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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009829 ID=TCONS_00009829|Name=TCONS_00009829|organism=Clytia hemisphaerica|type=transcript|length=2297bpRun BLAST on NCBI transcript from alignment at sc0000099:611189..625046+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009829 ID=TCONS_00009829|Name=TCONS_00009829|organism=Clytia hemisphaerica|type=transcript|length=13858bp|location=Sequence derived from alignment at sc0000099:611189..625046+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00009829 vs. Swiss-Prot (Human)
Match: ZN431 (Zinc finger protein 431 OS=Homo sapiens GN=ZNF431 PE=2 SV=2) HSP 1 Score: 165.236 bits (417), Expect = 3.321e-43 Identity = 105/345 (30.43%), Postives = 168/345 (48.70%), Query Frame = 1
Query: 874 FKCNHCGKCFTTDLTLDSHNCTLPQTSSSMKCHVCGLKFEQSSHLEFHLTVHQDFERRYQETKNRCFKCYMCDRSFPTMAHLKMHQVLH--DMSIQCQKCIQHFKTKEMLDQHQCIRQQLDSKHPCHKCELKFESFVELQQHLKTHIVPKDFKTNSKTEVFICYLCGHHAFSKPEMRYHFRIHL--KRFECHVCGQYFTKSSELEKHSVIHSATQ-FTCRKCGKVLDSEPAFLIHLDIHADEAAFKFECSVCGKRFHVLSNLESHLKVHAAEKTYKCDVLGQGLNQTYRVKEHTKLVHSKPRQYKCTVCGQKFDQASRVKEHIASVHSKPRQYKCSVCEQGFDQA 1893
++C CGK F TL H + KC CG F+QSS L H +H T + ++C C ++F +HL H+++H + +C++C + F L H+ I + + C +C+ F F L +H H K +K C CG + H RIH K ++C VCG+ F +SS L H +IH+ + + C +CGK + P H IH E +K C CGK F S L +H ++H EK YKC+ G+ N++ + +H K++H+ + YKC CG+ F+Q+S + +H +H++ + Y C C+ F+Q+
Sbjct: 232 YQCEECGKAFKWFSTLTRHK-RIHTGEKPFKCEECGKAFKQSSTLTTHKIIH---------TGEKPYRCEECGKAFNRSSHLTTHKIIHTGEKPYKCEECGKAFNQSSTLSTHKFIHAG-EKPYKCEECDKAFNRFSYLTKHKIIHTGEKSYK---------CEECGKGFNWSSTLTKHKRIHTGEKPYKCEVCGKAFNESSNLTTHKMIHTGEKPYKCEECGKAFNRSPQLTAHKIIHTGEKPYK--CEECGKAFSQSSILTTHKRIHTGEKPYKCEECGKAFNRSSNLTKH-KIIHTGEKSYKCEECGKAFNQSSTLTKH-RKIHTRQKPYNCEECDNTFNQS 552 HSP 2 Score: 142.51 bits (358), Expect = 1.574e-35 Identity = 95/319 (29.78%), Postives = 147/319 (46.08%), Query Frame = 1
Query: 874 FKCNHCGKCFTTDLTLDSHNCTLPQTSSSMKCHVCGLKFEQSSHLEFHLTVHQDFERRYQETKNRCFKCYMCDRSFPTMAHLKMHQVLH--DMSIQCQKCIQHFKTKEMLDQHQCIRQQLDSKHPCHKCELKFESFVELQQHLKTHIVPKDFKTNSKTEVFICYLCGHHAFSKPEMRYHFRIHL--KRFECHVCGQYFTKSSELEKHSVIHSATQ-FTCRKCGKVLDSEPAFLIHLDIHADEAAFKFECSVCGKRFHVLSNLESHLKVHAAEKTYKCDVLGQGLNQTYRVKEHTKLVHSKPRQYKCTVCGQKFDQASRV 1815
FKC CGK F TL +H + +C CG F +SSHL H +H T + +KC C ++F + L H+ +H + +C++C + F L +H+ I S + C +C F L +H + H K +K C +CG + H IH K ++C CG+ F +S +L H +IH+ + + C +CGK H IH E +K C CGK F+ SNL H +H EK+YKC+ G+ NQ+ + +H K +H++ + Y C C F+Q+S +
Sbjct: 260 FKCEECGKAFKQSSTLTTHK-IIHTGEKPYRCEECGKAFNRSSHLTTHKIIH---------TGEKPYKCEECGKAFNQSSTLSTHKFIHAGEKPYKCEECDKAFNRFSYLTKHKIIHTGEKS-YKCEECGKGFNWSSTLTKHKRIHTGEKPYK---------CEVCGKAFNESSNLTTHKMIHTGEKPYKCEECGKAFNRSPQLTAHKIIHTGEKPYKCEECGKAFSQSSILTTHKRIHTGEKPYK--CEECGKAFNRSSNLTKHKIIHTGEKSYKCEECGKAFNQSSTLTKHRK-IHTRQKPYNCEECDNTFNQSSNL 555 HSP 3 Score: 136.346 bits (342), Expect = 1.752e-33 Identity = 100/343 (29.15%), Postives = 162/343 (47.23%), Query Frame = 1
Query: 1057 TKNRCFKCYMCDRSFPTMAHLKMHQVLH--DMSIQCQKCIQHFKTKEMLDQHQCIRQQLDSKHPCHKCELKFESFVELQQHLKTHIVPKDFK-------------------TNSKTEVFICYLCGHHAFSKPEMRYHFRIHL--KRFECHVCGQYFTKSSELEKHSVIHSATQ-FTCRKCGKVLDSEPAFLIHLDIHADEAAFKFECSVCGKRFHVLSNLESHLKVHAAEKTYKCDVLGQGLNQTYRVKEHTKLVHSKPRQYKCTVCGQKFDQASRVKEHIASVHSKPRQYKCSVCEQGFDQAXXXXXXXXXXXXXPRHYHECNVCGEKFNTRSRLDRHLKAH 2013
T + FKC C +SF + HL H+ +H + S QC++C + FK L +H+ I + C +C F+ L H H K ++ ++ + + C CG + H IH K ++C C + F + S L KH +IH+ + + C +CGK + H IH E +K C VCGK F+ SNL +H +H EK YKC+ G+ N++ ++ H K++H+ + YKC CG+ F Q+S + H +H+ + YKC C + F+++S + +H + ++C CG+ FN S L +H K H
Sbjct: 199 TGKKPFKCKKCGKSFCMLLHLSQHKRIHIRENSYQCEECGKAFKWFSTLTRHKRIHTG-EKPFKCEECGKAFKQSSTLTTHKIIHTGEKPYRCEECGKAFNRSSHLTTHKIIHTGEKPYKCEECGKAFNQSSTLSTHKFIHAGEKPYKCEECDKAFNRFSYLTKHKIIHTGEKSYKCEECGKGFNWSSTLTKHKRIHTGEKPYK--CEVCGKAFNESSNLTTHKMIHTGEKPYKCEECGKAFNRSPQLTAH-KIIHTGEKPYKCEECGKAFSQSSILTTH-KRIHTGEKPYKCEECGKAFNRSSNLTKHKIIHTGEKS--YKCEECGKAFNQSSTLTKHRKIH 534 HSP 4 Score: 118.627 bits (296), Expect = 1.057e-27 Identity = 91/304 (29.93%), Postives = 138/304 (45.39%), Query Frame = 1
Query: 1204 HQCIRQQLDSKHPCHKCELKFESFVELQQHLKTHIVPKDFKTNSKTEVFICYLCGHHAFSKPEMRYHFRIHLKR--FECHVCGQYFTKSSELEKHSVIHSATQ-FTCRKCGKVLDSEPAFLIHLDIHADEAAFKFECSVCGKRFHVLSNLESHLKVHAAEKTYKCDVLGQGLNQTYRVKEHTKLVHSKPRQYKCTVCGQKFDQASRVKEHIASVHSKPRQYKCSVCEQGFDQAXXXXXXXXXXXXXPRHYHECNVCGEKFNTRSRLDRHLKAHKS-----CSVC-KLKVHSEQFVSHMKTHTTD 2088
+QC+ PC K F F+ +H H K FK C CG + H RIH++ ++C CG+ F S L +H IH+ + F C +CGK H IH E ++ C CGK F+ S+L +H +H EK YKC+ G+ NQ+ + H K +H+ + YKC C + F++ S + +H +H+ + YKC C +GF+ +S + +H + + ++C VCG+ FN S L H H C C K S Q +H HT +
Sbjct: 165 NQCLTTTQSKIFPCDKYVKVFHKFLNANRHKTRHTGKKPFK---------CKKCGKSFCMLLHLSQHKRIHIRENSYQCEECGKAFKWFSTLTRHKRIHTGEKPFKCEECGKAFKQSSTLTTHKIIHTGEKPYR--CEECGKAFNRSSHLTTHKIIHTGEKPYKCEECGKAFNQSSTLSTH-KFIHAGEKPYKCEECDKAFNRFSYLTKHKI-IHTGEKSYKCEECGKGFNWSSTLTKHKRIHTGEKP--YKCEVCGKAFNESSNLTTHKMIHTGEKPYKCEECGKAFNRSPQLTAHKIIHTGE 453 The following BLAST results are available for this feature:
BLAST of TCONS_00009829 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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