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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009976 ID=TCONS_00009976|Name=TCONS_00009976|organism=Clytia hemisphaerica|type=transcript|length=675bp
AAACGATAAAAATAAGTTTAAATGTGTAAATAGTCCATAAAAGAATGGAA
CGTCCTACCAAGAAACCATGTTCATTTTTTGAGGAATATCAGAGGACATC
TTTGTTACAGAATGCTTTTCCATTACCTTACGTCATGGCACACAAAGAAG
ACAATGCATTGTATTTGAATGCTGATCGAATCAGAGACAATGAATGGAAA
TCTATCTTGACTGCTCTTCGTAAAGATGCTACTTTGAAATATATTACTAT
ATCAAGTGCATGGCAAAAGCCCAGTCATGGTGGTTTGGAGAAGTTCAGCT
CACAGAAAAAGAAGTTACCAATCAGAACTCGATCTTTGAATTCCCAACTC
TCCAGGGTTTTAAAAGACGTTTTGATTGGAAACCCCTGTTTGGAGTGTCT
TGTGCTGCAAAATATACTGCTCAGAGAAGAAGACATCTATATTTTGTCAA
AGGCACTTCCAAAGGTGACAACACTTAAGTTTCTTTCATTCGAACAATGT
CCTGTCCGCGACAAAGGCTTCAATCACTTAATGGAAGGGATCCGAAAAGC
AAAGACTATTTCTTCCATCAATTTCACAAAATGCGCCTTAACATGGAAAT
CTATGGAAGCTTTGGCAAGTGTTATAAAGTACCAAAGTTCACAACGTCAT
GAGGTAGCTTGGCAAGCCAGTCTCA Run BLAST on NCBI transcript from alignment at sc0000101:105051..111762+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009976 ID=TCONS_00009976|Name=TCONS_00009976|organism=Clytia hemisphaerica|type=transcript|length=6712bp|location=Sequence derived from alignment at sc0000101:105051..111762+ (Clytia hemisphaerica)
AAACGATAAAAATAAGTTTAAATGTGTAAATAGTCCATAAAAGAATGGAA
CGTCCTACCAAGAAACCATGTTCATTTTTTGAGGAATATCAGAGGACATC
TTTGTTACAGAATGCTTTTCCATTACCTTACGTCATGGCACACAAAGAAG
ACAATGCATTGTATTTGAATGCTGATCGAATCAGAGACAATGAATGGAAA
TCTATCTTGACTGCTCTTCGTAAAGATGCTACTTTGAAATATATTACTAT
ATCAAGTGCATGGCAAAAGCCCAGTCATGGTGGTATGTACAATacaatgt
ttaattttttttttaacttgaattaTCAGTAAAGCTTTTTGGACCTGAGG
TCATGTAAATTAATGTTTGTCCGTTTGTTCGTCTGTTtctctgttaccag
cttttcttgtgatcaattcagttttttttctgattttttgcacaaagatg
caaaatggtaatgcccaaaatgtgacggtgctcaatttttctaaacaaat
ttttttaggcaaatttCGACCAAAATTACCTATTTTCCTTCACTAATTTC
TCTCCATTGTAAATATCCTTCGTAGTTCAAGGTCAGGAACAAAATTAATA
TATCTATAAAGGTCCTAGAAAGTAAAATTCTTTAGAAATTGGATTAGGTC
TTGTTGGTTTCATTTAGGTTTGGAGAAGTTCAGCTCACAGAAAAAGAAGT
TACCAATCAGAACTCGATCTTTGAATTCCCAACTCTCCAGGTATgttcaa
ttgtgtaatttttatgaaattttctctGAGCTACGATTTTAACCATTATT
ACTTCGTATTACTACTTACTGCGCAAGTTCTATGCGTGAAGTGACTAAAA
AAGATGCTTTTATACACACTCTTTATACACTATTTTATACACTGcttaaa
aacattgaaagttattcattgaattttttaagCATATTATTGAATTCAAA
AAAAGTGCCTACGAAGGTTAAGTAAATCATTgttcatatatatatatata
gtatgaaaataaaatgttttctcctgtcagatctacaaacaacaaagaat
ggccgaattctttttcctcttagagagacgatgttataaTNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGG
CCtgtacaagatgacaacaaactccaggtagactgacagaagaagaaaac
aaaaaatgaatcaacgAAGGTGTAAACACCTTAGACTCCTTTGGAGCCGA
CTGCCGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGATTTT
CTTACGAACGGCTTTCACTTTTTTCGGACAGGCATTTCTCATTACCAATA
GTTCTTTCTGTTGATATAGTTCCTTAAGTTTTACATCCTCATGCCACGGC
TGGTGTAGTTTTCGGGCAACTATTTTCGGAATCGTTTCGTCTGCAGCTTC
TTGAATAGAAGTAATAAAGTGTTCGTTGAGTTGAGTATTCGATTGCATTT
CTGGCTGAATATACTCAAGCTTGATGGAGAGATTCCTTTTAAAGTTTTGT
TCTGTCTCAGCACGATTCAGGGATTTGAAGTCAAAACGTTTCTTTGGTGA
TTTCATTCGATGTTTTTTATAGCGTGACATTTTGGTGCATGGAGTAGATA
AGTTTGCGATCACCAAACGATGGTCACTATCAAAGTCATATGAGTTGTAT
ACTCGACAATTCATACAATACTGTCTCAACCAGCTACAACAGAGAATAAA
ATCATATACCTTTCTGGTGTTCCCATCTGGCGAGTGCCAAGTATATCTAC
GACAAAGTTTATGATTGAACCACGTATTCAAGACTGAAAGTTTGTACGAT
TGGAAGAGATCATGGAAACGTTCGCCGTTATCGTTGATGACCAAGTCTTC
GATTACACTGTTCTCTCTCAAGGATGAATTGTAGAGTGATGCCGAGGTAG
TAGCATTGAAATCCCCAAGACATATCACTTTTTGATTTGCATTTGTGGTA
ATGATTTGCTTTTTGAGAGTGCTATAGAACAGGTTTTTGGTAGTTATAGC
ACTCTCTTCTGTCGGGGCATAACAGTTTATAACTCTCAGAGAGCAGCCCG
ATACGATAACATCAATAACAATAAGTCTAGAATTAACCTGATAGATCTCA
AGAATGTCAATGTTCGGagcaactttcacaacaaattTCTTTGTTATAAT
CATAGTTATTGAAATATATTGTTATCATTGTTATATTTCCAGGGTTTTAA
AAGACGTTTTGATTGGAAACCCCTGTTTGGAGTGTCTTGTGCTGCAAAAT
ATACTGCTCAGAGAAGAAGACATCTATATTTTGTCAAAGGTACTAAACTT
ACTGTTATGATATGTTTGCTACTTTCAATGTGCCCATTCATTCACTGACG
TTGTGCTAGATTTAGACTAGCGATCAAGTAATGACTTTTTCTTCTACTTG
GACTGTTCATTCCTAAAATTGAGAGATCGAATTGAAGTTTCGAAGTAGAA
GTTATTGAAGTTTCGAAGTAGAAGTTAATCATTTTACATTTGATAATCCT
TCGGGTGAAACTGACAGTAATAGTAATGTACTTTTTTACTTGTTGACAAA
TAAATGTTTAATTCGAGATCGAATTGATAAATATCTGCTATTCATGCATA
GACAAAATTAAGGGAAGCCTTTAACATGCATTTTTTGTGATTGTCTGTGG
AGGTTTGAGACCACATTCACCATtgggaaagaaattttaaagtaTAGAAC
GAGTATGGCAAGCacatttttgttctttttatttgtcgTTGATTGAAact
taaaaaggatttttatATTAGCTTCACACATTcgacttttaaagaatata
ttaacccaATGGGGGGGGGcatgaccttgacggccgacggggacgtgccg
ttGGAGTTCGAAAagttgaccctgtcagatatgaatttttggtaaaGTTG
TGACCAAAAACGTTGTGTCAAAACgaagaattgaaaatttttccaatttc
cacCCTAacaaagtggcaaaaatgactaaaagtagacgaaaaactgaaat
tttttctgatttttaccctgaaaatttGTCCAAATAACCAAAAGTGAACC
CTGTCAGAACCATgtcttgaaaattagtagatttgggaccctgtcagata
tctttttAAGAAcctaaaaagggaccctgaccagcggcacgtcccgtACC
CAATTTTACCTATgtgccccccccctcccccggatATTAACTTTCATACA
TTTTCATATGTGATGTCCTTTGATTTGATTGGAGTCATGGGTTTAATAAT
AGTACGATGTATGAAGATTCTTAGCCTAGGATTGATGTGATTGACCTTAA
CGTAACTATCCAATgtcatttttcatcatttcagGCACTTCCAAAGGTGA
CAACACTTAAGTTTCTTTCATTCGAACAATGTCCTGTCCGCGACAAAGGC
TTCAATCGTAAGTGAGACTTATAATGATTAATTTATTAATAAGTATAACT
TTGAGGGTTTAATTTATAACACTAGTGATCTTTATCTACCCTTAAATTGA
TTTTGCTGGCTTTTAAATTATGGAAATTGATGCATTTCTTAATGGAAATA
ATTTGACGCATCAATAATATAAAATTATAACCATTTAGTTTGGTAGCATT
TTCTAAAGCAGCAGAAAAACAGCTTTAGCTCACTTTCGTGTCGCCTCCCT
AGCACAACTTTTTTGTTAAttatgctttgtcagcataggtGTACCTTCtt
aagaaataagaatttctctCCAACTAATTTCACTTATTGGAACTCATCAG
CACAGCCTGCTAGGCATAGTGATTTATTCAGCATCTCTGAACTATgaaat
cacttgtggttcatACTAAGACGAATAGTGAACAGAAGGGACAGAATATA
TATCATGGAAAACAATAtctaaaataagttttttttcaaataagagtgat
atcgtttccttactcatcaattttaattcacaagctctTTCACAtaggat
tgacacggatgtggagcaagattggccagaaatataaaagaaaagcattt
tttgcttttatcagcataacataacaataggcagacactgttctgatatg
aaatatgtgtctgatatgaaacgggtacacttatggagaaaaaaaatttt
aagtttaacaTTCTGTGTGAAGATTTTTAATGAAGTAGATTGACCTGGAT
TGACAAACATAATGTTATCGAcagtcaaaatctttttttcaatatacaGA
CTTAATGGAAGGGATCCGAAAAGCAAAGACTATTTCTTCCATCAATTTCA
CAAAATGCGCCTTAACATGGAAATCTATGGAAGCTTTGGCAAGTGTTATA
AAGGTACAACAGTTATTagtgtttttttctattttagccaGTATTAGACG
ATCAAGGTAGTATTTCTACTGCGcggttttgaaacttttgaaatgaaATC
GTATCTTTTCTTTATTCAAGAATGAATTTGTCATTTGACATAGTTTCATA
ACTTGACAAAGCAAAGCTTTTCATATCACGAAGAAAGAAGACTGAAAACG
ACAGATTTTAACAGAACATTTTATTACATTTTGCTATATTCTAAGGCCGA
AAACcctctttttatattttaaagcGACAGATGAACTAAGAATACTGTAT
GACAGTAGCTCGAATCTTAGAGAATGCATCTTCTTTATTAACTTCTCTCT
AATATCATAACGGAGGTTTAtgatttattgtttaaaaagtTGCGCCATTA
TCGAAGTAGACGATCGAATGTTGGCTTCCATGATGGCGGAAATGACGTCA
CTTAACAAACCTGAAAAACCTATATATTTATATCGTGATGTTGTGATGTT
GCTTGGCAAGCAAGTCTCATTTTCTCCATCATTTTAGTACCAAAGTTCAC
AACGTCATGAGGTAGCTTGGCAAGCAAGTCTCACTTTTCTCCATCATTTT
AGTACCAAAGTTCACAACGTCATGAGGTAGCTTGGCAAGCAAGTCTCACT
TTCTCCATCATTTTAGTACCAAAGTTCACAACGTCATGAGGTAGCTTGGC
AAGCCAGTCTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009976-exon-sc0000101-1491911889:105051..105332 | TCONS_00009976-exon-sc0000101-1491911889:105051..105332 | Clytia hemisphaerica | exon |
| TCONS_00009976-exon-sc0000101-1510915933:105051..105332 | TCONS_00009976-exon-sc0000101-1510915933:105051..105332 | Clytia hemisphaerica | exon |
| TCONS_00009976-exon-sc0000101-1575043694:105051..105332 | TCONS_00009976-exon-sc0000101-1575043694:105051..105332 | Clytia hemisphaerica | exon |
| TCONS_00009976-exon-sc0000101-1491911889:105718..105790 | TCONS_00009976-exon-sc0000101-1491911889:105718..105790 | Clytia hemisphaerica | exon |
| TCONS_00009976-exon-sc0000101-1510915933:105718..105790 | TCONS_00009976-exon-sc0000101-1510915933:105718..105790 | Clytia hemisphaerica | exon |
| TCONS_00009976-exon-sc0000101-1575043694:105718..105790 | TCONS_00009976-exon-sc0000101-1575043694:105718..105790 | Clytia hemisphaerica | exon |
| TCONS_00009976-exon-sc0000101-1491911889:108943..109039 | TCONS_00009976-exon-sc0000101-1491911889:108943..109039 | Clytia hemisphaerica | exon |
| TCONS_00009976-exon-sc0000101-1510915933:108943..109039 | TCONS_00009976-exon-sc0000101-1510915933:108943..109039 | Clytia hemisphaerica | exon |
| TCONS_00009976-exon-sc0000101-1575043694:108943..109039 | TCONS_00009976-exon-sc0000101-1575043694:108943..109039 | Clytia hemisphaerica | exon |
| TCONS_00009976-exon-sc0000101-1491911889:110085..110157 | TCONS_00009976-exon-sc0000101-1491911889:110085..110157 | Clytia hemisphaerica | exon |
| TCONS_00009976-exon-sc0000101-1510915933:110085..110157 | TCONS_00009976-exon-sc0000101-1510915933:110085..110157 | Clytia hemisphaerica | exon |
| TCONS_00009976-exon-sc0000101-1575043694:110085..110157 | TCONS_00009976-exon-sc0000101-1575043694:110085..110157 | Clytia hemisphaerica | exon |
| TCONS_00009976-exon-sc0000101-1491911889:110950..111053 | TCONS_00009976-exon-sc0000101-1491911889:110950..111053 | Clytia hemisphaerica | exon |
| TCONS_00009976-exon-sc0000101-1510915933:110950..111053 | TCONS_00009976-exon-sc0000101-1510915933:110950..111053 | Clytia hemisphaerica | exon |
| TCONS_00009976-exon-sc0000101-1575043694:110950..111053 | TCONS_00009976-exon-sc0000101-1575043694:110950..111053 | Clytia hemisphaerica | exon |
| TCONS_00009976-exon-sc0000101-1491911889:111717..111762 | TCONS_00009976-exon-sc0000101-1491911889:111717..111762 | Clytia hemisphaerica | exon |
| TCONS_00009976-exon-sc0000101-1510915933:111717..111762 | TCONS_00009976-exon-sc0000101-1510915933:111717..111762 | Clytia hemisphaerica | exon |
| TCONS_00009976-exon-sc0000101-1575043694:111717..111762 | TCONS_00009976-exon-sc0000101-1575043694:111717..111762 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000101 | supercontig | sc0000101:105051..111762 + |
Blast
BLAST of TCONS_00009976 vs. Swiss-Prot (Human)
Match: CEP78 (Centrosomal protein of 78 kDa OS=Homo sapiens GN=CEP78 PE=1 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 2.218e-36 Identity = 73/204 (35.78%), Postives = 114/204 (55.88%), Query Frame = 3
Query: 75 FFEEYQRTSLLQNAFPLPYVMAHKEDNALYLNADRIRDNEWKSILTALRKDATLKYITISS---AWQKPSHGGLEKFSSQKKKLP-IRTRSLNSQLSRVLKDVLIGNPCLECLVLQNILLREEDIYILSKALPKVTTLKFLSFEQCPVRDKGFNHLMEGIRKAKTISSINFTKCALTWKSMEALASVIKYQSSQRHEVAWQASL 674
FF Y+ LQN+ PLP V A + L NADR+R +W +L+ L+ + L ++I S W + + KF + ++P IR + + QL + LK L + L+ L L ++LRE D+ IL+K L K +L LS CP+ D G + +GI+ + T+ ++NFT C LTW+ + +A ++KYQ+ +RHE W SL
Sbjct: 15 FFSHYEYLCALQNSVPLPAVRACLREGVLDFNADRLRGVDWAPLLSTLKINKDLPLVSIKSFFQPWLGDTGSDMNKFC--RSRVPAIRYKDVTFQLCKALKGCLSISSVLKNLELNGLILRERDLTILAKGLNKSASLVHLSLANCPIGDGGLEIICQGIKSSITLKTVNFTGCNLTWQGADHMAKILKYQTMRRHEETWAESL 216
The following BLAST results are available for this feature:
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