TCONS_00009866 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009866
Unique NameTCONS_00009866
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length760

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009866 ID=TCONS_00009866|Name=TCONS_00009866|organism=Clytia hemisphaerica|type=transcript|length=760bp
GTAGATTCATTTTAATTGATTATATACAACATTTCTGTATTACTGGACAA
CCATATTGCCAGGGCTTTAACCGCATTATAACCTTATTTTCACCAGCTTA
TTACCTTGTTACGTTATTATCAACATTATATAACAATCATATTACAACAA
AGCAAGGATGGTTAAAACCAAAGCAAGTATGGCCTTACTACTGCAGTTAT
TGCCACTACTGGTATTATACATTACGTTTTCAACGGGACAGTTATTaaca
caacaatatcaatctACTTGCTCGCCAGATGACTTTTATCTGAAAAGGTA
TCCTAAACTTGGCTTTCATGCATTTGAACCTGTTACAAAGTACGGAAACA
ACATCACCCGTGAACAAGATTGCTTCAAGTATTGCCGTAAGCATAACTGT
ACTATCATATTTGTATGGTCACGAGCGACAGGCTTAAAATGCATACTTTA
CCATACTTTAAACGTTGATATTTTCACTGCAAGCGGGCGAATCACGGCTC
ACCAAAATCATATAGCTTTTTATGCCAGAACATCGTGTTCTCCTGTCCAC
CCTAACAAACAATTAGTGCCGGTGATATACGAAAAAGCGGCATCTTGTTC
TGATATCATTGAAGCCGGTGGTTCATACAGATCCGGTATTTACCAAGTCG
GCAATGCATACAGGCCCATTAATGACAGATATAAATTCATATTGTGCGAT
ATGGAGGAATCTGGCGGTGGTTGGACAGTCATACAAAACAACGAACCAAT
GGATGGACGA
Run BLAST on NCBI

transcript from alignment at sc0000099:129955..130714

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009866 ID=TCONS_00009866|Name=TCONS_00009866|organism=Clytia hemisphaerica|type=transcript|length=760bp|location=Sequence derived from alignment at sc0000099:129955..130714 (Clytia hemisphaerica)
TCGTCCATCCATTGGTTCGTTGTTTTGTATGACTGTCCAACCACCGCCAG
ATTCCTCCATATCGCACAATATGAATTTATATCTGTCATTAATGGGCCTG
TATGCATTGCCGACTTGGTAAATACCGGATCTGTATGAACCACCGGCTTC
AATGATATCAGAACAAGATGCCGCTTTTTCGTATATCACCGGCACTAATT
GTTTGTTAGGGTGGACAGGAGAACACGATGTTCTGGCATAAAAAGCTATA
TGATTTTGGTGAGCCGTGATTCGCCCGCTTGCAGTGAAAATATCAACGTT
TAAAGTATGGTAAAGTATGCATTTTAAGCCTGTCGCTCGTGACCATACAA
ATATGATAGTACAGTTATGCTTACGGCAATACTTGAAGCAATCTTGTTCA
CGGGTGATGTTGTTTCCGTACTTTGTAACAGGTTCAAATGCATGAAAGCC
AAGTTTAGGATACCTTTTCAGATAAAAGTCATCTGGCGAGCAAGTagatt
gatattgttgtgttAATAACTGTCCCGTTGAAAACGTAATGTATAATACC
AGTAGTGGCAATAACTGCAGTAGTAAGGCCATACTTGCTTTGGTTTTAAC
CATCCTTGCTTTGTTGTAATATGATTGTTATATAATGTTGATAATAACGT
AACAAGGTAATAAGCTGGTGAAAATAAGGTTATAATGCGGTTAAAGCCCT
GGCAATATGGTTGTCCAGTAATACAGAAATGTTGTATATAATCAATTAAA
ATGAATCTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005520XLOC_005520Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009866-exon-sc0000099-1491911889:129955..130714TCONS_00009866-exon-sc0000099-1491911889:129955..130714Clytia hemisphaericaexon
TCONS_00009866-exon-sc0000099-1510915933:129955..130714TCONS_00009866-exon-sc0000099-1510915933:129955..130714Clytia hemisphaericaexon
TCONS_00009866-exon-sc0000099-1575043694:129955..130714TCONS_00009866-exon-sc0000099-1575043694:129955..130714Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000099supercontigsc0000099:129955..130714 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0832916	0	0	0	0	0	0.072881	0.0454278	0	0	0	0	1.42533e-07	0	0	0.00412592	0.0168555	0	0	0	0	0	0.0168248	0	0.300257	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009866 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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