TCONS_00009856 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009856
Unique NameTCONS_00009856
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length832

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009856 ID=TCONS_00009856|Name=TCONS_00009856|organism=Clytia hemisphaerica|type=transcript|length=832bp
CGAGATGTAATGGTTATTGGGGCAAAAGTCAATAGGCTGAGGGCTTTTTG
ACTTTCGACAAAATCTTTTATCGTTTTCTTATTACTGAAAAGGGTTATTC
TCAAGAATTTTCTTGACTTTGGCCTAACTTTCACGCATAAACGATGATTT
ACAATAAACTTTTTGAATAGAAACTGATTTCTGATAAAGGGTTGACATCA
GCTGTGCGTTAGATTGAATCCTTGGATGTAGCTTGGATGCTTTTAATACG
TTCAAACGCATGTTTTTTGGAACATAGCGGCTCTCATTAAAACTTTAATT
TCAGCTATCAAacaacttgtaaaaaaaaatgtgttacGTACCAAAGCGAT
ACGTTTTATCTGGACTGATCCACTTTGCTACATTCTGTTTATACTCACTT
CGAGTTAATCTGAGTGTGGCCATAGTATCCATGGTCAACCAGACATATGC
AAATGCGAAAAAGACTTCTCTTATAGAATGTGGAACAGGGAATACCACAA
TAGCAATAACACAGgagGATGGCGAGTTCTTATGGGATCAGAACCGACAA
GGTCTAATCCTTGGAGCCTTTTTCTATGGTTACTTGATTACACAAGTTCC
TGGAGGGTGGTTGGCCAATCGTTATGGCGGTAAATGGGTGTATGCAGTTG
GCATGCTGTTTTGTAATATCATGACCGCCCTCACGCCTGTGGCGGCACGA
ACATCGTATATGTTTCTTATTGCAGCGCGTGTTATCGAAGGTCTAGGTCA
GGTAAGGAATCATcacattttgttttttcatatcAAATCAAATGATGTTT
TCTACAATTATTTTCAACAGTCTAGTTTAGAC
Run BLAST on NCBI

protein sequence of TCONS_00009856-protein

>TCONS_00009856-protein ID=TCONS_00009856-protein|Name=TCONS_00009856-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
MCYVPKRYVLSGLIHFATFCLYSLRVNLSVAIVSMVNQTYANAKKTSLIE
CGTGNTTIAITQEDGEFLWDQNRQGLILGAFFYGYLITQVPGGWLANRYG
GKWVYAVGMLFCNIMTALTPVAARTSYMFLIAARVIEGLGQVRNHHILFF
HIKSNDVFYNYFQQSSLD
Run BLAST on NCBI

transcript from alignment at sc0000099:423339..425365-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009856 ID=TCONS_00009856|Name=TCONS_00009856|organism=Clytia hemisphaerica|type=transcript|length=2027bp|location=Sequence derived from alignment at sc0000099:423339..425365- (Clytia hemisphaerica)
CGAGATGTAATGGTTATTGGGGCAAAAGTCAATAGGCTGAGGGCTTTTTG
ACTTTCGACAAAATCTTTTATCGTTTTCTTATTACTGAAAAGGGTTATTC
TCAAGAATTTTCTTGACTTTGGCCTAACTTTCACGCATAAACGATGATTT
ACAATAAACTTTTTGAATAGAAACTGATTTCTGATAAAGGGTTGACATCA
GCTGTGCGTTAGATTGAATCCTTGGATGTAGCTTGGATGCTTTTAATACG
TTCAAACGCATGTTTTTTGGAACATAGCGGCTCTCATTAAAACTTTAATT
TCAGCTATCAAACAACTTGTAAAAAAAAATGTGTTACGTACCAAAGCGAT
ACGTTTTATCTGGACTGATCCACTTTGCTACATTCTGTTTATACTCACTT
CGAGTTAATCTGAGTGTGGCCATAGTATCCATGGTCAACCAGACATATGC
AAATGCGAAAAAGACTTCTCTTATAGAATGTGGAACAGGGAATACCACAA
TAGCAATAACACAGGTTAGAGATGTACCAATGAATTTAAAGTACGAAGTG
CTAGAGAGGAAAAGCAACGCTTACCTCGTTTTCAAAATATTGATATGGTA
ATTAATTCCCAGGGGAGTTCATAAAAAGTTCACTCTATATTCATAAAAGT
TTGGCTTGAAGACTGAAGGAATTTAATCACCTTGGCAATTGTTTCAAAAC
GAGGCAGTCGTTGCACTCAAAATAATTTATGAGACCTATCAGCCTTTTTC
AAGCAAGAAAAGAGTAAAGCCTCGAGATTCATGCCGCTTTTGAATGACGG
ATGAAATCTGCTAGCACTTTCTTTCTTCTTAATTGACTTTATTTTCGAAA
ACTGGTAATATGTTATATTCAATCTGGTATTTGTGAAAAGCCACGCGGTG
CACGCGTATTTAGTTGGGAAATAAGTAGCTTCATATTCCATCCAACAGCT
TCAATTCTTACCCCTTCGGGGTTATAAATTTCAACTTTCTAAACTTTTGT
CAAGTCGTATTTGATAGATAAGCAAGGAAATATTAGATTTTAGCAATTTC
GGAATCCTCAAAGAGACTATTATTGATTTTGATGGTTTTCAAGGATATGG
AAAAGAAACCCCTTTGGTTCGTTCCATATACCGCATCCATTTTGCTTAAA
AAAGGCCCATTTCCAGTGAGCCCGGACCCAATTTCAACTGACAGAATTCT
ATCTTCATTTTTCAGGAGGATGGCGAGTTCTTATGGGATCAGAACCGACA
AGGTGAGATTTTTAGATCTTAAAAAATCATTTTTCGACATAAAAATTCAT
TCATAGTTATCCTCTTACAGAGGATTATTTTTAGTGATGAAATTTTTAAC
GAGAAAAAATGAATCCGCCTGAAGGGGAGAGGAATTTTTGCAGAAAGAAA
TTTTAGTGAATTTGACGAGTTTACTTACAGTAAAAAATTGTCCGAATTCG
CCAAAATTTCTTCCCGCCAAAATTGAAATCTAGGGTATTCGCCAAAATCA
ATTCTCGCCAAATTTAGAAATTTTCTTAAACAGCCAAAGTAAATTCCGCT
AAAGTGCACCGAAATTGGCGAATGAGCCCATTCGCCAAAATTCTTCTTGT
CAAGATTATTTCTCTTCGTGTTTACAGGAGAAAAAAAATGAATTTTAGAT
TATTGAGAAAATCAGCGTGGTTCTAACTAAACTAAATCTGTTTAAAATAG
TTATTGCTATTGTTTTGATTATATTGTTATATCTTGTTTATCTTAGGTCT
AATCCTTGGAGCCTTTTTCTATGGTTACTTGATTACACAAGTTCCTGGAG
GGTGGTTGGCCAATCGTTATGGCGGTAAATGGGTGTATGCAGTTGGCATG
CTGTTTTGTAATATCATGACCGCCCTCACGCCTGTGGCGGCACGAACATC
GTATATGTTTCTTATTGCAGCGCGTGTTATCGAAGGTCTAGGTCAGGTAA
GGAATCATCACATTTTGTTTTTTCATATCAAATCAAATGATGTTTTCTAC
AATTATTTTCAACAGTCTAGTTTAGAC

Coding sequence (CDS) from alignment at sc0000099:423339..425365-

>TCONS_00009856 ID=TCONS_00009856|Name=TCONS_00009856|organism=Clytia hemisphaerica|type=CDS|length=1512bp|location=Sequence derived from alignment at sc0000099:423339..425365- (Clytia hemisphaerica)
GTCTAATCCTTGGAGCCTTTTTCTATGGTTACTTGATTACACAAGTTCCT
GGAGGGTGGTTGGCCAATCGTTATGGCGGTAAATGGGTGTATGCAGTTGG
CATGCTGTTTTGTAATATCATGACCGCCCTCACGCCTGTGGCGGCACGAA
CATCGTATATGTTTCTTATTGCAGCGCGTGTTATCGAAGGTCTAGGTCAG
GTAAGGAATCATCACATTTTGTTTTTTCATATCAAATCAAATGATGTTTT
CTACAATTATTTTCAACAGTCTAGTTTAGACGAGGATGGCGAGTTCTTAT
GGGATCAGAACCGACAAGATGTGTTACGTACCAAAGCGATACGTTTTATC
TGGACTGATCCACTTTGCTACATTCTGTTTATACTCACTTCGAGTTAATC
TGAGTGTGGCCATAGTATCCATGGTCAACCAGACATATGCAAATGCGAAA
AAGACTTCTCTTATAGAATGTGGAACAGGGAATACCACAATAGCAATAAC
ACAGGTCTAATCCTTGGAGCCTTTTTCTATGGTTACTTGATTACACAAGT
TCCTGGAGGGTGGTTGGCCAATCGTTATGGCGGTAAATGGGTGTATGCAG
TTGGCATGCTGTTTTGTAATATCATGACCGCCCTCACGCCTGTGGCGGCA
CGAACATCGTATATGTTTCTTATTGCAGCGCGTGTTATCGAAGGTCTAGG
TCAGGTAAGGAATCATCACATTTTGTTTTTTCATATCAAATCAAATGATG
TTTTCTACAATTATTTTCAACAGTCTAGTTTAGACGAGGATGGCGAGTTC
TTATGGGATCAGAACCGACAAGATGTGTTACGTACCAAAGCGATACGTTT
TATCTGGACTGATCCACTTTGCTACATTCTGTTTATACTCACTTCGAGTT
AATCTGAGTGTGGCCATAGTATCCATGGTCAACCAGACATATGCAAATGC
GAAAAAGACTTCTCTTATAGAATGTGGAACAGGGAATACCACAATAGCAA
TAACACAGGTCTAATCCTTGGAGCCTTTTTCTATGGTTACTTGATTACAC
AAGTTCCTGGAGGGTGGTTGGCCAATCGTTATGGCGGTAAATGGGTGTAT
GCAGTTGGCATGCTGTTTTGTAATATCATGACCGCCCTCACGCCTGTGGC
GGCACGAACATCGTATATGTTTCTTATTGCAGCGCGTGTTATCGAAGGTC
TAGGTCAGGTAAGGAATCATCACATTTTGTTTTTTCATATCAAATCAAAT
GATGTTTTCTACAATTATTTTCAACAGTCTAGTTTAGACGAGGATGGCGA
GTTCTTATGGGATCAGAACCGACAAGATGTGTTACGTACCAAAGCGATAC
GTTTTATCTGGACTGATCCACTTTGCTACATTCTGTTTATACTCACTTCG
AGTTAATCTGAGTGTGGCCATAGTATCCATGGTCAACCAGACATATGCAA
ATGCGAAAAAGACTTCTCTTATAGAATGTGGAACAGGGAATACCACAATA
GCAATAACACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005512XLOC_005512Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009856-proteinTCONS_00009856-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009856-exon-sc0000099-1575043694:424852..425365TCONS_00009856-exon-sc0000099-1575043694:424852..425365Clytia hemisphaericaexon
TCONS_00009856-exon-sc0000099-1575043694:424114..424150TCONS_00009856-exon-sc0000099-1575043694:424114..424150Clytia hemisphaericaexon
TCONS_00009856-exon-sc0000099-1575043694:423339..423619TCONS_00009856-exon-sc0000099-1575043694:423339..423619Clytia hemisphaericaexon
TCONS_00009856-exon-sc0000099-1510915933:424852..425365TCONS_00009856-exon-sc0000099-1510915933:424852..425365Clytia hemisphaericaexon
TCONS_00009856-exon-sc0000099-1510915933:424114..424150TCONS_00009856-exon-sc0000099-1510915933:424114..424150Clytia hemisphaericaexon
TCONS_00009856-exon-sc0000099-1510915933:423339..423619TCONS_00009856-exon-sc0000099-1510915933:423339..423619Clytia hemisphaericaexon
TCONS_00009856-exon-sc0000099-1491911889:424852..425365TCONS_00009856-exon-sc0000099-1491911889:424852..425365Clytia hemisphaericaexon
TCONS_00009856-exon-sc0000099-1491911889:424114..424150TCONS_00009856-exon-sc0000099-1491911889:424114..424150Clytia hemisphaericaexon
TCONS_00009856-exon-sc0000099-1491911889:423339..423619TCONS_00009856-exon-sc0000099-1491911889:423339..423619Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000099supercontigsc0000099:423339..425365 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.34168	0.111064	0.0644779	0.0630815	0.0767957	0	1.31785	1.02813	2.97524	1.48602	2.1347	1.06193	8.93812	7.74839	7.53433	8.3284	3.71922	3.98734	6.11409	3.80076	3.96426	4.18953	2.93822	4.3334	1.89537	1.30961	0.546596	0.416673	7.58476	7.27689
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027378Nucleotide_channel_N
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
Blast
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BLAST of TCONS_00009856 vs. Swiss-Prot (Human)
Match: S17A5 (Sialin OS=Homo sapiens GN=SLC17A5 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 8.844e-26
Identity = 57/137 (41.61%), Postives = 81/137 (59.12%), Query Frame = 2 
Query:  347 RYVLSGLIHFATFCLYSLRVNLSVAIVSMVNQTYANAKKTSLIECGTGNTTIAI--TQEDGEFLWDQNRQGLILGAFFYGYLITQVPGGWLANRYGGKWVYAVGMLFCNIMTALTPVAARTSYMFLIAARVIEGLGQ 751
            RY L+ L  F  F +Y+LRVNLSVA+V MV+         +   C   +  I +   Q   ++ WD   QG ILG+FFYGY+ITQ+PGG++A++ GGK +   G+L   ++T  TP+AA      LI  R +EGLG+
Sbjct:   39 RYNLAILAFFGFFIVYALRVNLSVALVDMVDSNTTLEDNRTSKACPEHSAPIKVHHNQTGKKYQWDAETQGWILGSFFYGYIITQIPGGYVASKIGGKMLLGFGILGTAVLTLFTPIAADLGVGPLIVLRALEGLGE 175
The following BLAST results are available for this feature:
BLAST of TCONS_00009856 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S17A58.844e-2641.61Sialin OS=Homo sapiens GN=SLC17A5 PE=1 SV=2[more]
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