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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009973 ID=TCONS_00009973|Name=TCONS_00009973|organism=Clytia hemisphaerica|type=transcript|length=2516bpRun BLAST on NCBI transcript from alignment at sc0000101:105037..118346+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009973 ID=TCONS_00009973|Name=TCONS_00009973|organism=Clytia hemisphaerica|type=transcript|length=13310bp|location=Sequence derived from alignment at sc0000101:105037..118346+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00009973 vs. Swiss-Prot (Human)
Match: CEP78 (Centrosomal protein of 78 kDa OS=Homo sapiens GN=CEP78 PE=1 SV=1) HSP 1 Score: 258.07 bits (658), Expect = 5.475e-74 Identity = 140/387 (36.18%), Postives = 213/387 (55.04%), Query Frame = 2
Query: 89 FFEEYQRTSLLQNAFPLPYVMAHKEDNALYLNADRIRDNEWKSILTALRKDATLKYITISS---AWQKPSHGGLEKFSSQKKKLP-IRTRSLNSQLSRVLKDVLIGNPCLECLVLQNILLREEDIYILSKALPKVTTLKFLSFEQCPVRDKGFNHLMEGIRKAKTISSINFTKCALTWKSMEALASVIKYQSSQRHEVAWQASLRYRKPDLDQMHGLRRVAL-CQNKLGDEGGRILADALKDDIWLKALDLQQCGLSDDSATILMETLKWNKNLVVLDIRRNSFISYQNLRSLIEMVMVNAGGESSEYPWMKASEEIKSDTTFNKRSSTMV----------------NKKQKRNGRRKSLESK---------RSKDHVPWRMAERVR 1159
FF Y+ LQN+ PLP V A + L NADR+R +W +L+ L+ + L ++I S W + + KF + ++P IR + + QL + LK L + L+ L L ++LRE D+ IL+K L K +L LS CP+ D G + +GI+ + T+ ++NFT C LTW+ + +A ++KYQ+ +RHE W SLRYR+PDLD M GLRR+ L C +GD G AD+L +D+WL+ALDLQQCGL+++ A L+E L+ N LVVLDIR+N I + ++++I+ V+ N SEY W+ + + T ++ T++ KK +GR+ SL + +PWR AER +
Sbjct: 15 FFSHYEYLCALQNSVPLPAVRACLREGVLDFNADRLRGVDWAPLLSTLKINKDLPLVSIKSFFQPWLGDTGSDMNKFC--RSRVPAIRYKDVTFQLCKALKGCLSISSVLKNLELNGLILRERDLTILAKGLNKSASLVHLSLANCPIGDGGLEIICQGIKSSITLKTVNFTGCNLTWQGADHMAKILKYQTMRRHEETWAESLRYRRPDLDCMAGLRRITLNCNTLIGDLGACAFADSLSEDLWLRALDLQQCGLTNEGAKALLEALETNTTLVVLDIRKNPLIDHSMMKAVIKKVLQNGRSAKSEYQWITSPSVKEPSKTAKQKRRTIILGSGHKGKATIRIGLATKKPVSSGRKHSLGKEYYAPAPLPPGVSGFLPWRTAERAK 399 The following BLAST results are available for this feature:
BLAST of TCONS_00009973 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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