TCONS_00009896 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009896
Unique NameTCONS_00009896
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1917

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009896 ID=TCONS_00009896|Name=TCONS_00009896|organism=Clytia hemisphaerica|type=transcript|length=1917bp
ttttcaattaaaaattgtcaattacccccaagaaAAGCTCACGATCCTTT
CActaaaatgccattttatgcttgagacgtatgtactaaatgttaaatat
agtctgaattaggatcctaaccttaGAGTGCGgttagaatattttaggat
gattttcccaaaaaggttaaaaatatccacgatgaaatggatttacatca
ttcttacaataaaaaaaagcgtgtattgaaAATAGAGAACCTTGCAGTGA
AAATTTAAGTTTTGTATAAATGATTTAGAAATATTACGAAACATCAATTA
CATATTAAcataattttaacaaaattttggacctttccagaaaaaattaa
ataggaatggagaaatataatttttcattttgaaactgCCACAGCtacaa
tttttcatttatccaaTTGCTAAATCTTTTTGTCTCAAATAAATATATCT
TTGTATCATTAAAAACAATATTGATAATAAACATGGTTTCAAAATCTTTC
CACGCTCGATCGAGCCGATAATAATTGGTCAGcatcttgaaaatatttct
ccACATTAAAAATAGTTTCTTTAGTTTTCGAATCAAAAGAAACATTCCTA
TTCGATGAAGTAGAGATACATTTCAATTCAGTTGCTGGATCCACAACAAC
ACGTGGGTGGTTCTCTTTACCATCGACCTGTCCGGAATTAATCCCATGTG
CTGCTCGGACATCCTTCATTGTAATGGGGCGAAATCCTTTCATAATGGTA
TCATCATCTGAATATTTCAATGGCGAATAAAGCGTTGGTTGTGTAATCTG
TTTCTCATCACTTATCATTGAAGTAGAATCCACAAATTCATCTTTCTCCT
CTGCTCTCTTACTTGAAGACGACTCCAATAAATTCACTTTAGTTTCtagc
aaaattatttttgcaGATAACTCGTTATTCAATTTAACTGATGctgtaaa
tttcttttcaagcgAAGAAATACGATTTTCCATAACACTCATTTTCTTTG
TATTGTTTATACATTGAGTACAACTCTCAAGAGTGATCTCGTTCATGTTT
TTCACTTTAGCTTCACCATCAAGCTCATTAACAATGCTTTCCTCAACCAA
TCTAACTTCAGGTAAAGCATTTTTCAATACAGTGAATCGAGGTAAATTAT
TCCCACAAATGTCttcattgttatcaataaatAACCGACTTTCATCATCG
AttaatttttcaatattatcatCACCATTAATTTCACTTAAGTCAAGAAC
ATCTCTAACAGTGCTGATAGAATCATAGCCGGTGTTGACCAAGTTGTTAA
CCTCATCGTCGGAAATTTGATCAACGGTTGTAAGATCTAATACGTCATTT
GGAGTACATTTTCCTTGAATGGTAGGAtcttttataattttaattgGTAT
TTCACATTCATTTGGTTCAATGTGAAAATCAACTTTAGAGGTATTTTCTC
TCTGTGCAATACAGTCCAAAGATATTGATTGTTTCACTTGAACctgtttt
cgcggttttttcaaCTTCGCTAAAATAGCCATATTTTTTGTTCGACAAAG
TGATATTATTTTTGTCACAAATATAACCTTGATCTCAGCAAAGCCTACAG
CAAAGAATTGTTGTTTTGTTAACATTGGCTTCAAATTAAATTCTGTTACC
AGTATCTTAAACACTATTTCGATAAATCGTAAATCGCTTTTACAAAAGAA
GTCATATCCTTTTGCACCTAAATAAGAGGTGAATTCACATGAATAATCAC
CAAAGACATAATGCAATATTGGTAATAAAGGTTCAGTTAATCCAACATTG
ATTTGTTGCCATGGTATTTCCTCTTTATACTTTATCAAGCGTAACTCTGT
CTTAAGTTTTCGTAAATTGTTTTTCACATCTCCAGTTGTCATGTCACTTA
TTACAATTCTTTGTCCt
Run BLAST on NCBI

transcript from alignment at sc0000100:81847..84985+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009896 ID=TCONS_00009896|Name=TCONS_00009896|organism=Clytia hemisphaerica|type=transcript|length=3139bp|location=Sequence derived from alignment at sc0000100:81847..84985+ (Clytia hemisphaerica)
ttttcaattaaaaattgtcaattacccccaagaaAAGCTCACGATCCTTT
CActaaaatgccattttatgcttgagacgtatgtactaaatgttaaatat
agtctgaattaggatcctaaccttaGAGTGCGgttagaatattttaggat
gattttcccaaaaaggttaaaaatatccacgatgaaatggatttacatca
ttcttacaataaaaaaaagcgtgtattgaaAATAGAGAACCTTGCAGTGA
AAATTTAAGTTTTGTATAAATGATTTAGAAATATTACGAAACATCAATTA
Catataatacgcttaaatcggaactctcccattctcgcatgaggcttttt
cgctagcgatttttaaatacacggcattttttttcgcgcctttttgaTTG
TATATTCAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAaaagaaattatgacaaatt
tatacaatttaataaggagaagaaaaatcaaaattcaactaaaaatactt
tcaccatattttttaatgtgCATTAATTTTAGTGTCTGTCCCCTTAacaa
ttttaaacatcaattatCAAATACGAAAAAGGCCtatatttaagaacatt
tcttctcgcaaaataagtacatttgtatacgaatccctacaagtttctga
aaaatagaaaagcgagcgtattaaaaggagtaagaagtcgtctcggacga
cgccgggacggctagtcAATTACATATTAAcataattttaacaaaatttt
ggacctttccagaaaaaattaaataggaatggagaaatataatttttcat
tttgaaactgCCACAGCtacaatttttcatttatccaaTTGCTAAATCTT
TTTGTCTCAAATAAATATATCTTTGTATCATTAAAAACAATATTGATAAT
AAACATGGTTTCAAAATCTTTCCACGCTCGATCGAGCCGATAATAATTGG
TCAGcatcttgaaaatatttctccACATTAAAAATAGTTTCTTTAGTTTT
CGAATCAAAAGAAACATTCCTATTCGATGAAGTAGAGATACATTTCAATT
CAGTTGCTGGATCCACAACAACACGTGGGTGGTTCTCTTTACCATCGACC
TGTCCGGAATTAATCCCATGTGCTGCTCGGACATCCTTCATTGTAATGGG
GCGAAATCCTTTCATAATGGTATCATCATCTGAATATTTCAATGGCGAAT
AAAGCGTTGGTTGTGTAATCTGTTTCTCATCACTTATCATTGAAGTAGAA
TCCACAAATTCATCTTTCTCCTCTGCTCTCTTACTTGAAGACGACTCCAA
TAAATTCACTTTAGTTTCtagcaaaattatttttgcaGATAACTCGTTAT
TCAATTTAACTGATGctgtaaatttcttttcaagcgAAGAAATACGATTT
TCCATAACACTCATTTTCTTTGTATTGTTTATACATTGAGTACAACTCTC
AAGAGTGATCTCGTTCATGTTTTTCACTTTAGCTTCACCATCAAGCTCAT
TAACAATGCTTTCCTCAACCAATCTAACTTCAGGTAAAGCATTTTTCAAT
ACAGTGAATCGAGGTAAATTATTCCCACAAATGTCttcattgttatcaat
aaatAACCGACTTTCATCATCGAttaatttttcaatattatcatCACCAT
TAATTTCACTTAAGTCAAGAACATCTCTAACAGTGCTGATAGAATCATAG
CCGGTGTTGACCAAGTTGTTAACCTCATCGTCGGAAATTTGATCAACGGT
TGTAAGATCTAATACGTCATTTGGAGTACATTTTCCTTGAATGGTAGGAt
cttttataattttaattgGTATTTCACATTCATTTGGTTCAATGTGAAAA
TCAACTTTAGAGGTATTTTCTCTCTGTGCAATACAGTCCAAAGATATTGA
TTGTTTCACTTGAACctgttttcgcggttttttcaaCTTCGCTAAAATAG
CCATATTTTTTGTTCGACAAAGTGATATTATTTTTGTCACAAATATAACC
TTGATCTCAGCAAAGCCTACAGCAAAGAATTGTTGTTTTGTTAACATTGG
CTTCAAATTAAATTCTGTTACCAGTATCTTAAACACTATTTCGATAAATC
GTAAATCGCTTTTACAAAAGAAGTCATATCCTTTTGCACCTAAATAAGAG
GTGAATTCACATGAATAATCACCAAAGACATAATGCAATATTGGTAATAA
AGGTTCAGTTAATCCAACATTGATTTGTTGCCATGGTATTTCCTCTTTAT
ACTTTATCAAGCGTAACTCTGTCTTAAGTTTTCGTAAATTGTTTTTCACA
TCTCCAGTTGTCATGTCACTTATTACAATTCTTTGTCCt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005548XLOC_005548Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009896-exon-sc0000100-1491911889:81847..82147TCONS_00009896-exon-sc0000100-1491911889:81847..82147Clytia hemisphaericaexon
TCONS_00009896-exon-sc0000100-1510915933:81847..82147TCONS_00009896-exon-sc0000100-1510915933:81847..82147Clytia hemisphaericaexon
TCONS_00009896-exon-sc0000100-1575043694:81847..82147TCONS_00009896-exon-sc0000100-1575043694:81847..82147Clytia hemisphaericaexon
TCONS_00009896-exon-sc0000100-1491911889:83370..84985TCONS_00009896-exon-sc0000100-1491911889:83370..84985Clytia hemisphaericaexon
TCONS_00009896-exon-sc0000100-1510915933:83370..84985TCONS_00009896-exon-sc0000100-1510915933:83370..84985Clytia hemisphaericaexon
TCONS_00009896-exon-sc0000100-1575043694:83370..84985TCONS_00009896-exon-sc0000100-1575043694:83370..84985Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000100supercontigsc0000100:81847..84985 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
34.8754	30.7362	12.8601	9.01911	11.8322	7.79517	8.01548	8.0538	4.48366	4.72651	4.69288	2.09107	2.30702	2.02498	2.23176	3.54412	3.80472	3.5675	2.45749	1.90026	3.04098	2.76242	30.3798	24.7703	3.39153	4.92162	4.83299	4.20293	16.9556	18.3391
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029157CEP44_CC
Blast
[Close]
BLAST of TCONS_00009896 vs. Swiss-Prot (Human)
Match: CEP44 (Centrosomal protein of 44 kDa OS=Homo sapiens GN=CEP44 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.392e-21
Identity = 98/340 (28.82%), Postives = 156/340 (45.88%), Query Frame = -2 
Query:  894 MTTGDVKNNLRKLKTELRLIKYKEEIPWQQINVGLTEPLLPILHYVFGDYSCEFTSYLGAKGYDFFCKSDLRFIEIVFKILVTEFNLKPMLTKQQFFAVGFAEIKVIFVTKIISLCRTKNMAILAKLKKPRKQVQVKQSISLDCIAQRENTSKVDFHIEPNECEIPIKIIKDPTIQGKCTPNDVLDLTTVDQISDDEVNNLVNTGYDSISTVRDVLDLSEINGDDNIEKLIDDESRLFIDNNEDICGNNLPRFTVLKNALPEVRLVEESIVNELDGEAKVKNMN-EIT-LESC-TQCINNTKKMSVMENRISSLEKKFTASVKLN----NELSAKIILLE 1892
            M TGD+K +LR L+  LRL+ Y EE+    +  G     LPI+ Y F  YS   T  +     +   K+DLRFI+ V+K+L  +FN KP+LTK+QF   GFAE K+  V  I++ C  K    L+ L+K   Q             QR+  S                        GK  P    +  + + +  D     + +G      +R + +      +DN++ + +D      D NE +  ++L   T +K  +PEV+      V E+  E +  N+N EIT L++   +C  N KK++ +E R+  LE+K    V ++      L +++ LLE
Sbjct:    1 MATGDLKRSLRNLEQVLRLLNYPEEVDCVGLIKGDPAASLPIISYSFTSYSPYVTELIMESNVELIAKNDLRFIDAVYKLLRDQFNYKPILTKKQFIQCGFAEWKIQIVCDILN-CVMKKHKELSSLQKIPSQ-------------QRKKIS-----------------------SGKSEPPLGNEKISAEAVGVDISGRFMTSGKKKAVVIRHLYN------EDNVD-ISEDTLSPITDVNEAVDVSDL-NATEIK--MPEVK------VPEIKAEQQDVNVNPEITALQTMLAECQENLKKLTSIEKRLDCLEQKMKGKVMVDENTWTNLLSRVTLLE 287
The following BLAST results are available for this feature:
BLAST of TCONS_00009896 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CEP441.392e-2128.82Centrosomal protein of 44 kDa OS=Homo sapiens GN=C... [more]
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