TCONS_00009955 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009955
Unique NameTCONS_00009955
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length260

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009955 ID=TCONS_00009955|Name=TCONS_00009955|organism=Clytia hemisphaerica|type=transcript|length=260bp
TTTGACCAACAAGGATCAATGGATGTGATTGTAAAGTTATGGATAAAAAC
TAATTTAATACTAAATTTGTTGATGATATATATTTTGATACAAACCCACT
CTAGGACATTTCAGTTCATTCcaagacgaaaaaaaattataaaacccCCA
TTCCTCTACAATTATaaaaaactattcaaaaatttttcctcTACAAATAC
ACTTAAACATTTCAAATAGACAAGGATAAAAACCTtgcaaaatataaata
atactgaacg
Run BLAST on NCBI

transcript from alignment at sc0000100:354333..354592

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009955 ID=TCONS_00009955|Name=TCONS_00009955|organism=Clytia hemisphaerica|type=transcript|length=260bp|location=Sequence derived from alignment at sc0000100:354333..354592 (Clytia hemisphaerica)
cgttcagtattatttatattttgcaAGGTTTTTATCCTTGTCTATTTGAA
ATGTTTAAGTGTATTTGTAgaggaaaaatttttgaatagttttttATAAT
TGTAGAGGAATGGgggttttataattttttttcgtcttgGAATGAACTGA
AATGTCCTAGAGTGGGTTTGTATCAAAATATATATCATCAACAAATTTAG
TATTAAATTAGTTTTTATCCATAACTTTACAATCACATCCATTGATCCTT
GTTGGTCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005585XLOC_005585Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009955-exon-sc0000100-1491911889:354333..354592TCONS_00009955-exon-sc0000100-1491911889:354333..354592Clytia hemisphaericaexon
TCONS_00009955-exon-sc0000100-1510915933:354333..354592TCONS_00009955-exon-sc0000100-1510915933:354333..354592Clytia hemisphaericaexon
TCONS_00009955-exon-sc0000100-1575043694:354333..354592TCONS_00009955-exon-sc0000100-1575043694:354333..354592Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000100supercontigsc0000100:354333..354592 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.90833	1.28034	2.2299	1.45441	0.885301	0	0	0.790152	0.553204	1.37046	0	1.74885	0.87321	1.36026	1.11831	0	0.492818	0.505122	0.697854	0	1.26945	1.85757	1.50542	1.36864	0.704835	0.629048	2.7005	2.88204	2.18593	2.96949
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009955 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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