|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009843 ID=TCONS_00009843|Name=TCONS_00009843|organism=Clytia hemisphaerica|type=transcript|length=18253bp protein sequence of TCONS_00009843-protein >TCONS_00009843-protein ID=TCONS_00009843-protein|Name=TCONS_00009843-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1933bp MSTMKLPLLLFYAAGTLAAPFLVLDEGLPKSTDGLLGNCQTSRFNQGKAYRun BLAST on NCBI transcript from alignment at sc0000099:245347..273949- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009843 ID=TCONS_00009843|Name=TCONS_00009843|organism=Clytia hemisphaerica|type=transcript|length=28603bp|location=Sequence derived from alignment at sc0000099:245347..273949- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000099:245347..273949- >TCONS_00009843 ID=TCONS_00009843|Name=TCONS_00009843|organism=Clytia hemisphaerica|type=CDS|length=116040bp|location=Sequence derived from alignment at sc0000099:245347..273949- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009843 vs. Swiss-Prot (Human)
Match: APOB (Apolipoprotein B-100 OS=Homo sapiens GN=APOB PE=1 SV=2) HSP 1 Score: 206.453 bits (524), Expect = 4.057e-52 Identity = 252/1011 (24.93%), Postives = 443/1011 (43.82%), Query Frame = 3
Query: 336 SRFNQGKAYSYDYAGETVSNIEGASIQSTGMRIKSRVLITPLQECKFAMSLSNTEL-SLKSKNQD----FTKSRDSNLLAGDLQKYELLFTMNGNKIETLVAHDNEPTNILNIKRGILSILQFDQDQTTEKD------VNGICSS--TIKKEPDNTFTET---KKLHECKERAQNEYGVQAASFQTESAIKPL----DSTSKCNFVM--KGNIIKSVECNEKHIFRPFSAGYESASGAMTFVKQSMRF-NGPTAALRINLNAGSYNKQSTLVFDHEKEELKSTKALSA--TAESIMESLVSKKSLS-AQQN--SAHEFTALVMALRKMNQKAMTPIWDQYFECKSCSEDLKSVYRQYLLDAIAYCGTSTCVSFVRDVIVNGEMQGERVNMFLQSIALVADTSKDMIRDVLEIVKKQPTRQAYLTLGTLMNRHCTKTPKDCDFAQNNPVSIAE-----SYLEKKLGKNCDGQENYERVEELLMVLKAMGNA--RRPARVRSTLLKCAENSKHA-NITHSVFHAFKSMPCSDNLFTDEILKFIKNQEIDP-EKRIHAFRAAVSCPSEYVLERLVATLEKEPSKQVASYMWTTFSNIMESNSVEQANAREXXXXXXXXXXXXVVDLPHHQYSKFFE--KTL---GVQDAGVTAEGQLIFHPDGYLPRTAMFNLKGNLLG-NSIDLFESMVYVEGAEDMIGELVGIDGLFSKDF---LYEVFNSSMTMDKLKEMYYNH----QDQKREVKMT-GRMNKIHNQVNMKPTK--PTAHINIKVMGQEVRVFSYDDLYWLIDEIDN-----MNVIQLLTNAATGGHKT-FTKSLMFLELTHVVPTGMGLPLKMKLTGSTVASLELDGKFDIRNMFWGPGSIHVKGSIKPSAVVELSGQMG-IDSVYASSGIFVNTSMFTSNELKGNVIYQNGKILKINLDTPEEPITLFNVSSTPFMYLNEESNLIQG-TERRISPDYCLKSKMIGYGICTSVRIPFAFREYEAPYFPLSGPAHYGVKL 3185
+RF + Y+Y+Y E+ S + G + + RI +V + Q C F + S L + N + K+++S A + +YEL + K L +EPT ILNIKRGI+S L + K V G CS+ T+K N TE + L +C G+ + + +PL S+ C + + K + C E+H+F PFS Y++ G + V Q+++ + P R G K+ L F+ STK+ S AE+++++L K L+ ++QN A+ F LV LR ++ +A+T + Q E S L A+ CG C + + + +++ +AL+ + S +R++ + + Q +R L +N ++ + NP E +YL +++ +C G E+Y + +L V+ MG + ++S++LKC +++K + I + A + M D E+L + P +KR+ A+ + PS+ + ++V L E ++QV +++ + +NI+ S ++ + ++L+K+ K L V + ++S+ ++ K++ + A EG LIF P+ YLP+ +M G S DL E + +G E + L G G F LY V + D + ++ +H +D K E M G M + + +K P A ++++G+E+ S DL L + + Q++ G K F +F+E +PTG GL L++ +G + K ++ NM + KPS VE MG I +A SG+ +NT+ F + L+ +V + GK LK + +P+ P+ L + +T + ++ +I E R S C K G CTS A A Y+PL+G ++L
Sbjct: 44 TRFKHLRKYTYNYEAESSSGVPGTADSRSATRINCKVELEVPQLCSFILKTSQCTLKEVYGFNPEGKALLKKTKNSEEFAAAMSRYELKLAIPEGKQVFLYPEKDEPTYILNIKRGIISALLVPPETEEAKQVLFLDTVYGNCSTHFTVKTRKGNVATEISTERDLGQCDRFKPIRTGISPLAL-IKGMTRPLSTLISSSQSCQYTLDAKRKHVAEAICKEQHLFLPFS--YKNKYGMVAQVTQTLKLEDTPKINSRF---FGEGTKKMGLAFE-------STKSTSPPKQAEAVLKTLQELKKLTISEQNIQRANLFNKLVTELRGLSDEAVTSLLPQLIEVSSP----------ITLQALVQCGQPQCSTHILQWLKRVHANPLLIDVVTYLVALIPEPSAQQLREIFNMARDQRSRATLYALSHAVN----------NYHKTNPTGTQELLDIANYLMEQIQDDCTGDEDYTYL--ILRVIGNMGQTMEQLTPELKSSILKCVQSTKPSLMIQKAAIQALRKMEPKDK--DQEVLLQTFLDDASPGDKRLAAYLMLMRSPSQADINKIVQILPWEQNEQVKNFVASHIANILNSEELDIQDLKKLVKEALKESQLPTV-MDFRKFSRNYQLYKSVSLPSLDPASAKIEGNLIFDPNNYLPKESMLKTTLTAFGFASADLIEIGLEGKGFEPTLEALFGKQGFFPDSVNKALYWV--NGQVPDGVSKVLVDHFGYTKDDKHEQDMVNGIMLSVEKLIKDLKSKEVPEARAYLRILGEELGFASLHDLQLLGKLLLMGARTLQGIPQMIGEVIRKGSKNDFFLHYIFMENAFELPTGAGLQLQISSSGVIAPGAKAGVKLEVANM-------QAELVAKPSVSVEFVTNMGIIIPDFARSGVQMNTNFFHESGLEAHVALKAGK-LKFIIPSPKRPVKLLSGGNTLHLVSTTKTEVIPPLIENRQSWSVC-KQVFPGLNYCTSGAYSNASSTDSASYYPLTGDTRLELEL 1005 The following BLAST results are available for this feature:
BLAST of TCONS_00009843 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.