKVVVTMEH AKG HKIME C+LPLTGK+CV+ IITEK VF V +GL L E+ G T+ ++Q +TGC F ++ L MQQI +
Sbjct: 6 LLSSGLRLCASARGSGATWYKGCVCSFSTSAHRHTKFYTDPVEAVKDIPDGATVLVGGFGLCGIPENLIDALLKTGVKGLTAVSNNAGVDNFGLGLLLRSKQIKRMVSSYVGENAEFERQYLSGELEVELTPQGTLAERIRAGGAGVPAFYTPTGYGTLVQEGGSPIKYNKDGSVAIASKPREVREFNGQHFILEEAITGDFALVKAWKADRAGNVIFRKSARNFNLPMCKAAETTVVEVEEIVDIGAFAPEDIHIPQIYVHRLIKGEKYEKRIERLSIRKEGD-GEAKSAKPGDDVRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNITVHLQSENGVLGLGPYPRQHEADADLINAGKETVTILPGASFFSSDESFAMIRGGHVDLTMLGAMQVSKYGDLANWMIPGKMVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDKKKGLTLIELWEGLTVDDVQKSTGCDFAVSPKLMPMQQIAN 520 The following BLAST results are available for this feature:
BLAST of TCONS_00009993 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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