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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009897 ID=TCONS_00009897|Name=TCONS_00009897|organism=Clytia hemisphaerica|type=transcript|length=2864bpRun BLAST on NCBI protein sequence of TCONS_00009897-protein >TCONS_00009897-protein ID=TCONS_00009897-protein|Name=TCONS_00009897-protein|organism=Clytia hemisphaerica|type=polypeptide|length=653bp MLAAHKASVLKNFSKLAPSCTRAFHFTVNDKAGDTSSAELSRQYPVVDHTRun BLAST on NCBI transcript from alignment at sc0000100:96435..117123+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009897 ID=TCONS_00009897|Name=TCONS_00009897|organism=Clytia hemisphaerica|type=transcript|length=20689bp|location=Sequence derived from alignment at sc0000100:96435..117123+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000100:96435..117123+ >TCONS_00009897 ID=TCONS_00009897|Name=TCONS_00009897|organism=Clytia hemisphaerica|type=CDS|length=31392bp|location=Sequence derived from alignment at sc0000100:96435..117123+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009897 vs. Swiss-Prot (Human)
Match: SDHA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Homo sapiens GN=SDHA PE=1 SV=2) HSP 1 Score: 1001.12 bits (2587), Expect = 0.000e+0 Identity = 490/655 (74.81%), Postives = 563/655 (85.95%), Query Frame = 3
Query: 318 MLAAHKASVLKNFSKLAPSCTRAFHFTV--NDKAGDTSSAELSRQYPVVDHTYDCVVVXXXXXXXXXXXXXXXXXXKTACVTKLFPTRSHTVAAQGGINAALGNMEGDDWRWHMYDTVKGSDWLGDQNAIHYMTREAPAAVYELENYGMPFSRTEEGRIYQRAFGGQSLNFGKGGQAHRCCAVADRTGHSLLHTLYGQSLRHDCNYFIEYFAMDLLMDKGRCLGVLAMNLEDGSLHRIKAKNTVLATGGYGRAYFSCTSAHTCTGDGTAMVTRAGLANEDMEFVQFHPTGIYGAGCLITEGSRGEGGILINSEGERYMERYAPTAKDLASRDVVSRSSIMEIREGRGVGPEKDHVYLQLSHLPPEVLKARLPGISETAMIFAGVDVTRDPIPVLPTVHYNMGGVPTNHLGQVLDHKNGEDVLIEGLYAAGEAACASVHGANRLGANSLLDLVIFGRACALDIASKHSPGDKIPDLPANAGEESVANMDKLRFSNGRTPVANLRLKMQKAMQNYASVFRTGEIMKEGCEKIYELYDEMEDLKLYDRGMIWNSDLVEALELQNLMLNAAQTIVSAEAREESRGAHAREDFQDRIDEYDYSKPIEGQTMKPVEQHWRKHTLSYQDAVTGKVTLGYRPVIDETLDDNECESVPPAVRSY 2276
+L+A + ++ K + + + TR FHFTV N +A S +S QYPVVDH +D VVVGAGGAGLRAAFGL+ AGF TACVTKLFPTRSHTVAAQGGINAALGNME D+WRWH YDTVKGSDWLGDQ+AIHYMT +APAAV ELENYGMPFSRTE+G+IYQRAFGGQSL FGKGGQAHRCC VADRTGHSLLHTLYG+SLR+D +YF+EYFA+DLLM+ G C GV+A+ +EDGS+HRI+AKNTV+ATGGYGR YFSCTSAHT TGDGTAM+TRAGL +D+EFVQFHPTGIYGAGCLITEG RGEGGILINS+GER+MERYAP AKDLASRDVVSRS +EIREGRG GPEKDHVYLQL HLPPE L RLPGISETAMIFAGVDVT++PIPVLPTVHYNMGG+PTN+ GQVL H NG+D ++ GLYA GEAACASVHGANRLGANSLLDLV+FGRACAL I PGDK+P + NAGEESV N+DKLRF++G + LRL MQK+MQN+A+VFR G +++EGC KI +LY +++ LK +DRGM+WN+DLVE LELQNLML A QTI AEAR+ESRGAHARED++ RIDEYDYSKPI+GQ KP E+HWRKHTLSY D TGKVTL YRPVID+TL++ +C +VPPA+RSY
Sbjct: 10 LLSARRLALAKAWPTVLQTGTRGFHFTVDGNKRASAKVSDSISAQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWRWHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRTEDGKIYQRAFGGQSLKFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIEDGSIHRIRAKNTVVATGGYGRTYFSCTSAHTSTGDGTAMITRAGLPCQDLEFVQFHPTGIYGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGPEKDHVYLQLHHLPPEQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKGQVLRHVNGQDQIVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIEESCRPGDKVPPIKPNAGEESVMNLDKLRFADGSIRTSELRLSMQKSMQNHAAVFRVGSVLQEGCGKISKLYGDLKHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAREDYKVRIDEYDYSKPIQGQQKKPFEEHWRKHTLSYVDVGTGKVTLEYRPVIDKTLNEADCATVPPAIRSY 664 The following BLAST results are available for this feature:
BLAST of TCONS_00009897 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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