TCONS_00009972 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009972
Unique NameTCONS_00009972
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length366

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009972 ID=TCONS_00009972|Name=TCONS_00009972|organism=Clytia hemisphaerica|type=transcript|length=366bp
GGGAGCAGTGAAGAAGTATGCATATCCTAAATATGTTTGGTCACCCGCTG
GTGGTTGGTGGTGTCAACCAAGAAATTGGAAAAGAAATACTGCTTTTGCT
TTCATTGCTACTGCTGTTATTTGTGTACCCGTTGTATGGTTTGATCTTAA
AAGAGAGaaaCGTTATTCGTCACCCCCTGTTCCCGTACGTTCACAAAGAT
GGGCTGAATGGGTGCAAGGAAAACAATGATCTAAAAACAGgttttttagg
TTTGATGATGAAACGTTCAGCAAGCGTGGTGTAATATAGTGCTTTATAAA
TGtaggaattttttaaatttcattatttttcaaaataagagaAACATGCT
AGTTCAAAAATACATA
Run BLAST on NCBI

transcript from alignment at sc0000101:64061..65557+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009972 ID=TCONS_00009972|Name=TCONS_00009972|organism=Clytia hemisphaerica|type=transcript|length=1497bp|location=Sequence derived from alignment at sc0000101:64061..65557+ (Clytia hemisphaerica)
GGGAGCAGTGAAGAAGTATGCATATCCTAAATATGTTTGGTCACCCGCTG
GTGGTTGGTGGTGTCAACCAAGAAATTGGAAAAGAAATACTGCTTTTGCT
TTCATTGCTACTGCTGTTATTTGTGTACCCGTTGTATGGTTTGATCTTAA
AAGAGAGGTAAATTGTACCTTTAATTATTTGAGATTAGTTCAGAGTTCAA
ACTTCTTCCGTTGGATTTCTAAGTAAATAAGGAGGtatttttgtatcaaa
attcTGTATAAGTCACAATAACTTCAAGATTATCTCGTGTCATTATGTCA
TTATCTCAGACGGAAAAGTTAGTTGggtttttagctttttctgcCAATTA
TGACTTTTTCGTGTCTGAAGAAAGAGGtagattgttttttttatgatttg
aaagcgttcaaattttgatctttagGGAAGAAGGATTCAGGGTATTTGTA
GATCAAACCCCTAACAACAGAAACTAGCTCTCATATCACAAATAAAGTGA
taaaactaaaataaatttgatttgaaagtAGCTGTTCCATAGGTTAAGTA
AAGATCAActtaataactttattttttgtatatttttgaagCACTTTTTT
GTCCAGCCATTCCTGGCAAATGTCAACTCTTGAGGTTTATGAGTATATTC
TACCCTCACCTTTACTGCAACCTCATCAACAAACAGCATGGCTTGATGAG
GAAATATATTAAGGTTTCATGTCAATAGCAAAGTGAAGTTGATCGCAGta
gttttaagtttttcatagcttatttggctttttgttttttagaaaCGTTA
TTCGTCACCCCCTGTTCCCGTACGTTCACAAAGATGGGCTGAATGGGTGC
AAGGAAAACAATGATCTAAAAACAGGTATTATAAATTAATAGTTGtaaat
ttcatttgttttaaatttgttgttctacgggtgCAACTTGCTGCAaacga
aaaataataatattgaatttcctatGCCACAAATTTCTAATACTAAAAGT
TGTAAAGgtcatttgttttgatatttgttttgctTTCCATATTGTAACTG
ATGCTTCAAATATAACANAGgtcatttgttttgatatttgttttgctTTC
CATATTGTAACTGATGCTTCAAATATAACAActtctttaaaaagattatg
gGTAAAATACCAGGGATTTCTACCTCCTTTGGTTTAGGGGCATCAATAGA
ATTCTATCCCCATCGAAGAAAGGGTCAAATGTATGGTTGGATTTTAACAC
TTGTAATACTCCCAGAAATGTTATGAATCTGAACttttcagcattcgaaa
gatgaAACACTTTCTATCTACTAAACAATATGGAATACTTGGATTTCATA
ATTATCCatctttttttttaggttttttaggTTTGATGATGAAACGTTCA
GCAAGCGTGGTGTAATATAGTGCTTTATAAATGtaggaattttttaaatt
tcattatttttcaaaataagagaAACATGCTAGTTCAAAAATACATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005600XLOC_005600Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009972-exon-sc0000101-1491911889:64061..64217TCONS_00009972-exon-sc0000101-1491911889:64061..64217Clytia hemisphaericaexon
TCONS_00009972-exon-sc0000101-1510915933:64061..64217TCONS_00009972-exon-sc0000101-1510915933:64061..64217Clytia hemisphaericaexon
TCONS_00009972-exon-sc0000101-1575043694:64061..64217TCONS_00009972-exon-sc0000101-1575043694:64061..64217Clytia hemisphaericaexon
TCONS_00009972-exon-sc0000101-1491911889:64853..64935TCONS_00009972-exon-sc0000101-1491911889:64853..64935Clytia hemisphaericaexon
TCONS_00009972-exon-sc0000101-1510915933:64853..64935TCONS_00009972-exon-sc0000101-1510915933:64853..64935Clytia hemisphaericaexon
TCONS_00009972-exon-sc0000101-1575043694:64853..64935TCONS_00009972-exon-sc0000101-1575043694:64853..64935Clytia hemisphaericaexon
TCONS_00009972-exon-sc0000101-1491911889:65432..65557TCONS_00009972-exon-sc0000101-1491911889:65432..65557Clytia hemisphaericaexon
TCONS_00009972-exon-sc0000101-1510915933:65432..65557TCONS_00009972-exon-sc0000101-1510915933:65432..65557Clytia hemisphaericaexon
TCONS_00009972-exon-sc0000101-1575043694:65432..65557TCONS_00009972-exon-sc0000101-1575043694:65432..65557Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000101supercontigsc0000101:64061..65557 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
39.4199	38.4407	35.7066	52.4	44.3312	85.2458	127.83	143.879	162.272	147.401	115.591	117.81	84.8603	90.2212	11.192	16.815	68.0625	33.3644	25.1426	4.08225	34.3021	5.57712	22.5991	16.4367	104.316	95.9213	27.0263	40.3805	26.2518	26.7465
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009972 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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