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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009880 ID=TCONS_00009880|Name=TCONS_00009880|organism=Clytia hemisphaerica|type=transcript|length=2631bp
aaaacattcaaaaattctaaaaaaaatcgaaGCTGCGCTAAGAGTCTATC
TACAAATACGGGTCGATTTCAAATTAGTGATAAATCGGTTGAACTCAAAC
TTTTACGCTAAGTAGAAATCAGTCATATTTATGCAGGTCTTTACTACAGC
CTGGTTGTACTTCAAAAGTGACAAAGCAAAATAATAATCGAATTCCCATG
CTATTTTGTATCGTCTTGAGTACAAATTCAAAGTTTCAGATTTTTAGAAC
ATATTAAATACTGACTTTGACATTGAAGTGTTCTGCACTTTCCTCTCAAA
GTGAATGCTGTTATATCAAATTCATCTGATAAAAGGCAAATATTTATTTA
CACACATCCAATATCGCAAACCATCTCCAATAAAAAAGTCACATTCTACT
TTCTTCCTCGTTCGGTTTAAGGACATTCTCACTATTCGATTGGAAAGTCT
TTTGTCGAATGTATGCCAAggtgttttttctttcttaaaaagaacaataa
aaagTTTCTTGCCATAACACGATAAAATGTAAATACTCGAATTCAACGAG
ATGGCAAGCCACATAATTGATGCTTGGAAATGTGGATCTTGACTTTTGAA
TCTTAGCAAAATAAACATGACTGCAAAAGACATATTTGACGCAAAAGACG
CATACAATAAAGACATTGATTCGTTGAAAATGTCTggcaaatttcttcct
ttgtaGGCTATAATAAATGTAGCCACTTGTAAAAATCCTGCAAATCCAAG
TTGAATTGTTTTTGGTAGCACATTCCTACAAAATAGATATATGATTTCGt
ataaaatttttcttcgaGATTGAACATTAACAGTTTGCGTTTCCATAGCA
ACAATGGTCAAAACAACTGAAGATATGGTCAAAATGAGGATCGTAAACCA
TTGCTGGAGAATCGTGTTTCGTTTGCTTTTTGTTGAcaatttttgcattg
aattgAAAGCAGTCATGTGATTTCATGAGAACTATTGCaatgaaaaacgt
gtataaattCCCGGCAACAATGGTTTCAAAGAAGCAGGTGAACTTTCTTG
GTTTCGTATGTGGTAATATCACTGAAACTGCATTGATCAAAATTGAGGTA
AACAAGTGAATTACAGTCAGTATAAAATCTGAGATTTTAACAATAGGTGT
TTTGTGATATATGATAAAGATGATCAATATTAACACACAGAATGCAAGGT
TAAAACCGGCTAATCCAAAAGCCGTGAAATAGATGGTGCTTTTGACAAGA
TATTCCTGACGGTATGGGTCAAAACATTTGTCATGTTTTATGTTGGAAAG
ATGATAACGAGgacatttttgacatttttcatcATTCCCTTTGTTCAGTT
TGACAAAATTTCGTTGACATTGTTTACAAGTGAAACCATATTCGAAATTC
CATTTCGTGAATTGTTTCAAACGTTTTCCTCTGCTTTGTTCCCAGCCTGA
AGAACATTGATATGATTCGCATGTAGTTTCAATAGAAGCATCTGTTAATG
CCGTGCCGATTGAATTTCTCAgatatttcaccaaaatttctgCGTCAAGG
AAACTCATTGTATTTCTATAGAAAATGTTACTCTTTCTTATCCAGACCTC
ACACATATTTTGAAAGGGAAATCTTAATGCTGAGTTTATTCGGGATCTTT
TCGCTCCTTCCTTGCCAAATCTCTCAAATatcttatcaaaaatagcaaat
gcTATTTCGACCACCGTTCTATTTTGTTCTGattgtttttgaaatagaga
tatttggtttttaaatttctcaTGGTTTTTGATGATTAATTGACGTATAT
TGGTTCGATAGCTTAAAATGTTAACATCATTTCCTCCATTGACTGGGGAA
AGAAGAATCTATCATGGATGCTGGTAAGTCATGCGTAAACCagataaaat
ttgaataaaaatttttattgacagTTTGCACAAACTTAATTTGATCATTT
GGGCTTCCAAAAAGCACCAAAACATTGTACGATAAATCTTGATGTAAAAT
GTCAATAGCCCTGGTAAAGTTGGTGGAATTGAAAATGTCAATAATATCTG
TAAAATAGCAAGTATCAGAAAAGTCTTGTTGGCTTATTGTGTCAATGAAC
CTTTGGTGCATTTTAGAGTAATATTCACTGGAATCTCTTTCTAATCCTTT
TAAAAGTAATAACCCGAAAATAGAAACCTCGTATTTTACAGTTTTGGTTT
AAATTTAGCACATATGAATATCGCCTTGCTGTTATCAACTTTGAAAATAA
TCCAGTCATTTCTTTATCCATGTAAATTATGAAGAACCAGATCGTACTTT
TATTTTCCATTCGATGTTTTGATGCATTAAATGGTTTATTCACTTTATGA
TCCAATCCCGGGTCCAATACAAAGGATGTTGTTAAACGAAGCAGCATTTC
ACGATCTTGACAAACATCCAGACTTAGATATTCAAAGTCCTTCAATGTTG
AATAACGTTCTTTGGCAAGATTGAATGTTTCGGTAATGACATTATGATAA
AGAACAGCTCTCTTTTGAAAATCTGTCTTGTTCAAATTTCTATCACATTT
TGAAAAGATACCAACGATTTGTTCTGAGTTGGTAAACGGTAGTGCAACAG
CTATAAGCAATATTTTCTCGATCATTCTAAC Run BLAST on NCBI protein sequence of TCONS_00009880-protein >TCONS_00009880-protein ID=TCONS_00009880-protein|Name=TCONS_00009880-protein|organism=Clytia hemisphaerica|type=polypeptide|length=259bp
MCEVWIRKSNIFYRNTMSFLDAEILVKYLRNSIGTALTDASIETTCESYQ
CSSGWEQSRGKRLKQFTKWNFEYGFTCKQCQRNFVKLNKGNDEKCQKCPR
YHLSNIKHDKCFDPYRQEYLVKSTIYFTAFGLAGFNLAFCVLILIIFIIY
HKTPIVKISDFILTVIHLFTSILINAVSVILPHTKPRKFTCFFETIVAGN
LYTFFIAIVLMKSHDCFQFNAKIVNKKQTKHDSPAMVYDPHFDHIFSCFD
HCCYGNANC Run BLAST on NCBI transcript from alignment at sc0000099:472110..474740 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009880 ID=TCONS_00009880|Name=TCONS_00009880|organism=Clytia hemisphaerica|type=transcript|length=2631bp|location=Sequence derived from alignment at sc0000099:472110..474740 (Clytia hemisphaerica)
GTTAGAATGATCGAGAAAATATTGCTTATAGCTGTTGCACTACCGTTTAC
CAACTCAGAACAAATCGTTGGTATCTTTTCAAAATGTGATAGAAATTTGA
ACAAGACAGATTTTCAAAAGAGAGCTGTTCTTTATCATAATGTCATTACC
GAAACATTCAATCTTGCCAAAGAACGTTATTCAACATTGAAGGACTTTGA
ATATCTAAGTCTGGATGTTTGTCAAGATCGTGAAATGCTGCTTCGTTTAA
CAACATCCTTTGTATTGGACCCGGGATTGGATCATAAAGTGAATAAACCA
TTTAATGCATCAAAACATCGAATGGAAAATAAAAGTACGATCTGGTTCTT
CATAATTTACATGGATAAAGAAATGACTGGATTATTTTCAAAGTTGATAA
CAGCAAGGCGATATTCATATGTGCTAAATTTAAACCAAAACTGTAAAATA
CGAGGTTTCTATTTTCGGGTTATTACTTTTAAAAGGATTAGAAAGAGATT
CCAGTGAATATTACTCTAAAATGCACCAAAGGTTCATTGACACAATAAGC
CAACAAGACTTTTCTGATACTTGCTATTTTACAGATATTATTGACATTTT
CAATTCCACCAACTTTACCAGGGCTATTGACATTTTACATCAAGATTTAT
CGTACAATGTTTTGGTGCTTTTTGGAAGCCCAAATGATCAAATTAAGTTT
GTGCAAActgtcaataaaaatttttattcaaattttatctGGTTTACGCA
TGACTTACCAGCATCCATGATAGATTCTTCTTTCCCCAGTCAATGGAGGA
AATGATGTTAACATTTTAAGCTATCGAACCAATATACGTCAATTAATCAT
CAAAAACCAtgagaaatttaaaaaccaaatatctctatttcaaaaacaat
CAGAACAAAATAGAACGGTGGTCGAAATAgcatttgctatttttgataag
atATTTGAGAGATTTGGCAAGGAAGGAGCGAAAAGATCCCGAATAAACTC
AGCATTAAGATTTCCCTTTCAAAATATGTGTGAGGTCTGGATAAGAAAGA
GTAACATTTTCTATAGAAATACAATGAGTTTCCTTGACGcagaaattttg
gtgaaatatcTGAGAAATTCAATCGGCACGGCATTAACAGATGCTTCTAT
TGAAACTACATGCGAATCATATCAATGTTCTTCAGGCTGGGAACAAAGCA
GAGGAAAACGTTTGAAACAATTCACGAAATGGAATTTCGAATATGGTTTC
ACTTGTAAACAATGTCAACGAAATTTTGTCAAACTGAACAAAGGGAATga
tgaaaaatgtcaaaaatgtcCTCGTTATCATCTTTCCAACATAAAACATG
ACAAATGTTTTGACCCATACCGTCAGGAATATCTTGTCAAAAGCACCATC
TATTTCACGGCTTTTGGATTAGCCGGTTTTAACCTTGCATTCTGTGTGTT
AATATTGATCATCTTTATCATATATCACAAAACACCTATTGTTAAAATCT
CAGATTTTATACTGACTGTAATTCACTTGTTTACCTCAATTTTGATCAAT
GCAGTTTCAGTGATATTACCACATACGAAACCAAGAAAGTTCACCTGCTT
CTTTGAAACCATTGTTGCCGGGaatttatacacgtttttcattGCAATAG
TTCTCATGAAATCACATGACTGCTTTcaattcaatgcaaaaattgTCAAC
AAAAAGCAAACGAAACACGATTCTCCAGCAATGGTTTACGATCCTCATTT
TGACCATATCTTCAGTTGTTTTGACCATTGTTGCTATGGAAACGCAAACT
GTTAATGTTCAATCtcgaagaaaaattttataCGAAATCATATATCTATT
TTGTAGGAATGTGCTACCAAAAACAATTCAACTTGGATTTGCAGGATTTT
TACAAGTGGCTACATTTATTATAGCCtacaaaggaagaaatttgccAGAC
ATTTTCAACGAATCAATGTCTTTATTGTATGCGTCTTTTGCGTCAAATAT
GTCTTTTGCAGTCATGTTTATTTTGCTAAGATTCAAAAGTCAAGATCCAC
ATTTCCAAGCATCAATTATGTGGCTTGCCATCTCGTTGAATTCGAGTATT
TACATTTTATCGTGTTATGGCAAGAAActttttattgttctttttaagaa
agaaaaaacaccTTGGCATACATTCGACAAAAGACTTTCCAATCGAATAG
TGAGAATGTCCTTAAACCGAACGAGGAAGAAAGTAGAATGTGACTTTTTT
ATTGGAGATGGTTTGCGATATTGGATGTGTGTAAATAAATATTTGCCTTT
TATCAGATGAATTTGATATAACAGCATTCACTTTGAGAGGAAAGTGCAGA
ACACTTCAATGTCAAAGTCAGTATTTAATATGTTCTAAAAATCTGAAACT
TTGAATTTGTACTCAAGACGATACAAAATAGCATGGGAATTCGATTATTA
TTTTGCTTTGTCACTTTTGAAGTACAACCAGGCTGTAGTAAAGACCTGCA
TAAATATGACTGATTTCTACTTAGCGTAAAAGTTTGAGTTCAACCGATTT
ATCACTAATTTGAAATCGACCCGTATTTGTAGATAGACTCTTAGCGCAGC
ttcgattttttttagaatttttgaatgtttt Coding sequence (CDS) from alignment at sc0000099:472110..474740 >TCONS_00009880 ID=TCONS_00009880|Name=TCONS_00009880|organism=Clytia hemisphaerica|type=CDS|length=780bp|location=Sequence derived from alignment at sc0000099:472110..474740 (Clytia hemisphaerica)
ATGTGTGAGGTCTGGATAAGAAAGAGTAACATTTTCTATAGAAATACAAT
GAGTTTCCTTGACGcagaaattttggtgaaatatcTGAGAAATTCAATCG
GCACGGCATTAACAGATGCTTCTATTGAAACTACATGCGAATCATATCAA
TGTTCTTCAGGCTGGGAACAAAGCAGAGGAAAACGTTTGAAACAATTCAC
GAAATGGAATTTCGAATATGGTTTCACTTGTAAACAATGTCAACGAAATT
TTGTCAAACTGAACAAAGGGAATgatgaaaaatgtcaaaaatgtcCTCGT
TATCATCTTTCCAACATAAAACATGACAAATGTTTTGACCCATACCGTCA
GGAATATCTTGTCAAAAGCACCATCTATTTCACGGCTTTTGGATTAGCCG
GTTTTAACCTTGCATTCTGTGTGTTAATATTGATCATCTTTATCATATAT
CACAAAACACCTATTGTTAAAATCTCAGATTTTATACTGACTGTAATTCA
CTTGTTTACCTCAATTTTGATCAATGCAGTTTCAGTGATATTACCACATA
CGAAACCAAGAAAGTTCACCTGCTTCTTTGAAACCATTGTTGCCGGGaat
ttatacacgtttttcattGCAATAGTTCTCATGAAATCACATGACTGCTT
TcaattcaatgcaaaaattgTCAACAAAAAGCAAACGAAACACGATTCTC
CAGCAATGGTTTACGATCCTCATTTTGACCATATCTTCAGTTGTTTTGAC
CATTGTTGCTATGGAAACGCAAACTGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009880-exon-sc0000099-1491911889:472110..474740 | TCONS_00009880-exon-sc0000099-1491911889:472110..474740 | Clytia hemisphaerica | exon |
| TCONS_00009880-exon-sc0000099-1510915933:472110..474740 | TCONS_00009880-exon-sc0000099-1510915933:472110..474740 | Clytia hemisphaerica | exon |
| TCONS_00009880-exon-sc0000099-1575043694:472110..474740 | TCONS_00009880-exon-sc0000099-1575043694:472110..474740 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000099 | supercontig | sc0000099:472110..474740 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017978 | GPCR_3_C |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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