TCONS_00009897-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00009897-protein
Unique NameTCONS_00009897-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length653

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00009897-protein ID=TCONS_00009897-protein|Name=TCONS_00009897-protein|organism=Clytia hemisphaerica|type=polypeptide|length=653bp
MLAAHKASVLKNFSKLAPSCTRAFHFTVNDKAGDTSSAELSRQYPVVDHT
YDCVVVGAGGAGLRAAFGLANAGFKTACVTKLFPTRSHTVAAQGGINAAL
GNMEGDDWRWHMYDTVKGSDWLGDQNAIHYMTREAPAAVYELENYGMPFS
RTEEGRIYQRAFGGQSLNFGKGGQAHRCCAVADRTGHSLLHTLYGQSLRH
DCNYFIEYFAMDLLMDKGRCLGVLAMNLEDGSLHRIKAKNTVLATGGYGR
AYFSCTSAHTCTGDGTAMVTRAGLANEDMEFVQFHPTGIYGAGCLITEGS
RGEGGILINSEGERYMERYAPTAKDLASRDVVSRSSIMEIREGRGVGPEK
DHVYLQLSHLPPEVLKARLPGISETAMIFAGVDVTRDPIPVLPTVHYNMG
GVPTNHLGQVLDHKNGEDVLIEGLYAAGEAACASVHGANRLGANSLLDLV
IFGRACALDIASKHSPGDKIPDLPANAGEESVANMDKLRFSNGRTPVANL
RLKMQKAMQNYASVFRTGEIMKEGCEKIYELYDEMEDLKLYDRGMIWNSD
LVEALELQNLMLNAAQTIVSAEAREESRGAHAREDFQDRIDEYDYSKPIE
GQTMKPVEQHWRKHTLSYQDAVTGKVTLGYRPVIDETLDDNECESVPPAV
RSY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005549XLOC_005549Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00009897TCONS_00009897Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015939Fum_Rdtase/Succ_DH_flav-like_C
IPR023753FAD/NAD-binding_dom
IPR003953FAD-binding_2
IPR011281Succ_DH_flav_su_fwd
IPR014006Succ_Dhase_FrdA_Gneg
IPR003952FRD_SDH_FAD_BS
IPR027477Succ_DH/fumarate_Rdtase_cat
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO:0050660flavin adenine dinucleotide binding
GO:0016627oxidoreductase activity, acting on the CH-CH group of donors
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0006099tricarboxylic acid cycle
GO:0022900electron transport chain
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022900 electron transport chain
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006099 tricarboxylic acid cycle
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015939Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminalGENE3D1.20.58.100coord: 472..588
e-value: 1.2E-34
score: 118.6
IPR015939Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminalPFAMPF02910Succ_DH_flav_Ccoord: 501..653
e-value: 1.3E-40
score: 138.2
IPR015939Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminalSUPERFAMILY46977Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domaincoord: 492..653
IPR023753FAD/NAD(P)-binding domainGENE3D3.50.50.60coord: 346..471
e-value: 7.6E-19
score: 67.8
coord: 33..336
e-value: 2.5E-53
score: 181.2
IPR023753FAD/NAD(P)-binding domainSUPERFAMILY51905FAD/NAD(P)-binding domaincoord: 401..474
coord: 42..302
NoneNo IPR availablePIRSFPIRSF000171SDHA_APRA_LASPOcoord: 42..624
e-value: 7.6E-35
score: 118.0
NoneNo IPR availableGENE3D4.10.80.40coord: 589..653
e-value: 1.4E-21
score: 75.6
IPR003953FAD-dependent oxidoreductase 2, FAD binding domainPFAMPF00890FAD_binding_2coord: 52..446
e-value: 2.5E-123
score: 412.1
IPR011281Succinate dehydrogenase, flavoprotein subunitTIGRFAMTIGR01816TIGR01816coord: 49..653
e-value: 4.1E-297
score: 984.1
IPR014006Succinate dehydrogenase/fumarate reductase, flavoprotein subunitTIGRFAMTIGR01812TIGR01812coord: 52..622
e-value: 7.6E-225
score: 745.6
IPR003952Fumarate reductase/succinate dehydrogenase, FAD-binding sitePROSITEPS00504FRD_SDH_FAD_BINDINGcoord: 86..95
IPR027477Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domainSUPERFAMILY56425Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domaincoord: 279..397

Blast
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BLAST of TCONS_00009897-protein vs. Swiss-Prot (Human)
Match: SDHA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Homo sapiens GN=SDHA PE=1 SV=2)

HSP 1 Score: 1010.36 bits (2611), Expect = 0.000e+0
Identity = 490/655 (74.81%), Postives = 563/655 (85.95%), Query Frame = 0 
Query:    1 MLAAHKASVLKNFSKLAPSCTRAFHFTV--NDKAGDTSSAELSRQYPVVDHTYDCVVVGAGGAGLRAAFGLANAGFKTACVTKLFPTRSHTVAAQGGINAALGNMEGDDWRWHMYDTVKGSDWLGDQNAIHYMTREAPAAVYELENYGMPFSRTEEGRIYQRAFGGQSLNFGKGGQAHRCCAVADRTGHSLLHTLYGQSLRHDCNYFIEYFAMDLLMDKGRCLGVLAMNLEDGSLHRIKAKNTVLATGGYGRAYFSCTSAHTCTGDGTAMVTRAGLANEDMEFVQFHPTGIYGAGCLITEGSRGEGGILINSEGERYMERYAPTAKDLASRDVVSRSSIMEIREGRGVGPEKDHVYLQLSHLPPEVLKARLPGISETAMIFAGVDVTRDPIPVLPTVHYNMGGVPTNHLGQVLDHKNGEDVLIEGLYAAGEAACASVHGANRLGANSLLDLVIFGRACALDIASKHSPGDKIPDLPANAGEESVANMDKLRFSNGRTPVANLRLKMQKAMQNYASVFRTGEIMKEGCEKIYELYDEMEDLKLYDRGMIWNSDLVEALELQNLMLNAAQTIVSAEAREESRGAHAREDFQDRIDEYDYSKPIEGQTMKPVEQHWRKHTLSYQDAVTGKVTLGYRPVIDETLDDNECESVPPAVRSY 653
            +L+A + ++ K +  +  + TR FHFTV  N +A    S  +S QYPVVDH +D VVVGAGGAGLRAAFGL+ AGF TACVTKLFPTRSHTVAAQGGINAALGNME D+WRWH YDTVKGSDWLGDQ+AIHYMT +APAAV ELENYGMPFSRTE+G+IYQRAFGGQSL FGKGGQAHRCC VADRTGHSLLHTLYG+SLR+D +YF+EYFA+DLLM+ G C GV+A+ +EDGS+HRI+AKNTV+ATGGYGR YFSCTSAHT TGDGTAM+TRAGL  +D+EFVQFHPTGIYGAGCLITEG RGEGGILINS+GER+MERYAP AKDLASRDVVSRS  +EIREGRG GPEKDHVYLQL HLPPE L  RLPGISETAMIFAGVDVT++PIPVLPTVHYNMGG+PTN+ GQVL H NG+D ++ GLYA GEAACASVHGANRLGANSLLDLV+FGRACAL I     PGDK+P +  NAGEESV N+DKLRF++G    + LRL MQK+MQN+A+VFR G +++EGC KI +LY +++ LK +DRGM+WN+DLVE LELQNLML A QTI  AEAR+ESRGAHARED++ RIDEYDYSKPI+GQ  KP E+HWRKHTLSY D  TGKVTL YRPVID+TL++ +C +VPPA+RSY
Sbjct:   10 LLSARRLALAKAWPTVLQTGTRGFHFTVDGNKRASAKVSDSISAQYPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWRWHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRTEDGKIYQRAFGGQSLKFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIEDGSIHRIRAKNTVVATGGYGRTYFSCTSAHTSTGDGTAMITRAGLPCQDLEFVQFHPTGIYGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGPEKDHVYLQLHHLPPEQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKGQVLRHVNGQDQIVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIEESCRPGDKVPPIKPNAGEESVMNLDKLRFADGSIRTSELRLSMQKSMQNHAAVFRVGSVLQEGCGKISKLYGDLKHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRGAHAREDYKVRIDEYDYSKPIQGQQKKPFEEHWRKHTLSYVDVGTGKVTLEYRPVIDKTLNEADCATVPPAIRSY 664
The following BLAST results are available for this feature:
BLAST of TCONS_00009897-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SDHA0.000e+074.81Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
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