TCONS_00009855-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00009855-protein
Unique NameTCONS_00009855-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length299

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00009855-protein ID=TCONS_00009855-protein|Name=TCONS_00009855-protein|organism=Clytia hemisphaerica|type=polypeptide|length=299bp
VFFVCFNVKDYVMNIENKKKLNFLMIPSSILLAIISFVWLFLWIFLVHDS
PSQHPTISQEEKTMIETSVKKATDADKNLVYPWRAIFSSIHVWAIIITHI
CKNWVWYMVLTGLPSYFKNVLNFDIKKNGFLSALPYIAGMIFQFVGGFLA
DFLQNNKLSKQTTKRIMTVFGFYPTAVLLLLTSYTKCDEVYLSVTYMVIA
TGLLSLNNSGYNINHLDLAPRYSGILYGIENLAGTIPGGVAPAITGYLTN
DDPSRENYRKVFAIAASLAAFGGTFFIIXKPSRNNPGRCGTCHHRLLNK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005511XLOC_005511Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00009855TCONS_00009855Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.1250.20coord: 78..286
e-value: 2.4E-27
score: 95.0
NoneNo IPR availableGENE3D1.20.1250.20coord: 26..65
e-value: 0.0054
score: 15.5
IPR011701Major facilitator superfamilyPFAMPF07690MFS_1coord: 30..242
e-value: 7.5E-24
score: 84.2
IPR020846Major facilitator superfamily domainCDDcd06174MFScoord: 91..278
e-value: 5.11546E-13
score: 66.1833
IPR020846Major facilitator superfamily domainSUPERFAMILY103473MFS general substrate transportercoord: 30..281

Blast
[Close]
BLAST of TCONS_00009855-protein vs. Swiss-Prot (Human)
Match: VGLU2 (Vesicular glutamate transporter 2 OS=Homo sapiens GN=SLC17A6 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 8.901e-58
Identity = 108/288 (37.50%), Postives = 167/288 (57.99%), Query Frame = 0 
Query:   28 SSILLAIISF--VWLFLWIFLVHDSPSQHPTISQEEKTMIETSVKKATD---ADKNLVYPWRAIFSSIHVWAIIITHICKNWVWYMVLTGLPSYFKNVLNFDIKKNGFLSALPYIAGMIFQFVGGFLADFLQNNK-LSKQTTKRIMTVFGFYPTAVLLLLTSYTKCDEVYLSVTYMVIATGLLSLNNSGYNINHLDLAPRYSGILYGIENLAGTIPGGVAPAITGYLTNDDPSRENYRKVFAIAASLAAFGGTFFII----------XKPSRNNPGRCGTCHHRLLNK 299
            SS+     SF  VW   W+ + ++SP++HPTI+ EE+  IE S+ ++ +   A +    PWR  F+S+ V+AII+ + C++W +Y++L   P+YF+ V  F+I K G LSA+P++   I   +GG +ADFL++ + LS  T ++IM   GF   A LLL+  Y+    V  +++++V+A G      SG+N+NHLD+APRY+ IL GI N  GT+ G V P I G +T +  SRE ++ VF IAA L  +GG  F              P   +  +CG  H   L++
Sbjct:  243 SSVFYVYGSFGMVWYMFWLLVSYESPAKHPTITDEERRYIEESIGESANLLGAMEKFKTPWRKFFTSMPVYAIIVANFCRSWTFYLLLISQPAYFEEVFGFEISKVGMLSAVPHLVMTIIVPIGGQIADFLRSKQILSTTTVRKIMNCGGFGMEATLLLVVGYSHTRGV--AISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVGAMTKNK-SREEWQYVFLIAA-LVHYGGVIFYAIFASGEKQPWADPEETSEEKCGFIHEDELDE 526
The following BLAST results are available for this feature:
BLAST of TCONS_00009855-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VGLU28.901e-5837.50Vesicular glutamate transporter 2 OS=Homo sapiens ... [more]
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