TCONS_00009833 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009833
Unique NameTCONS_00009833
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1099

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009833 ID=TCONS_00009833|Name=TCONS_00009833|organism=Clytia hemisphaerica|type=transcript|length=1099bp
CGCAACTTGACTGAGACACTTGACGGAATTCCACCAACACACATATTCAA
TTTCGATGAGACCAACTTCACCGATTGTCCCCAACGGAACAGAGTCATTG
TACGAACTGGTTTACGTCGTGTTGAAAACATCTTGCCTAACTCGAAGCAA
GCGTTTTCGATTATGTTTTGTGGAAATGCAGCAGTCACTATATTCCGCAG
ATGGTGGTATATAAGGCTGGAAATTGTTGGACAACTTGGAAAGAAAATGG
TCCAGAAGGCGCCGTTTACGAGAGCACTCAAAGCGGTTGGTTCGATATGC
CAACATTCACGATCTGGTTCAAAACCTGCTTTCTGCCAAACATCCAACAG
TTTCCCGGCCGAAAGATCATCATCGGCGACAACTTAGGTTGTCATTTTAG
TGAAGAAGTGATCACCATGtgtaaaaacaacaacattggTTTCGTGCCAC
TTATTGCCAATTCAACGCATTTAACTCAACCACTAGACGTGTCCGTCTTT
CGCCCGTTAAAGGTTACGTGGAGCAATACCCTAAAGAGATGGAGAAGAGA
CACGCGTTATACAAAGGCTATACCTAAGCAGACCTTTCCAACGCTACTAA
ATCAAACTTACAGTAAAATGAAGGTCGAACTTAAAGATGCCTTGGTTTCA
GGATTTCGAACGTGCGGTATTGTGCCAGTGAATGCCAATCAAATTCTCGT
AAATTACCGGGAGCAAACAGAGACGGTGGAGTTCTTGTACATATGGATCA
ATCGATCCTACAGTATCTAAAGCAACAATTCCCTGAAAATCCTCCAAAAG
GTTAGTACAAGTGTCAGCTAGGTATTTCCTTATTGTCCTAAAAGCAATAA
GCGTCACAGGCAAGCATGCGGAAAATTTTGTTATACTTCGCGAGTACCGA
CAATCTTCTGTCATGAAATGCGAAATACAAcaaattgcatttttttcttt
tagtaaCGTTGAAAAGAGGCAAAAAAGTCATTCCAGGCGCCGATTTCGCC
AAACAGTCATCGTTGGCTGGAACAAGTCCTGCAACAACATCTTCATCAAC
AACGTCTCCGTCAACAACGTCTTTGTCGacgcgaatttttttttcgtac
Run BLAST on NCBI

protein sequence of TCONS_00009833-protein

>TCONS_00009833-protein ID=TCONS_00009833-protein|Name=TCONS_00009833-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
MVVYKAGNCWTTWKENGPEGAVYESTQSGWFDMPTFTIWFKTCFLPNIQQ
FPGRKIIIGDNLGCHFSEEVITMCKNNNIGFVPLIANSTHLTQPLDVSVF
RPLKVTWSNTLKRWRRDTRYTKAIPKQTFPTLLNQTYSKMKVELKDALVS
GFRTCGIVPVNANQILVNYREQTETVEFLYIWINRSYSI
Run BLAST on NCBI

transcript from alignment at sc0000099:10462..12750-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009833 ID=TCONS_00009833|Name=TCONS_00009833|organism=Clytia hemisphaerica|type=transcript|length=2289bp|location=Sequence derived from alignment at sc0000099:10462..12750- (Clytia hemisphaerica)
CGCAACTTGACTGAGACACTTGACGGAATTCCACCAACACACATATTCAA
TTTCGATGAGACCAACTTCACCGATTGTCCCCAACGGAACAGAGTAAGGG
CTTTGTGTATTTTACATTTACGCCGTCAGCAATTAGGCAAAAAATTTAAC
ATCCCCTATTGTCTTTATTTTTGCTGACGTCATATCTAAGTATTTTCTTA
AAGATTGACCATTCGATCCAGACCTGGGGTAGATTAGTTTCCCAATTCTC
CCAAAATCCAATGTTCAGTTTTCATGACGTCATCAATTAGAGTATATCAT
GTTTCCGTATTTTTTGCTTTGGGGAAAGTAAGGGGGAAAATTATTTCACA
CCTCTGTAGGTAATGTTCATCCTAGTACCATCTTTACTCAGTCAATGATC
TGTGGGTTTTCTGTTGGCTAATGTTTTCTGAAAATTATATTAATTTTACA
CACTATAGAGCCGCGGGCCTAGACTTACCTGAAAGTTGTTTTTTGATAGA
AAAATCACCTCTTCTGTGAAGCATACAATTGTACACAATTCTATGTACCT
TTCCTCATTAGAAGAGTATTTGCTTTCTCCTTGTAGGTCATTGTACGAAC
TGGTTTACGTCGTGTTGAAAACATCTTGCCTAACTCGAAGCAAGCGTTTT
CGATTATGTTTTGTGGAAATGCAGCAGTCACTATATTCCGCAGATGGTGG
TATATAAGGCTGGAAATTGTTGGACAACTTGGAAAGAAAATGGTCCAGAA
GGTTTGTATCCCTTTATTATTGTAACACAAACACTTGTTATTTTATACCT
TGTACGATAAAGTTTACAGGGGAATTCTTTCCAATTCAGCCCATACACGC
TTTTTTCTATACGAATAGTTTGGCTGAGGGTCAAGTATTCTTAAGAAATA
GCAGAAATTGAGGGTGAAATACTCGCAATGTGTTCTTATACTTTTTCAGA
CTTTACCTCTATACAAACATAAATGTCCTATTTGGGAGTTTCATGTTATT
TTGCACACATTTGAAGCTAAAATTCTATTTCTACCTTAAAGTTTCAATTT
AGGTCGAACAAAAAACCCAGTTATTCTTGTTACCAAATAGAAAATGACTA
TGATCTTATCAAGATTTGTGAAACTCACACAAATCTATTTTTTTAAATGG
AGCTTCACGACTCTTAAGATTGCGGTTGACCTTTTCATATTTCGGCCTTG
AATGCATCTAAATTAATTTGCTGTTATAGGCGCCGTTTACGAGAGCACTC
AAAGCGGTTGGTTCGATATGCCAACATTCACGATCTGGTTCAAAACCTGC
TTTCTGCCAAACATCCAACAGTTTCCCGGCCGAAAGATCATCATCGGCGA
CAACTTAGGTTGTCATTTTAGTGAAGAAGTGATCACCATGTGTAAAAACA
ACAACATTGGTTTCGTGCCACTTATTGCCAATTCAACGCATTTAACTCAA
CCACTAGACGTGTCCGTCTTTCGCCCGTTAAAGGTTACGTGGAGCAATAC
CCTAAAGAGATGGAGAAGAGACACGCGTTATACAAAGGCTATACCTAAGC
AGACCTTTCCAACGCTACTAAATCAAACTTACAGTAAAATGAAGGTCGAA
CTTAAAGATGCCTTGGTTTCAGGTAGGTGTAAGGTTTTTTTCACATAGAA
ACTGGCTTAAAAACGTTACCCGAAATTGCAGTGAAAAGAGGATTGCATTA
AACGCCGTTCTGTTCTGAAATATGGAGGAAAAAGTTAATCTTAATGTGTC
CTTAAGTTTTCGTAAAATTGCACTCTCATGTTTAGATTAAATAGCACTTA
TAAAGATCCTTTATAAAGAAATTCTTACGCTATATCTCTAGGATTTCGAA
CGTGCGGTATTGTGCCAGTGAATGCCAATCAAATTCTCGTAAATTACCGG
GAGCAAACAGAGACGGTGGAGTTCTTGTACATATGGATCAATCGATCCTA
CAGTATCTAAAGCAACAATTCCCTGAAAATCCTCCAAAAGGTTAGTACAA
GTGTCAGCTAGGTATTTCCTTATTGTCCTAAAAGCAATAAGCGTCACAGG
CAAGCATGCGGAAAATTTTGTTATACTTCGCGAGTACCGACAATCTTCTG
TCATGAAATGCGAAATACAACAAATTGCATTTTTTTCTTTTAGTAACGTT
GAAAAGAGGCAAAAAAGTCATTCCAGGCGCCGATTTCGCCAAACAGTCAT
CGTTGGCTGGAACAAGTCCTGCAACAACATCTTCATCAACAACGTCTCCG
TCAACAACGTCTTTGTCGACGCGAATTTTTTTTTCGTAC

Coding sequence (CDS) from alignment at sc0000099:10462..12750-

>TCONS_00009833 ID=TCONS_00009833|Name=TCONS_00009833|organism=Clytia hemisphaerica|type=CDS|length=1710bp|location=Sequence derived from alignment at sc0000099:10462..12750- (Clytia hemisphaerica)
GATTTCGAACGTGCGGTATTGTGCCAGTGAATGCCAATCAAATTCTCGTA
AATTACCGGGAGCAAACAGAGACGGTGGAGTTCTTGTACATATGGATCAA
TCGATCCTACAGTATCTAAGCGCCGTTTACGAGAGCACTCAAAGCGGTTG
GTTCGATATGCCAACATTCACGATCTGGTTCAAAACCTGCTTTCTGCCAA
ACATCCAACAGTTTCCCGGCCGAAAGATCATCATCGGCGACAACTTAGGT
TGTCATTTTAGTGAAGAAGTGATCACCATGTGTAAAAACAACAACATTGG
TTTCGTGCCACTTATTGCCAATTCAACGCATTTAACTCAACCACTAGACG
TGTCCGTCTTTCGCCCGTTAAAGGTTACGTGGAGCAATACCCTAAAGAGA
TGGAGAAGAGACACGCGTTATACAAAGGCTATACCTAAGCAGACCTTTCC
AACGCTACTAAATCAAACTTACAGTAAAATGAAGGTCGAACTTAAAGATG
CCTTGGTTTCAGATGGTGGTATATAAGGCTGGAAATTGTTGGACAACTTG
GAAAGAAAATGGTCCAGAAGGATTTCGAACGTGCGGTATTGTGCCAGTGA
ATGCCAATCAAATTCTCGTAAATTACCGGGAGCAAACAGAGACGGTGGAG
TTCTTGTACATATGGATCAATCGATCCTACAGTATCTAAGCGCCGTTTAC
GAGAGCACTCAAAGCGGTTGGTTCGATATGCCAACATTCACGATCTGGTT
CAAAACCTGCTTTCTGCCAAACATCCAACAGTTTCCCGGCCGAAAGATCA
TCATCGGCGACAACTTAGGTTGTCATTTTAGTGAAGAAGTGATCACCATG
TGTAAAAACAACAACATTGGTTTCGTGCCACTTATTGCCAATTCAACGCA
TTTAACTCAACCACTAGACGTGTCCGTCTTTCGCCCGTTAAAGGTTACGT
GGAGCAATACCCTAAAGAGATGGAGAAGAGACACGCGTTATACAAAGGCT
ATACCTAAGCAGACCTTTCCAACGCTACTAAATCAAACTTACAGTAAAAT
GAAGGTCGAACTTAAAGATGCCTTGGTTTCAGATGGTGGTATATAAGGCT
GGAAATTGTTGGACAACTTGGAAAGAAAATGGTCCAGAAGGATTTCGAAC
GTGCGGTATTGTGCCAGTGAATGCCAATCAAATTCTCGTAAATTACCGGG
AGCAAACAGAGACGGTGGAGTTCTTGTACATATGGATCAATCGATCCTAC
AGTATCTAAGCGCCGTTTACGAGAGCACTCAAAGCGGTTGGTTCGATATG
CCAACATTCACGATCTGGTTCAAAACCTGCTTTCTGCCAAACATCCAACA
GTTTCCCGGCCGAAAGATCATCATCGGCGACAACTTAGGTTGTCATTTTA
GTGAAGAAGTGATCACCATGTGTAAAAACAACAACATTGGTTTCGTGCCA
CTTATTGCCAATTCAACGCATTTAACTCAACCACTAGACGTGTCCGTCTT
TCGCCCGTTAAAGGTTACGTGGAGCAATACCCTAAAGAGATGGAGAAGAG
ACACGCGTTATACAAAGGCTATACCTAAGCAGACCTTTCCAACGCTACTA
AATCAAACTTACAGTAAAATGAAGGTCGAACTTAAAGATGCCTTGGTTTC
AGATGGTGGTATATAAGGCTGGAAATTGTTGGACAACTTGGAAAGAAAAT
GGTCCAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005499XLOC_005499Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009833-proteinTCONS_00009833-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009833-exon-sc0000099-1575043694:12658..12750TCONS_00009833-exon-sc0000099-1575043694:12658..12750Clytia hemisphaericaexon
TCONS_00009833-exon-sc0000099-1575043694:12000..12164TCONS_00009833-exon-sc0000099-1575043694:12000..12164Clytia hemisphaericaexon
TCONS_00009833-exon-sc0000099-1575043694:11129..11521TCONS_00009833-exon-sc0000099-1575043694:11129..11521Clytia hemisphaericaexon
TCONS_00009833-exon-sc0000099-1575043694:10462..10909TCONS_00009833-exon-sc0000099-1575043694:10462..10909Clytia hemisphaericaexon
TCONS_00009833-exon-sc0000099-1510915933:12658..12750TCONS_00009833-exon-sc0000099-1510915933:12658..12750Clytia hemisphaericaexon
TCONS_00009833-exon-sc0000099-1510915933:12000..12164TCONS_00009833-exon-sc0000099-1510915933:12000..12164Clytia hemisphaericaexon
TCONS_00009833-exon-sc0000099-1510915933:11129..11521TCONS_00009833-exon-sc0000099-1510915933:11129..11521Clytia hemisphaericaexon
TCONS_00009833-exon-sc0000099-1510915933:10462..10909TCONS_00009833-exon-sc0000099-1510915933:10462..10909Clytia hemisphaericaexon
TCONS_00009833-exon-sc0000099-1491911889:12658..12750TCONS_00009833-exon-sc0000099-1491911889:12658..12750Clytia hemisphaericaexon
TCONS_00009833-exon-sc0000099-1491911889:12000..12164TCONS_00009833-exon-sc0000099-1491911889:12000..12164Clytia hemisphaericaexon
TCONS_00009833-exon-sc0000099-1491911889:11129..11521TCONS_00009833-exon-sc0000099-1491911889:11129..11521Clytia hemisphaericaexon
TCONS_00009833-exon-sc0000099-1491911889:10462..10909TCONS_00009833-exon-sc0000099-1491911889:10462..10909Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000099supercontigsc0000099:10462..12750 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.145565	0.155489	0.16514	0.0441571	1.18265	0.876061	1.87028	2.21166	0.944119	1.35157	1.61049	0.73563	0.265114	0.440517	0.113177	0.221456	0.0299247	0.0306719	0.127125	0.0642	0.0385415	0.169193	0.155435	0.0415531	0.213994	0.114591	0.163979	0.233337	0	0.0901561
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004875DDE_SF_endonuclease_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009833 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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