TCONS_00009845 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009845
Unique NameTCONS_00009845
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length661

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009845 ID=TCONS_00009845|Name=TCONS_00009845|organism=Clytia hemisphaerica|type=transcript|length=661bp
TTAGTATATATAAGTGTACCTGTGACTTGAGTAAATCACATTAAAAAGCA
AAAGTCGATTCGACTGTAGCACTTACTaacagaaaaaagaaaattttcga
catATATCAAAAGTAGAGATCAAGAAAGAAGtttcttgtttgcttttttt
ggtATTAACTTTATATTATTGAATATTATATATTCGATTTTTGAACAGTC
ATCGACAGGTGCATGAGCACAATGAAATTACCGCTGTTATTATTTTACGC
GGCTGGCACGCTTGCAGcccCATTCTTAGTCCTTGATGAAGGACTTCCAA
AATCGACAGATGGTCTCCTTGGAAACTGTCAAACATCCCGATTCAACCAG
GGAAAAGCATATTCATATGATTATGCGGGCGAAACGGTTAGCAACATTGA
AGGCGCATCTATACAGTCGACGGGGATGAGGATAAAGTCACGTGTCTTGA
TCACTCCTCTCCAAGAATGCAAGTTCGCCATGTCGTTGAGCAACACTGAG
CTCTCATTAAAGAGCAAGAACCAAGACTTCACCAAGAGTCGAGATTCCAA
TCTCCTTGCTGGTGATCTCCAAAAATACGAGTTACTTTTCACCATGAACG
GTAACAAGATCGAAACTTTGGTTGCCCATGACAACGAACCTACCAACATT
CTCAACATCAA
Run BLAST on NCBI

transcript from alignment at sc0000099:269562..273949-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009845 ID=TCONS_00009845|Name=TCONS_00009845|organism=Clytia hemisphaerica|type=transcript|length=4388bp|location=Sequence derived from alignment at sc0000099:269562..273949- (Clytia hemisphaerica)
TTAGTATATATAAGTGTACCTGTGACTTGAGTAAATCACATTAAAAAGCA
AAAGTCGATTCGACTGTAGCACTTACTAACAGAAAAAAGAAAATTTTCGA
CATATATCAAAAGTAGAGATCAAGAAAGAAGTTTCTTGTTTGCTTTTTTT
GGTATTAACTTTATATTATTGAATATTATATATTCGATTTTTGAACAGTC
ATCGACAGGTGCATGAGCACAATGAAATTACCGCTGTTATTATTTTACGC
GGCTGGCACGCTTGCAGGTATGTGAACATTTTATTTTTGCTATTTTATTC
TTGCCGAATTTTTGTTTGGTAAACTTTTAAGCTATTTGCATATCCTTTTA
ATTTAATTTTACTGCTTAATCTCGCCTGTCATTTTAGGAAAAATACTTCA
GTTTTGTATTTTCCCCAAATTATTTAAATCTTGAATTTAATTCAAAGATC
TTAAGGTAGAAAAGAATTAGCCTAAATTGCTGATGAAATTTGCTTTATTC
ATCTTCTAAAGTTTATCAGTTTAAAAGATCAAAACCCTGCTAACATTCAT
GAAATGTTTGTAGTTTTCAAATAATGTCTTTGTAGCTTTTCGGTGTTATT
TTCGCTTTATAAGGTTCAAATTTTAAAACTATTACGTATTTCGAAAATTG
TATCCTTATTTTGCGTTTCAAAAACTTTTCAACCAAAAAACCATACCTTT
TACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCGGGCCTTTTACCTACCCTT
TTTTAAAGATCTTCTAAAATCCAACTCAAAAGCATATTTTTCCTCAAGAA
GTTCAAAGTCCATTATTGCAATAAAAAAAATTGTCAGGGATTTCCTTTCA
TTAAACCGAGGGTTTCCCTTTGAGGTTTAAGGGGCTTTCCTTTGAGTCAC
GAGTTCTCTTTATAATGTTGACAATACAAATATTGACACAATGTACTTTG
GTCATCAGTATTTGTCATTTTTTGAAAAAATTCAAAAAAACTTTTAACAG
ATTTTCTGAACAAACAATTTTTATTTATTTGCAAGACAATAATAGATTTC
TTACGTAATAGATAGAATTTTACGAATCGATGTCTTTTCCTAAGCTGTTA
AATAGCTTTGAACTAATTATTATTTTATTCTGATTTTAAAAACAGAGAAG
TTGAAACTGACTCGTGCCCCTTGTGATTTAACAACCTTTCACTTGTATCA
ATTTTATCAGATTAAGGTGCCATAAATCAGAGATAATCGTTTTAACAGGT
TAAAAACAATATATTGCACTGTAGATTTAGCGACGAATCTATAAGAAGGC
ATTCTTTCATAACTAAGAATACAGACTTTGCAATTTAAACATATAAAAAC
CTTTTGGATTTAAGTTTATGTTTTCACGAGGGTTAGCAATCCTTCCTTGA
TAAGAAAAACATCTTCCTGTCGCCTACTTTCTTTCATACACTGTAAAAGT
TCCCACAGAAAAATGCATATTTTATGTTTACGTCAAAAGAAAAAACATAT
CCTTTTTTGTAATTGTTCAATAATTTTGTTTGTCTTCTCTTCAACCTATT
TTTGTTTGATTTCAAGAAAAACAAAGCAAGGCGCTAATTAAACAATAGGA
AATACTTAAAGTAATGTTGTTTTCTTGCATATTTTAGCAGAATATCATGT
TTTTTTTTCTTTCTGAGTCTTTTAAAGAGCCTCTCTTAGGCACGGTCGAC
TTATAGATCCCTGAGAAATTTTAGATTTCAAGTTTTTCTTGTTTGTTCAG
TTCAGAGTCACGTCAGAACATGAAATAACCAAAATGTCAAAAAAGAATAA
TGCAAGTTATTGCAAAGATAAACAAAAATATTATTTTGTATCTATTTCTT
CGCTACTCTCTCTCTTGTCATTTTGCCGCTTGTGTTTTTTATAAGAAGCT
AAATGCCAAGAAAAGCCTTGGAATATTGTGGTAGAAACTAAGATAATGTT
AGAAAATAAACTTAAGTCTGTCTTTACTGTAACTCACTAAGAACACTACC
CTGATTCTTGAAAGACTCTTATATAGGATTCTTAAGGATTTACACTTCAT
CTCGTGTCCTATTTCATAAGTGATTGAATTTTCTTCTCATAAATATCAAT
TGGTGTCCCCTCTCTTAAGAAAAGTCATATGACAATCATGTTATTTCTTG
CAAGCTCAAAATAATAATGAAAGGGTCAAATACCTTTCTCACCCAATTGG
GTAATTTTAGAATCTCTTCTTTCAACAAAAAAGATGGCACCTTTCAACAA
CATTACGTAATTTTTTTGAAAAGATTGACAGATTCAATAAGAATTTCAAC
ATACTCCTTTCAAGGTGTCTCCCAATGTTTTCATCAATGACCCTTAAGAC
TAAAATTGCAACATTCTTTTTAGATGCTATGTATATCCCTTACATAGTTA
GCCACGGTAGCCATCAATGATTCCTAAGATGACTTTAAAGCTTTACCAAT
AGGTTTACTAATAAATATATTCCGCGATAAAACAGTTCAACTAATGATAC
GAGCAGTATGTTTTGTCTAGGCCGGCCATCCATACATTTACAGAAATGAC
AAAATTCAGGGAAGAAAAAATAGATTAGTGCCCTATAACCAATTTAAATA
TTCTCTAATAACAATCATCTATATTTTTCGTTTTTTTTTTCTTTTTCAGC
CCCATTCTTAGTCCTTGATGAAGGACTTCCAAAATCGACAGATGGTCTCC
TTGGAAACTGTCAAAGTAAGTTTCTTTGATTGATTATTAATAATGTGGCT
CATTCGCCTTATGCAGTTAATTTGATGTATCTTTTTTCCACTGCACTTTA
CTGCAAATCATTAATCATTCTTTAACGCAAATTTTACTTTTGCAAATCTT
TAAACAAAGAACTAGCTTTTTAAATGTCATCTTTCTGATTCTGAATTCCA
TGACCTCATTTCTTAAGATAAATTCGATAACATTTTCTTCTTATTTCAGC
ATCCCGATTCAACCAGGGAAAAGCATATTCATATGATTATGCGGGCGAAA
CGGTTAGCAACATTGAAGGCGCATCTATACAGTCGACGGGGATGAGGATA
AAGTCACGTGTCTTGATCACTCCTCTCCAAGAATGCAAGTTCGCCATGTC
GGTAAGTCAATTCTTTCTGTACGAAACACTGCTCTTTTGATTTGAATAAA
CGAGACAAATCAGATAGAGAAGTCATTTTTATCTATACGAAACGCTTTTG
TTTTAATTTGAATAAACGAGGCAATACAAGATACGCTCCCTTATTTGATG
AAAATTTCCTCTTAAAAATTAAATTACAGAGCGTCGAATTTACCTCCTAT
TCTAGTCTTTGAAATACATTTCTTCTGTTTTTTCACACCTTTAGTTGAGC
AACACTGAGCTCTCATTAAAGAGCAAGAACCAAGACTTCACCAAGAGTCG
AGATTCCAATCTCCTTGCTGGTGATCTCCAAAAATACGAGTTACTTTTCA
CCATGAACGGTAACAAGATCGAAACTTTGGTTGCCCATGACAACGAACCT
ACCAACATTCTCAACATCAAGAGAGGTATGTGTGTGGCAAATCATTTACA
TCGATTTTTGTTCCAGTCTAGCGATTGGTCGCCTGATATTACTACAATAT
CACTTAAATTTCATATATCCTAACTCAGAATTGCGACGTCACTCGTTATT
GTCATCACAGTGTCAAAGGAAATATTCTAAATCATGGAAAAAATCTTAGA
AAAGCCCCTTAGCCAAACCTGAACTAAGATACGAATTTTATCAATTTGTT
AACTATTGAATCTCTTCTTTTCTTCCTCCTAGGTATCTTAAGCATCTTGC
AATTTGATCAAGACCAAACCACCGAGAAAGACGTCAACGGAATCTGTTCA
TCAACCATCAAAAAGGAACCTGACAACACATTCACCGAAACCAAGAAACT
CCATGAATGCAAAGAACGTGCTCAAAATGAATACGGTGTCCAAGCCGCTT
CATTCCAAACTGAATCTGCTATTAAACCATTAGGTATGTGGTAATTTATT
TACAAAAGTTTTTTTCTCATACTCCCATCTCTTTTANCGAAACTTTGGTT
GCCCATGACAACGAACCTACCAACATTCTCAACATCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005505XLOC_005505Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009845-exon-sc0000099-1575043694:273683..273949TCONS_00009845-exon-sc0000099-1575043694:273683..273949Clytia hemisphaericaexon
TCONS_00009845-exon-sc0000099-1575043694:270935..271000TCONS_00009845-exon-sc0000099-1575043694:270935..271000Clytia hemisphaericaexon
TCONS_00009845-exon-sc0000099-1575043694:270549..270700TCONS_00009845-exon-sc0000099-1575043694:270549..270700Clytia hemisphaericaexon
TCONS_00009845-exon-sc0000099-1575043694:270144..270305TCONS_00009845-exon-sc0000099-1575043694:270144..270305Clytia hemisphaericaexon
TCONS_00009845-exon-sc0000099-1575043694:269562..269575TCONS_00009845-exon-sc0000099-1575043694:269562..269575Clytia hemisphaericaexon
TCONS_00009845-exon-sc0000099-1510915933:273683..273949TCONS_00009845-exon-sc0000099-1510915933:273683..273949Clytia hemisphaericaexon
TCONS_00009845-exon-sc0000099-1510915933:270935..271000TCONS_00009845-exon-sc0000099-1510915933:270935..271000Clytia hemisphaericaexon
TCONS_00009845-exon-sc0000099-1510915933:270549..270700TCONS_00009845-exon-sc0000099-1510915933:270549..270700Clytia hemisphaericaexon
TCONS_00009845-exon-sc0000099-1510915933:270144..270305TCONS_00009845-exon-sc0000099-1510915933:270144..270305Clytia hemisphaericaexon
TCONS_00009845-exon-sc0000099-1510915933:269562..269575TCONS_00009845-exon-sc0000099-1510915933:269562..269575Clytia hemisphaericaexon
TCONS_00009845-exon-sc0000099-1491911889:273683..273949TCONS_00009845-exon-sc0000099-1491911889:273683..273949Clytia hemisphaericaexon
TCONS_00009845-exon-sc0000099-1491911889:270935..271000TCONS_00009845-exon-sc0000099-1491911889:270935..271000Clytia hemisphaericaexon
TCONS_00009845-exon-sc0000099-1491911889:270549..270700TCONS_00009845-exon-sc0000099-1491911889:270549..270700Clytia hemisphaericaexon
TCONS_00009845-exon-sc0000099-1491911889:270144..270305TCONS_00009845-exon-sc0000099-1491911889:270144..270305Clytia hemisphaericaexon
TCONS_00009845-exon-sc0000099-1491911889:269562..269575TCONS_00009845-exon-sc0000099-1491911889:269562..269575Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000099supercontigsc0000099:269562..273949 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0888711	0.0869465	0	0	0.519228	1.32262	1.23643	1.985	7.01835	3.05714	7.08918	8.15378	7.07122	8.1988	12.4144	18.3194	14.1972	17.3923	42.6044	39.4755	9.65101	23.6944	131.936	94.093	127.095	92.0975	61.3025	65.4367
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009845 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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