TCONS_00009961 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009961
Unique NameTCONS_00009961
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length355

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009961 ID=TCONS_00009961|Name=TCONS_00009961|organism=Clytia hemisphaerica|type=transcript|length=355bp
CGAATTTAACAATACTTTAAACTTTCCTCTTGGATATTTTTCGGAAATCT
TACGAATTCGCTTTTCTTATGATGGTCcttaatttttaagaaattttgaa
aatgaagtaaATCTATATACATAATAGGCAGTATCGTAAAATTTATTATG
AccaatgttttattttgtcatctttttcagctttgtatttaAATTATTAA
GAATTATCTTATTAGTTTATTTTTATGCTAAAGCATCAAAttgatttttc
cattttttctcattttaaatTCCGGGCTGCTAGTACTGCAGACCTAcgcc
atttttttttcatttttgatcatGAAAAGACTTTTCGTTTCCCAAATTAC
ACTAA
Run BLAST on NCBI

transcript from alignment at sc0000100:508407..508761

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009961 ID=TCONS_00009961|Name=TCONS_00009961|organism=Clytia hemisphaerica|type=transcript|length=355bp|location=Sequence derived from alignment at sc0000100:508407..508761 (Clytia hemisphaerica)
TTAGTGTAATTTGGGAAACGAAAAGTCTTTTCatgatcaaaaatgaaaaa
aaaatggcgTAGGTCTGCAGTACTAGCAGCCCGGAatttaaaatgagaaa
aaatggaaaaatcaaTTTGATGCTTTAGCATAAAAATAAACTAATAAGAT
AATTCTTAATAATTtaaatacaaagctgaaaaagatgacaaaataaaaca
ttggTCATAATAAATTTTACGATACTGCCTATTATGTATATAGATttact
tcattttcaaaatttcttaaaaattaagGACCATCATAAGAAAAGCGAAT
TCGTAAGATTTCCGAAAAATATCCAAGAGGAAAGTTTAAAGTATTGTTAA
ATTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005591XLOC_005591Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009961-exon-sc0000100-1491911889:508407..508761TCONS_00009961-exon-sc0000100-1491911889:508407..508761Clytia hemisphaericaexon
TCONS_00009961-exon-sc0000100-1510915933:508407..508761TCONS_00009961-exon-sc0000100-1510915933:508407..508761Clytia hemisphaericaexon
TCONS_00009961-exon-sc0000100-1575043694:508407..508761TCONS_00009961-exon-sc0000100-1575043694:508407..508761Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000100supercontigsc0000100:508407..508761 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.58896	3.79138	1.65081	2.15341	4.26005	2.84845	1.24965	2.04734	1.22862	0.507281	0.492379	0.485506	1.29288	2.01401	0.551929	0.740381	0.729671	0.373945	0	0.270305	0.469889	0.687586	2.50755	2.78633	0.260896	0.931375	1.99919	2.13359	2.42738	2.74791
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009961 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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