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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009950 ID=TCONS_00009950|Name=TCONS_00009950|organism=Clytia hemisphaerica|type=transcript|length=1271bp
GTTAGAATATGTTGAAAATCtgcaatttgaaaaatgaaaataaaattaaa
tcattattattttaaaaaggTTCTTTTTGTTACTAGATATTCGgaattaa
aaaacaacaactttgTTTTACTCAAAGACCaatacaaaaattcaaatgGT
ATGGTTTAAATTAAGAATACTAATTTTGTTGCTAATTGAGAAATATACTT
TATAATATAATTTATTTACAAAGATGTAAGAAATGATAATAAGCTAGGCT
TATCTGGTgttttctttgcttgtttttgttccATTGATAGCAGAGGTGAG
AAGGATTTTCCTCGATTCTTCTTTCTACTGTTATTCTTGGGACTTGATTC
TGGTGTTTTAGAAAATGAAGTGTTTGGGGTGCTAGAATTACTTTTACTTT
GTAAAGCTTGTAACATGTTCAGTTTAGGAGTTTGTACTGGTTTAGTCTTC
AGTTCCATTCTTGGTGTTAGGTTACAAATATCTCTTTTCTCAGGGCACAC
ACCTTTAACTTTATTCTTTAACAAGTGGCTGTTTTTAATAGTCGTAAATT
CACAATACAAACAAGTTATTCCAATTTTTCTATGTGTATTTTTATCTCtc
cttttctttcttcttaATTTCAGTCTCATTTTTGTAGCTTCAAATTGGTG
TCCACAGTTTAGACATAGCTCCTCCAAGTGCAAGttgtcatattttgatt
tacaaACTTGTTCATACTCAAACTGGTCAATAAAATGTTTATTATAATAT
CCAGATAAAGATGGAACATTATTGTGTACTTGTGCTTCCATTgattttaa
gtgatttttaGTGGCTGTATATAAttgtttattttccatttttcttaaTA
ATCAGTCTTgttaatttttaacaatttgtactatttgtaaaaaaaaaaag
aaagtcgCAAAATTGTCAGAATTTTATCCAATTCCATCCTTTGCTCAGTG
CAGCTGGAActtcgatattccaggattagaaaaagctttacctgttatca
tttttctttaaagaatcaacaagccatcaacatcgataaattccacacat
tttaaaattatctgccattatgactttcttgaagccatTCCGGCAAACCA
ATGGAGTTATGTtacggaattcctatgggagttcttttcctagtctgaat
tgcagacctctatagatatacttcctatataggtCTACTTAATAGTGTAC
GACGTGCCTTCCCGCTATGGTGGCTCTTATGTGGCCGATTTTACCTTTTT
GGCAAGTTACGGAAAGGGACA Run BLAST on NCBI protein sequence of TCONS_00009950-protein >TCONS_00009950-protein ID=TCONS_00009950-protein|Name=TCONS_00009950-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
MENKQLYTATKNHLKSMEAQVHNNVPSLSGYYNKHFIDQFEYEQVCKSKY
DNLHLEELCLNCGHQFEATKMRLKLRRKKRRDKNTHRKIGITCLYCEFTT
IKNSHLLKNKVKGVCPEKRDICNLTPRMELKTKPVQTPKLNMLQALQSKS
NSSTPNTSFSKTPESSPKNNSRKKNRGKSFSPLLSMEQKQAKKTPDKPSL
LSFLTSL Run BLAST on NCBI transcript from alignment at sc0000100:218089..219359 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009950 ID=TCONS_00009950|Name=TCONS_00009950|organism=Clytia hemisphaerica|type=transcript|length=1271bp|location=Sequence derived from alignment at sc0000100:218089..219359 (Clytia hemisphaerica)
TGTCCCTTTCCGTAACTTGCCAAAAAGGTAAAATCGGCCACATAAGAGCC
ACCATAGCGGGAAGGCACGTCGTACACTATTAAGTAGacctatataggaa
gtatatctatagaggtctgcaattcagactaggaaaagaactcccatagg
aattccgtaACATAACTCCATTGGTTTGCCGGAatggcttcaagaaagtc
ataatggcagataattttaaaatgtgtggaatttatcgatgttgatggct
tgttgattctttaaagaaaaatgataacaggtaaagctttttctaatcct
ggaatatcgaagTTCCAGCTGCACTGAGCAAAGGATGGAATTGGATAAAA
TTCTGACAATTTTGcgactttctttttttttttacaaatagtacaaattg
ttaaaaattaacAAGACTGATTAttaagaaaaatggaaaataaacaaTTA
TATACAGCCACtaaaaatcacttaaaatcAATGGAAGCACAAGTACACAA
TAATGTTCCATCTTTATCTGGATATTATAATAAACATTTTATTGACCAGT
TTGAGTATGAACAAGTttgtaaatcaaaatatgacaaCTTGCACTTGGAG
GAGCTATGTCTAAACTGTGGACACCAATTTGAAGCTACAAAAATGAGACT
GAAATtaagaagaaagaaaaggaGAGATAAAAATACACATAGAAAAATTG
GAATAACTTGTTTGTATTGTGAATTTACGACTATTAAAAACAGCCACTTG
TTAAAGAATAAAGTTAAAGGTGTGTGCCCTGAGAAAAGAGATATTTGTAA
CCTAACACCAAGAATGGAACTGAAGACTAAACCAGTACAAACTCCTAAAC
TGAACATGTTACAAGCTTTACAAAGTAAAAGTAATTCTAGCACCCCAAAC
ACTTCATTTTCTAAAACACCAGAATCAAGTCCCAAGAATAACAGTAGAAA
GAAGAATCGAGGAAAATCCTTCTCACCTCTGCTATCAATggaacaaaaac
aagcaaagaaaacACCAGATAAGCCTAGCTTATTATCATTTCTTACATCT
TTGTAAATAAATTATATTATAAAGTATATTTCTCAATTAGCAACAAAATT
AGTATTCTTAATTTAAACCATACcatttgaatttttgtattGGTCTTTGA
GTAAAAcaaagttgttgttttttaattcCGAATATCTAGTAACAAAAAGA
Acctttttaaaataataatgatttaattttattttcatttttcaaattgc
aGATTTTCAACATATTCTAAC Coding sequence (CDS) from alignment at sc0000100:218089..219359 >TCONS_00009950 ID=TCONS_00009950|Name=TCONS_00009950|organism=Clytia hemisphaerica|type=CDS|length=624bp|location=Sequence derived from alignment at sc0000100:218089..219359 (Clytia hemisphaerica)
atggaaaataaacaaTTATATACAGCCACtaaaaatcacttaaaatcAAT
GGAAGCACAAGTACACAATAATGTTCCATCTTTATCTGGATATTATAATA
AACATTTTATTGACCAGTTTGAGTATGAACAAGTttgtaaatcaaaatat
gacaaCTTGCACTTGGAGGAGCTATGTCTAAACTGTGGACACCAATTTGA
AGCTACAAAAATGAGACTGAAATtaagaagaaagaaaaggaGAGATAAAA
ATACACATAGAAAAATTGGAATAACTTGTTTGTATTGTGAATTTACGACT
ATTAAAAACAGCCACTTGTTAAAGAATAAAGTTAAAGGTGTGTGCCCTGA
GAAAAGAGATATTTGTAACCTAACACCAAGAATGGAACTGAAGACTAAAC
CAGTACAAACTCCTAAACTGAACATGTTACAAGCTTTACAAAGTAAAAGT
AATTCTAGCACCCCAAACACTTCATTTTCTAAAACACCAGAATCAAGTCC
CAAGAATAACAGTAGAAAGAAGAATCGAGGAAAATCCTTCTCACCTCTGC
TATCAATggaacaaaaacaagcaaagaaaacACCAGATAAGCCTAGCTTA
TTATCATTTCTTACATCTTTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009950-exon-sc0000100-1491911889:218089..219359 | TCONS_00009950-exon-sc0000100-1491911889:218089..219359 | Clytia hemisphaerica | exon |
| TCONS_00009950-exon-sc0000100-1510915933:218089..219359 | TCONS_00009950-exon-sc0000100-1510915933:218089..219359 | Clytia hemisphaerica | exon |
| TCONS_00009950-exon-sc0000100-1575043694:218089..219359 | TCONS_00009950-exon-sc0000100-1575043694:218089..219359 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000100 | supercontig | sc0000100:218089..219359 . |
Blast
The following BLAST results are available for this feature:
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