TCONS_00009855 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009855
Unique NameTCONS_00009855
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1148

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009855 ID=TCONS_00009855|Name=TCONS_00009855|organism=Clytia hemisphaerica|type=transcript|length=1148bp
GgtgttttttgtgtgtttcaatgtaaaagattacgtcatgaatatcgaGA
ATAAGAAAAAGTTGAACTTTCTAATGATACCTTCTTCAATCCTTTTAGCG
ATTATCAGCTTCGTTtggctgttcttgtggattTTCCTGGTTCATGACTC
GCCAAGTCAACATCCTACAATTTCACAAGAGGAAAAGACAATGATAGAAA
CCAGTGTCAAGAAAGCTACTGATGCTGATAAGAACTTGGTGTACCCATGG
CGTGCTATTTTCTCATCGATTCATGTTTGGGCCATTATTATAACTCATAT
TTGCAAAAACTGGGTTTGGTACATGGTTTTAACTGGTTTACCGTCATact
tcaaaaatgttcttaatttcgacattaaaaagAATGGATTTTTATCAGCC
CTTCCATACATTGCTGGAATGATTTTCCAATTCGTTGGAGGATTTTTAGC
GGATTTTCTGCAAAACAACAAACTCTCCAAACAAACAACTAAAAGAATTA
TGACCGTCTTTGGATTTTATCCAACGGCTGTGTTATTACTATTGACCAGT
TATACGAAATGTGACGAAGTTTATTTATCTGTTACTTATATGGTCATTGC
TACAGGGTTGCTCTCCTTGAACAACTCTGGATACAACATCAACCACTTAG
ATTTGGCACCTCGTTACAGTGGCATTTTATACGGTATCGAAAACCTAGCC
GGAACAATCCCGGGAGGTGTGGCACCTGCCATCACAGGCTACTTAACAAA
TGATGACCCATCTCGTGAGAATTATCGTAAAGTGTTTGCGATCGCCGCCT
CGCTTGCCGCCTTTGGTGGAACGTTCTTCATTATCNGAAAACCTAGCCGG
AACAATCCCGGGAGGTGTGGCACCTGCCATCACAGGCTACTTAACAAATG
ATGACGTAAGCAAGTTACGAATCAAAATATGGTTCGCTCGAACTACGTAT
TGAGTTTTTGAAGTACNTTTCTGTTCCGGTGAAAAACAGAGTTGGAACGA
TCCGGAAAACCATGGGATGAGTCCGGAAGAGAAATTAAAGGAAGCCAATA
AGAAAGAGATGCACGGAATTACAAATGAAGTTTATGCTATGGATGCGACA
AATTTGTAAATCATCAATTGTAAAGTCTTCACAAATTCAATTTAAAGT
Run BLAST on NCBI

protein sequence of TCONS_00009855-protein

>TCONS_00009855-protein ID=TCONS_00009855-protein|Name=TCONS_00009855-protein|organism=Clytia hemisphaerica|type=polypeptide|length=299bp
VFFVCFNVKDYVMNIENKKKLNFLMIPSSILLAIISFVWLFLWIFLVHDS
PSQHPTISQEEKTMIETSVKKATDADKNLVYPWRAIFSSIHVWAIIITHI
CKNWVWYMVLTGLPSYFKNVLNFDIKKNGFLSALPYIAGMIFQFVGGFLA
DFLQNNKLSKQTTKRIMTVFGFYPTAVLLLLTSYTKCDEVYLSVTYMVIA
TGLLSLNNSGYNINHLDLAPRYSGILYGIENLAGTIPGGVAPAITGYLTN
DDPSRENYRKVFAIAASLAAFGGTFFIIXKPSRNNPGRCGTCHHRLLNK
Run BLAST on NCBI

transcript from alignment at sc0000099:405507..410000-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009855 ID=TCONS_00009855|Name=TCONS_00009855|organism=Clytia hemisphaerica|type=transcript|length=4494bp|location=Sequence derived from alignment at sc0000099:405507..410000- (Clytia hemisphaerica)
GGTGTTTTTTGTGTGTTTCAATGTAAAAGATTACGTCATGAATATCGAGA
ATAAGAAAAAGTTGAACTTTCTAATGATACCTTCTTCAATCCTTTTAGCG
ATTATCAGCTTCGTTTGGCTGTTCTTGTGGATTTTCCTGGTTCATGACTC
GCCAAGTCAACATCCTACAATTTCACAAGAGGAAAAGACAATGATAGAAA
CCAGTGTCAAGAAAGCTACTGATGCTGATAAGGTAAGTGGAAACCACACT
AAAGGAACAATTTAGAATTTAAGGGTTGGTTTCTAATTAAGAATCATTGA
TAATATAGAAACCAGCGTCAAGAGAGCAGGAGGACCCAGGGGTACTAGGT
TTGCAAGATGACGGTTATGTTCGAGCCAAAGTTCGAAAATCGACCCTCAG
AGAGACTGAATCTCAAAAATTTTGTCCATTTTTTGAGATACTATTTGCCT
AAAATTTCATCAAACGTTTTGCAAATCTTAGTCAAAGTTTCAAGAATATT
GTTGATTTTTAATTTTCGTGATCTTGGAACCCTTACAGGGACTCAATTGC
TTTTTAATGGTTTTTGTACCCCTTTGAGGGACTTTTTTGAGGGTGAGAAA
ATGGTACCCTTATGACTCGTACCCGGCACCATACTCCCTCCCCTCGGTGA
AAACAACAGACACGTATAAATTATTCAGCATTTGCTGATCAAATTTGAGT
TTTTCCCCTTTGACAAAGATCATAGCCCTTGATCTATCCCTCTAAACATG
CAACACTGAAAGCAAATAAAAACAACGTACTACAGTCCACTCTCTCTAAT
TCGAGCTTCAAGGGAGAAAAGGTTTTATTCGAATTAGAGAAAGATTCGAA
TGACAAAGAGTAACCACTTTCAAGGTTTTAGATTCTTCGCACTAAGTTTT
CTATAAAAGTGGTCCAGCAACCTGACTAAAGCTGAAGGAACCAATAATTT
AGTTCGAATTATAGAAAGATTCGAATAATAGAGATTCGAATTAGAGAGAG
TCGACTGCACTGTAGCACGGTCTTTCACCGATCTTTTATTCACAAGCTTC
AATGTCAAATATTTTAAAATGTACTCTATAAAAATCAGTAAGATTAAAAT
TGATCTGACTGTTAAAAAAATCAAAAAATTTTACATTCCGATGAAAGCTT
TTCACTATTTCAGAACTTGGTGTACCCATGGCGTGCTATTTTCTCATCGA
TTCATGTTTGGGCCATTATTATAACTCATATTTGCAAAAACTGGGTTTGG
TACATGGTTTTAACTGGTTTACCGTCATACTTCAAAAATGTTCTTAATTT
CGACATTAAAAAGGTGAGTGTTAAAATATGTCAACTATGAAAATTATTGA
TGAGAAACTTCTTAAAGACAACTTGTTGATTTAGTAGCTTGAATTTGGGA
CTGTATTTGATCAACCGAGAGTGTGCTCGACCATAGTCCGTATAAAAAAC
CCCGATCTGGAAGCCTTTTGTTTTTTTTTCATTGTTCCTACAAATTGAAC
TTGCGTTTGAGTTTGTTTTGCTCGCTTTTTGATCATGTGATTAAATCTCA
AACCAATCTCAAGAGGAGTACTTGGTAACATGATCAAAAACTGATCAAAT
CAATTTTTATCTTTTGATATTAACAAAGGAAAAAGCTAACAAAAAATTGA
AGCAATAAGCTTCCACACCAGAGTTTTTGTATGGATTATGGCTCTACAGA
CTGTACTGTGATTTTGAGAGTATCAACAAAATTCCCTTATTTCATAGAAT
GGATTTTTATCAGCCCTTCCATACATTGCTGGAATGATTTTCCAATTCGT
TGGAGGATTTTTAGCGGATTTTCTGCAAAACAACAAACTCTCCAAACAAA
CAACTAAAAGAATTATGACCGTCTTTGGTGAGTAGATTTTATTATTGGAT
CGTCTAATGACCAAATGACCAATCGAAACCAAGCTGGCACACAACGTTGT
TTCAATATTCATCCAACGTTGCATGGACATGAGATGAGCGTTGAAACTAT
GGTGTTTGACAGCTGGGAGTTAAACTTTTAATTTTAAAACTAAGGGCACA
ATAGACAAGCGTATAGATATGAAAAGGCCTTCAAAGGGGTTCCCAAGATT
ATTGCAATGCAACCCCCAAAGTCCGACTATTTTTTAATAGTAGTTGGAAA
TTGTGTCACGGGACAAAATAATCTTCTATTGATGATTAGCTTTATTCTTT
GAATCTTGCATTGCGCTCTTCTAGAACAAATTAGAATATGGGGGGGGGGT
GAGAAATATAACATTTTTTGGAAATTTACCCCCCGGATCTTGTGAATTTT
GACCCCCCGGACAACGGATTTCACCCCCGGACAACCATCAGTTGACCCCC
GAACATTCAAAATCACCCCTAATCAGAGCAAGTTTGCCCCTAAAACAAGG
CAAATTTCACAGATTCTTCACTACCACCCAGACAAAATATCCAATACTTC
CTCCACCCCCAATGTACAAATATTTCCTGAAAGGTAGCCCAGCGCAATCA
CCTTTTTCAAAATAAAAAACTTTCTAAGAACAAAAGGCTTCGATGATCAA
AATATCAAGAACAGATAAAGAACATTTTAAAGCTTTGTGGACTAAAAAAA
ACACAGTTTTTGCACACAGATTGCACGAAATTACTCTAATGGTGAAAATA
GGCTTTAAAAACTTTTGACGTTCTTATGAAAAAGCGCACACAGAGACTCT
TTCAGAGAACCAATGATTTCAAACAATATTGTTTTTCCATTCTTTAGGAT
TTTATCCAACGGCTGTGTTATTACTATTGACCAGTTATACGAAATGTGAC
GAAGTTTATTTATCTGTTACTTATATGGTCATTGCTACAGGTAGGATAAC
TTTTAAGGGGTACTCAAAGCAAGTGATTGACCTTTTTTAAGTACATAGCC
CTTAAAGGGTTTGTTTTTAAATATTGATATCGTTTGCTTACTAACCAATT
TTAATTTCAAGCTTTTTTCATATTGTATTGACACGTATGTGGAGCAAGAT
TGGTCAGATAAAGAGGAAAAGAAAAATATTTTTTCGCTTATATCAGCATA
ATATAACAAAAGGCAGGCACTTTCCTGATATGAAATACGTTTCTGAAACA
AGATCACTTATGTAAAAATAAAAGCTTAAGTGCACTGCATGTATTCTATG
GGTGTAAACAGCTAACTTTTGATAATCTTTGCGGACCTTCGGGGTGAGTT
TTTCAGGATTCCCAAAGTACACTGTGTAAGGGTGTGAAAAGTAAGAAAAA
CTAAAATTTTTGCATTCATTTTGAAGTTAAAATGCATGAAATATATTAAA
ACCGTTTTCAAATGTTCTTACTGATATTGCCAATTTATCTTTTGATAGGG
TTGCTCTCCTTGAACAACTCTGGATACAACATCAACCACTTAGATTTGGC
ACCTCGTTACAGTGGCATTTTATACGGTATCGAAAACCTAGCCGGAACAA
TCCCGGGAGGTGTGGCACCTGCCATCACAGGCTACTTAACAAATGATGAC
GTAAGCAAGTTACGAATCAAAATATGGTTCGCTCGAACTACGTATTGAGT
TTTTGAAGTACAAAGGTCTAAGAGAGGAAGGAATCTTCGTCCTTTCTCAA
GCAAGAAAAATGTGAAGCCTTAATGTTTGCGCCACCTTTGGAACGGTTTT
TTTTCACGCGGCAATTTTATCGAAATATGGCGATGGAAGTTACCTTCTGC
GAAAATCACACAGATTACGAGTTTTGGATAGTAAAATAAGAGGCTCCACT
TCCTATTCAAGAGTTTCCTCTCTAGCTCCTCCGGGCCTTTAAACTCAATT
GTTTGCGAACAGTACAAGCTTTAAAAAATGAGCTAATTTTGTTTCATATA
AACCAATCTTTAAATCGTTTTTATAATACCATAGCTTCTATAGAGCCAAC
AGTTAGAAAATTTCTGCATGCCTCTTTTAGAGAACCCTTTTTTAAAACAC
TGAACATTTTTTGGCAATGTTAGTAAGGCACCCGAATTTACCATCGTCCC
GTTGTGACCACATTGGCTAAACATGGTACTGATTTTCAGTGGCCTACTGA
GTTTGAAATAAGGCTGTTTTTCATTTTTTCATCGTGTTATTATCTAATTT
CAGCCATCTCGTGAGAATTATCGTAAAGTGTTTGCGATCGCCGCCTCGCT
TGCCGCCTTTGGTGGAACGTTCTTCATTATCNGAAAACCTAGCCGGAACA
ATCCCGGGAGGTGTGGCACCTGCCATCACAGGCTACTTAACAAATGATGA
CGTAAGCAAGTTACGAATCAAAATATGGTTCGCTCGAACTACGTATTGAG
TTTTTGAAGTACNTTTCTGTTCCGGTGAAAAACAGAGTTGGAACGATCCG
GAAAACCATGGGATGAGTCCGGAAGAGAAATTAAAGGAAGCCAATAAGAA
AGAGATGCACGGAATTACAAATGAAGTTTATGCTATGGATGCGACAAATT
TGTAAATCATCAATTGTAAAGTCTTCACAAATTCAATTTAAAGT

Coding sequence (CDS) from alignment at sc0000099:405507..410000-

>TCONS_00009855 ID=TCONS_00009855|Name=TCONS_00009855|organism=Clytia hemisphaerica|type=CDS|length=5400bp|location=Sequence derived from alignment at sc0000099:405507..410000- (Clytia hemisphaerica)
CCATCTCGTGAGAATTATCGTAAAGTGTTTGCGATCGCCGCCTCGCTTGC
CGCCTTTGGTGGAACGTTCTTCATTATCNGAAAACCTAGCCGGAACAATC
CCGGGAGGTGTGGCACCTGCCATCACAGGCTACTTAACAAATGAGGTTGC
TCTCCTTGAACAACTCTGGATACAACATCAACCACTTAGATTTGGCACCT
CGTTACAGTGGCATTTTATACGGTATCGAAAACCTAGCCGGAACAATCCC
GGGAGGTGTGGCACCTGCCATCACAGGCTACTTAACAAATGATGACGATT
TTATCCAACGGCTGTGTTATTACTATTGACCAGTTATACGAAATGTGACG
AAGTTTATTTATCTGTTACTTATATGGTCATTGCTACAGAATGGATTTTT
ATCAGCCCTTCCATACATTGCTGGAATGATTTTCCAATTCGTTGGAGGAT
TTTTAGCGGATTTTCTGCAAAACAACAAACTCTCCAAACAAACAACTAAA
AGAATTATGACCGTCTTTGAACTTGGTGTACCCATGGCGTGCTATTTTCT
CATCGATTCATGTTTGGGCCATTATTATAACTCATATTTGCAAAAACTGG
GTTTGGTACATGGTTTTAACTGGTTTACCGTCATACTTCAAAAATGTTCT
TAATTTCGACATTAAAAAGGTGTTTTTTGTGTGTTTCAATGTAAAAGATT
ACGTCATGAATATCGAGAATAAGAAAAAGTTGAACTTTCTAATGATACCT
TCTTCAATCCTTTTAGCGATTATCAGCTTCGTTTGGCTGTTCTTGTGGAT
TTTCCTGGTTCATGACTCGCCAAGTCAACATCCTACAATTTCACAAGAGG
AAAAGACAATGATAGAAACCAGTGTCAAGAAAGCTACTGATGCTGATAAG
CCATCTCGTGAGAATTATCGTAAAGTGTTTGCGATCGCCGCCTCGCTTGC
CGCCTTTGGTGGAACGTTCTTCATTATCNGAAAACCTAGCCGGAACAATC
CCGGGAGGTGTGGCACCTGCCATCACAGGCTACTTAACAAATGAGGTTGC
TCTCCTTGAACAACTCTGGATACAACATCAACCACTTAGATTTGGCACCT
CGTTACAGTGGCATTTTATACGGTATCGAAAACCTAGCCGGAACAATCCC
GGGAGGTGTGGCACCTGCCATCACAGGCTACTTAACAAATGATGACGATT
TTATCCAACGGCTGTGTTATTACTATTGACCAGTTATACGAAATGTGACG
AAGTTTATTTATCTGTTACTTATATGGTCATTGCTACAGAATGGATTTTT
ATCAGCCCTTCCATACATTGCTGGAATGATTTTCCAATTCGTTGGAGGAT
TTTTAGCGGATTTTCTGCAAAACAACAAACTCTCCAAACAAACAACTAAA
AGAATTATGACCGTCTTTGAACTTGGTGTACCCATGGCGTGCTATTTTCT
CATCGATTCATGTTTGGGCCATTATTATAACTCATATTTGCAAAAACTGG
GTTTGGTACATGGTTTTAACTGGTTTACCGTCATACTTCAAAAATGTTCT
TAATTTCGACATTAAAAAGGTGTTTTTTGTGTGTTTCAATGTAAAAGATT
ACGTCATGAATATCGAGAATAAGAAAAAGTTGAACTTTCTAATGATACCT
TCTTCAATCCTTTTAGCGATTATCAGCTTCGTTTGGCTGTTCTTGTGGAT
TTTCCTGGTTCATGACTCGCCAAGTCAACATCCTACAATTTCACAAGAGG
AAAAGACAATGATAGAAACCAGTGTCAAGAAAGCTACTGATGCTGATAAG
CCATCTCGTGAGAATTATCGTAAAGTGTTTGCGATCGCCGCCTCGCTTGC
CGCCTTTGGTGGAACGTTCTTCATTATCNGAAAACCTAGCCGGAACAATC
CCGGGAGGTGTGGCACCTGCCATCACAGGCTACTTAACAAATGAGGTTGC
TCTCCTTGAACAACTCTGGATACAACATCAACCACTTAGATTTGGCACCT
CGTTACAGTGGCATTTTATACGGTATCGAAAACCTAGCCGGAACAATCCC
GGGAGGTGTGGCACCTGCCATCACAGGCTACTTAACAAATGATGACGATT
TTATCCAACGGCTGTGTTATTACTATTGACCAGTTATACGAAATGTGACG
AAGTTTATTTATCTGTTACTTATATGGTCATTGCTACAGAATGGATTTTT
ATCAGCCCTTCCATACATTGCTGGAATGATTTTCCAATTCGTTGGAGGAT
TTTTAGCGGATTTTCTGCAAAACAACAAACTCTCCAAACAAACAACTAAA
AGAATTATGACCGTCTTTGAACTTGGTGTACCCATGGCGTGCTATTTTCT
CATCGATTCATGTTTGGGCCATTATTATAACTCATATTTGCAAAAACTGG
GTTTGGTACATGGTTTTAACTGGTTTACCGTCATACTTCAAAAATGTTCT
TAATTTCGACATTAAAAAGGTGTTTTTTGTGTGTTTCAATGTAAAAGATT
ACGTCATGAATATCGAGAATAAGAAAAAGTTGAACTTTCTAATGATACCT
TCTTCAATCCTTTTAGCGATTATCAGCTTCGTTTGGCTGTTCTTGTGGAT
TTTCCTGGTTCATGACTCGCCAAGTCAACATCCTACAATTTCACAAGAGG
AAAAGACAATGATAGAAACCAGTGTCAAGAAAGCTACTGATGCTGATAAG
CCATCTCGTGAGAATTATCGTAAAGTGTTTGCGATCGCCGCCTCGCTTGC
CGCCTTTGGTGGAACGTTCTTCATTATCNGAAAACCTAGCCGGAACAATC
CCGGGAGGTGTGGCACCTGCCATCACAGGCTACTTAACAAATGAGGTTGC
TCTCCTTGAACAACTCTGGATACAACATCAACCACTTAGATTTGGCACCT
CGTTACAGTGGCATTTTATACGGTATCGAAAACCTAGCCGGAACAATCCC
GGGAGGTGTGGCACCTGCCATCACAGGCTACTTAACAAATGATGACGATT
TTATCCAACGGCTGTGTTATTACTATTGACCAGTTATACGAAATGTGACG
AAGTTTATTTATCTGTTACTTATATGGTCATTGCTACAGAATGGATTTTT
ATCAGCCCTTCCATACATTGCTGGAATGATTTTCCAATTCGTTGGAGGAT
TTTTAGCGGATTTTCTGCAAAACAACAAACTCTCCAAACAAACAACTAAA
AGAATTATGACCGTCTTTGAACTTGGTGTACCCATGGCGTGCTATTTTCT
CATCGATTCATGTTTGGGCCATTATTATAACTCATATTTGCAAAAACTGG
GTTTGGTACATGGTTTTAACTGGTTTACCGTCATACTTCAAAAATGTTCT
TAATTTCGACATTAAAAAGGTGTTTTTTGTGTGTTTCAATGTAAAAGATT
ACGTCATGAATATCGAGAATAAGAAAAAGTTGAACTTTCTAATGATACCT
TCTTCAATCCTTTTAGCGATTATCAGCTTCGTTTGGCTGTTCTTGTGGAT
TTTCCTGGTTCATGACTCGCCAAGTCAACATCCTACAATTTCACAAGAGG
AAAAGACAATGATAGAAACCAGTGTCAAGAAAGCTACTGATGCTGATAAG
CCATCTCGTGAGAATTATCGTAAAGTGTTTGCGATCGCCGCCTCGCTTGC
CGCCTTTGGTGGAACGTTCTTCATTATCNGAAAACCTAGCCGGAACAATC
CCGGGAGGTGTGGCACCTGCCATCACAGGCTACTTAACAAATGAGGTTGC
TCTCCTTGAACAACTCTGGATACAACATCAACCACTTAGATTTGGCACCT
CGTTACAGTGGCATTTTATACGGTATCGAAAACCTAGCCGGAACAATCCC
GGGAGGTGTGGCACCTGCCATCACAGGCTACTTAACAAATGATGACGATT
TTATCCAACGGCTGTGTTATTACTATTGACCAGTTATACGAAATGTGACG
AAGTTTATTTATCTGTTACTTATATGGTCATTGCTACAGAATGGATTTTT
ATCAGCCCTTCCATACATTGCTGGAATGATTTTCCAATTCGTTGGAGGAT
TTTTAGCGGATTTTCTGCAAAACAACAAACTCTCCAAACAAACAACTAAA
AGAATTATGACCGTCTTTGAACTTGGTGTACCCATGGCGTGCTATTTTCT
CATCGATTCATGTTTGGGCCATTATTATAACTCATATTTGCAAAAACTGG
GTTTGGTACATGGTTTTAACTGGTTTACCGTCATACTTCAAAAATGTTCT
TAATTTCGACATTAAAAAGGTGTTTTTTGTGTGTTTCAATGTAAAAGATT
ACGTCATGAATATCGAGAATAAGAAAAAGTTGAACTTTCTAATGATACCT
TCTTCAATCCTTTTAGCGATTATCAGCTTCGTTTGGCTGTTCTTGTGGAT
TTTCCTGGTTCATGACTCGCCAAGTCAACATCCTACAATTTCACAAGAGG
AAAAGACAATGATAGAAACCAGTGTCAAGAAAGCTACTGATGCTGATAAG
CCATCTCGTGAGAATTATCGTAAAGTGTTTGCGATCGCCGCCTCGCTTGC
CGCCTTTGGTGGAACGTTCTTCATTATCNGAAAACCTAGCCGGAACAATC
CCGGGAGGTGTGGCACCTGCCATCACAGGCTACTTAACAAATGAGGTTGC
TCTCCTTGAACAACTCTGGATACAACATCAACCACTTAGATTTGGCACCT
CGTTACAGTGGCATTTTATACGGTATCGAAAACCTAGCCGGAACAATCCC
GGGAGGTGTGGCACCTGCCATCACAGGCTACTTAACAAATGATGACGATT
TTATCCAACGGCTGTGTTATTACTATTGACCAGTTATACGAAATGTGACG
AAGTTTATTTATCTGTTACTTATATGGTCATTGCTACAGAATGGATTTTT
ATCAGCCCTTCCATACATTGCTGGAATGATTTTCCAATTCGTTGGAGGAT
TTTTAGCGGATTTTCTGCAAAACAACAAACTCTCCAAACAAACAACTAAA
AGAATTATGACCGTCTTTGAACTTGGTGTACCCATGGCGTGCTATTTTCT
CATCGATTCATGTTTGGGCCATTATTATAACTCATATTTGCAAAAACTGG
GTTTGGTACATGGTTTTAACTGGTTTACCGTCATACTTCAAAAATGTTCT
TAATTTCGACATTAAAAAGGTGTTTTTTGTGTGTTTCAATGTAAAAGATT
ACGTCATGAATATCGAGAATAAGAAAAAGTTGAACTTTCTAATGATACCT
TCTTCAATCCTTTTAGCGATTATCAGCTTCGTTTGGCTGTTCTTGTGGAT
TTTCCTGGTTCATGACTCGCCAAGTCAACATCCTACAATTTCACAAGAGG
AAAAGACAATGATAGAAACCAGTGTCAAGAAAGCTACTGATGCTGATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005511XLOC_005511Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009855-proteinTCONS_00009855-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009855-exon-sc0000099-1575043694:409769..410000TCONS_00009855-exon-sc0000099-1575043694:409769..410000Clytia hemisphaericaexon
TCONS_00009855-exon-sc0000099-1575043694:408688..408837TCONS_00009855-exon-sc0000099-1575043694:408688..408837Clytia hemisphaericaexon
TCONS_00009855-exon-sc0000099-1575043694:408124..408253TCONS_00009855-exon-sc0000099-1575043694:408124..408253Clytia hemisphaericaexon
TCONS_00009855-exon-sc0000099-1575043694:407161..407253TCONS_00009855-exon-sc0000099-1575043694:407161..407253Clytia hemisphaericaexon
TCONS_00009855-exon-sc0000099-1575043694:406501..406652TCONS_00009855-exon-sc0000099-1575043694:406501..406652Clytia hemisphaericaexon
TCONS_00009855-exon-sc0000099-1575043694:405507..405897TCONS_00009855-exon-sc0000099-1575043694:405507..405897Clytia hemisphaericaexon
TCONS_00009855-exon-sc0000099-1510915933:409769..410000TCONS_00009855-exon-sc0000099-1510915933:409769..410000Clytia hemisphaericaexon
TCONS_00009855-exon-sc0000099-1510915933:408688..408837TCONS_00009855-exon-sc0000099-1510915933:408688..408837Clytia hemisphaericaexon
TCONS_00009855-exon-sc0000099-1510915933:408124..408253TCONS_00009855-exon-sc0000099-1510915933:408124..408253Clytia hemisphaericaexon
TCONS_00009855-exon-sc0000099-1510915933:407161..407253TCONS_00009855-exon-sc0000099-1510915933:407161..407253Clytia hemisphaericaexon
TCONS_00009855-exon-sc0000099-1510915933:406501..406652TCONS_00009855-exon-sc0000099-1510915933:406501..406652Clytia hemisphaericaexon
TCONS_00009855-exon-sc0000099-1510915933:405507..405897TCONS_00009855-exon-sc0000099-1510915933:405507..405897Clytia hemisphaericaexon
TCONS_00009855-exon-sc0000099-1491911889:409769..410000TCONS_00009855-exon-sc0000099-1491911889:409769..410000Clytia hemisphaericaexon
TCONS_00009855-exon-sc0000099-1491911889:408688..408837TCONS_00009855-exon-sc0000099-1491911889:408688..408837Clytia hemisphaericaexon
TCONS_00009855-exon-sc0000099-1491911889:408124..408253TCONS_00009855-exon-sc0000099-1491911889:408124..408253Clytia hemisphaericaexon
TCONS_00009855-exon-sc0000099-1491911889:407161..407253TCONS_00009855-exon-sc0000099-1491911889:407161..407253Clytia hemisphaericaexon
TCONS_00009855-exon-sc0000099-1491911889:406501..406652TCONS_00009855-exon-sc0000099-1491911889:406501..406652Clytia hemisphaericaexon
TCONS_00009855-exon-sc0000099-1491911889:405507..405897TCONS_00009855-exon-sc0000099-1491911889:405507..405897Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000099supercontigsc0000099:405507..410000 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.45339	0.612737	0.163958	0.160407	0	0.0402628	0.74469	1.17841	2.69239	1.64932	2.46248	1.35017	8.58858	7.28315	8.99364	11.4108	4.84615	4.50141	7.08093	4.3666	5.86303	7.97072	7.49239	7.56328	0.621892	0.869521	1.03615	1.67355	14.4735	11.1733
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
Blast
[Close]
BLAST of TCONS_00009855 vs. Swiss-Prot (Human)
Match: VGLU2 (Vesicular glutamate transporter 2 OS=Homo sapiens GN=SLC17A6 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.090e-55
Identity = 108/288 (37.50%), Postives = 167/288 (57.99%), Query Frame = 2 
Query:   83 SSILLAIISF--VWLFLWIFLVHDSPSQHPTISQEEKTMIETSVKKATD---ADKNLVYPWRAIFSSIHVWAIIITHICKNWVWYMVLTGLPSYFKNVLNFDIKKNGFLSALPYIAGMIFQFVGGFLADFLQNNK-LSKQTTKRIMTVFGFYPTAVLLLLTSYTKCDEVYLSVTYMVIATGLLSLNNSGYNINHLDLAPRYSGILYGIENLAGTIPGGVAPAITGYLTNDDPSRENYRKVFAIAASLAAFGGTFFII----------XKPSRNNPGRCGTCHHRLLNK 898
            SS+     SF  VW   W+ + ++SP++HPTI+ EE+  IE S+ ++ +   A +    PWR  F+S+ V+AII+ + C++W +Y++L   P+YF+ V  F+I K G LSA+P++   I   +GG +ADFL++ + LS  T ++IM   GF   A LLL+  Y+    V  +++++V+A G      SG+N+NHLD+APRY+ IL GI N  GT+ G V P I G +T +  SRE ++ VF IAA L  +GG  F              P   +  +CG  H   L++
Sbjct:  243 SSVFYVYGSFGMVWYMFWLLVSYESPAKHPTITDEERRYIEESIGESANLLGAMEKFKTPWRKFFTSMPVYAIIVANFCRSWTFYLLLISQPAYFEEVFGFEISKVGMLSAVPHLVMTIIVPIGGQIADFLRSKQILSTTTVRKIMNCGGFGMEATLLLVVGYSHTRGV--AISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVGAMTKNK-SREEWQYVFLIAA-LVHYGGVIFYAIFASGEKQPWADPEETSEEKCGFIHEDELDE 526
The following BLAST results are available for this feature:
BLAST of TCONS_00009855 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VGLU21.090e-5537.50Vesicular glutamate transporter 2 OS=Homo sapiens ... [more]
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