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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009814 ID=TCONS_00009814|Name=TCONS_00009814|organism=Clytia hemisphaerica|type=transcript|length=1061bp
TTTGCACTTGGATTTGTTTTTGGACCATTACTGAATATTCCTTTCGCAAA
TGAAAATTTCTTACTTTTTGGAATCCCGATTTCGTACGCTAACGCACCTG
GGCTGGTACTAAGTGTTATTTTCATGGTGATTCAGTTACTGGATTTTTAT
TTGGTTTCGAATTTATCATTGGAATATGATATGAAAGAATTTGGTGATGG
TGATAGTGGAAGCCAATATTCAATCATTAGTAATGATAGCAGTGGCGAAG
ATGGCGGTGTTGATGGTGGTGGTAAAAGTCAATATTCAATCATTGGTGAT
GACGGCTATGAGGAAAGTCAGATTAAAGATGATCTTGATTCATCCAGCCG
ACTACTTCCTTTCACCATTGGCGACGAAGATTCGGATGATCAACCAAGAT
ACCAATGGTatatattcttcaaaatgatacACAATGTCCAAATCTGTTTC
ATCCTTTTCTTATCCCTTTTTTTCATGTATTGTATGGTTTTGTTTGATTT
ATGGTTACCAATGACTGCAACCGAATATCTCCAATATGGTGTCACTGAAA
TCAATTACGTCATTCTTGGATTTGGTGCATGTGCAGTTGTCCAATTGATC
GTGTTTACATTTAGACCCATTCCCCAACATTTACTGATTTATTTTGCGAT
GTTTTGTATCGTTGGAATGATGCTAGATTATGCCATCTTTGTTGTATTGC
GACATTTCCATGGCAACCATACTGTAAACATAGTATTATTGGCCATTTGG
GATTTTTTAGCAGCAAATATCATTGCGATGGAGGAAATATTTCTTATAGT
AACCCTAGCAACAAAGGTTGGATCACGTGTTCAAACTACCACAGAAAGCA
TCCGATTGGCTTGTTCAAGGACTGGGGCGATTTTAGCTCTGACGTCAGCA
GCGAGTGCTTTTAGTTGGATCACTATAACATGTTCCATTTGTATTTCTTT
ATTATTTATCTCCTTAATATTTCTAATTGTAATGCACAAACGATTGAGTG
AGGAAAGGGTTCTTGTAAGATAGGAAATACTTTTAGCTGTCTAGTATACA
ATAAATTTATA Run BLAST on NCBI transcript from alignment at sc0000099:368547..376696+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009814 ID=TCONS_00009814|Name=TCONS_00009814|organism=Clytia hemisphaerica|type=transcript|length=8150bp|location=Sequence derived from alignment at sc0000099:368547..376696+ (Clytia hemisphaerica)
TTTGCACTTGGATTTGTTTTTGGACCATTACTGAATATTCCTTTCGCAAA
TGAAAATTTCTTACTTTTTGGAATCCCGATTTCGTACGCTAACGCACCTG
GGCTGGTACTAAGTGTTATTTTCATGGTGATTCAGTTACTGGATTTTTAT
TTGGTTTCGAATTTATCATTGGAATATGATATGAAAGAATTTGGTGATGG
TGATAGTGGAAGCCAATATTCAATCATTAGTAATGATAGCAGTGGCGAAG
ATGGCGGTGTTGATGGTGGTGGTAAAAGTCAATATTCAATCATTGGTGAT
GACGGCTATGAGGAAAGTCAGATTAAAGATGATCTTGGTAAGTTTCATTC
ATTCAATTTTGATCGTATGCTTGCTATTACCTTGTAGGAATCATTGATAT
ACACCCTTTATGTCTTTAAACTTTCCACGCTTTTCTACTTTAAGAGTTat
tatcaagaaaaaaaacaactacTGCATTCTCTTAAGTACTCTGAGTTTCA
TGTCTTTGCACGACAATCATCAGGTCCTAATAGAAAAACTTTCGTAAGTG
TcgttttcattgtattttctaTAATTTCAGATTCATCCAGCCGACTACTT
CCTTTCACCATTGGCGACGAAGATTCGGATGATCAACCAAGACACCAATG
GTatatattcttcaaaatgatacACAATGTCCAAATCTGTTTCATCCTTT
TCTTATCCCTTCTTTTCATGTATTGTATGGTTTTGTTTGATTTATGGTTA
CCAATGACTGCAACCGAATATCTCCAATATGGTGTCACTGAAATCAATTA
CGTCATTCTTGGATTTGGTGCATGTGCAGTTGTCCAATTGATCGTGTTTA
CATTTAGACCCATTCCCCAACATTTACTGATTTATTTTGCGATGTTTTGT
ATCGTTGGAATGATGCTAGATTATGCCATCTTTGTTGTATTGCGACATTT
CCATGGCAACCATACTGTAAACATAGTATTATTGGCCATTTGGGATTTTT
TAGCAGCAAATATCATTGCGATGGAGGAAATATTTCTTATAGTAACCCTA
GCAACAAAGGTTGGATCACGTGTTCAAACTACCACAGAAAGCATCCGATT
GGCTTGTTCAAGGACTGGGGCGATTTTAGCTCTGACGTCAGCAGCGAGTG
CTTTTAGTTGGATCACAATAACATGTTCCATTTGTATTTCTTTATTATTT
ATCTCCTTAATATTTCTAATTGTAATGCACAAAAGGTTGAGTGAGGAAAG
GGTTCTTGTAAGATAGGAAATACTCTTAGATGCATATTCAACATATATTC
ATTCATTCAAGGGGTTGAAAAATTCTCGAATTCTAATGAACGATAGGGCT
TAATTGCTGTTGGAGTTCGAAATTATAATTCTCCATACCCCAAAATCAAG
TTTAAGATAAAGCTTttcagtttttggacctaccccggtggggtggaggt
catataaattcacctctgtccgtccgtccgttcgttaccagcttttctcg
agattgaatcataggaatcatttgatttttggtaaaaaggtgcaaaatgg
tagtagccaaaatgtgacggatcccgattttcgaaaaaaaaaatttttgg
gcatatttgggccaaaaaacggctaaaaaacgggatttttggactttgtg
aaaaattggatcattaattttttctgattttttgcatgaaagtagggtac
cNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNcataggtaaaagatggctcaagcagatttttgcaaaaaaatttattt
ggcttaaaaaacgcatgtttatctataagaatcactattgataagcatac
atgttcttagtcaaattactcaattttttatgagatagatgtttgttttg
ctcacgtgggcttacttttgaagcatatgtgtgtttagacatgaaatttt
ggttgcttggcgtgtttttatagaaaaactggccaaattcgatatttttt
ataagtacattatcaattactaaggtattagcttttctcgagattggctc
tttcattctttaagactttttgcacaaagatgcataactataaaccctcg
aatgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNcggctaaaaaagggttttttggactttgtgaa
atattggatcgttgtttttttctgattttttgcatgaaagtaggtaaaag
atgggtcaagcagatttttggaaaataacttttcagctcaaaaaaggcat
gtttatctataggaatcactattaataagaatacatcaatgttcttagcc
aaattactcaattttttgatgagatagatgtctttttatgctcacgaagt
cttgaatataaaagaatatttcaagagcatgaaattttcgtttctaaacg
tttttcttataagaaacaaacgactaattttaaaagatcgtcactatttg
tgttctgaacgATTGTTAAATAACGTTCATgttcacgtagatatcaatta
tatatgtgttaaatgcataaccaggtaggttcataaaagtatcacttgtt
cctTTAGCAGCAGTAAATATTTTCAGAAACTAATATACTGTATTAGGATC
CTGATAAGATCCGGAGGGGGGGGTGTTTGAATAATCGTTCACAACAAACA
GGAAACCCATCTTGATAAGGCACCTGCTGAGAATAAACCCTTTGGGATAT
TACAATGTATtagtaggggccactatgtcgcgaaaaagcttcccgtgtgg
agcagcttgtgcaaaggatTTTATgcttgaatattgttccttgaatgtaa
aagatcaaaatttgagaggtggggccggctgtgaccacccgttgccatgg
aaactgacgtcattggttactatggcaactaaaataaaaagtcgtcaaaa
ttgaaaaaaatttgtttcattcaaagaaaaaaagagcatgaaatactgat
aaagaaaaaggtcacaacctatatctgaaaatgaatatatcaggagatat
taaggaaataaggcaaaatgacgtcataaaacNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNGGAAAGAATACCTtccagtgaacaaaaaat
attattacgaaaaagtctgaaaatcctttttaagaagtctatgagcaaaa
attgatatttttaaattttgcaataaattcAAACTAAATTGCTTAGTGTT
CTATTGTAATTCctcaattcaattttcaataaaatcgaAGGGAGATAAAC
ATCAGGCCCGGCGATACCGGGAGACCTTTTGagtaaatgagattttttct
aaaatttctagcgaattttatctcattttgaggcTTTAGCCTCCCCatcc
acttttacggttgttccgccggacCTGAACATAACATAAAACTCTCAAGC
TACAAGTTGTTAATTGCACTTTggaatttttaatttcaaaaaactgcGCA
CCAAAGTCAAAAAGGTTTAATAAGAAGTGGATGAATGCATCAAAGAGTGC
TTAATGAATGCTACGTTTTTTTCAGTTCAATTTGTTTTCTTGCACAGgtt
tagaatttttaaacatAGTCAATTATTCTGGATTGAATATGAAAAAAACG
GAGAATGCTTTACAACCAACTAGAAAAGCTTTCAAATTATGTgcggtttt
tttttcattattaagATGCATTTTTTAATACGGAAGTAAgcaattatttt
ttgatttgagtAATAAATATAAGCTTAGCGAGACTGAACATTTCCGTCAT
GAAACTGATAGAGATATGATTCTAATGTCATCTGACatggggatatagct
cagtggtagagcattcgactgcagatcgagaggtcccCGGTTCAAACCCG
GGTGTCCCctaagttttaaatttttttgacttagTTCATCATATTTCAGA
GCTTCGTGGTATTTAGACTAGAGTCTGAACTTTGCATTGTCGAGTGAAGA
GACTACCTTAAAGTACGAAGTGAGGGTACCAAATTTGCGTTTTTatgcgg
aactaattttggcgataGACAaccaaaaacgcgaaaattagttactgcca
aaattagttcccttatgGCAGGAGTACTTCGTcgtaaatttggaaaaaaa
ttaccataattatcaaaaataatctGACatggggatatagctcagtggta
gagcattcgactatGAAAAATCTCTatgaaattttataagaatccgCGCA
AAACTTACGTTCCTTTCGAATAGATACCCAATAAATATAATAATTCGcga
aaattcagaaaatctcTATGAAATTCTATAAAAATCCGCGCAACACTTAC
GTTCCTTTCGAATAGATACCCAATAAATATAATAATGAAATATTGAATAC
ATGCCCTATCCACTAaagtataaatttctcaaatggacttttccagaaag
aattttacccccactgttgaggatatttttcgaagtatcgaacccctgga
tatcctactttattagtaaagaccctgGGTATCCACTCTTAATTATATgt
tcaaccccctggatatcctctcttataaagatgcttacccctggatatcg
tattttttacttgaaaagacactgtAACCCCTGTATATCCGCTCCCTTAA
AGATATTTAGCCCcttggatatccacttttgaacaaaaatcgttaacccc
ctggaaaataaccaaaataataataagcattattgccaaaagtttcaaga
taGATTGGTGATCATCAATGGCAAAAAACTtttgcgaaaaattatttttg
gcggTTTACCTGAGGGTCAATAGGGAAAATATGGGTATTTTCAAtgaatt
ttgacactttataagactggaaaagtgcttatttaaggagatataggatt
tggctcccggactagcAGTGAAGAGGTCTATCGGGATcgattttctttat
aaacagaAGTTTTTACGCTCCCACGAGGGACTTGAAATTACTCTTTTGGC
TGTATCTCGATTTTTAACAATGACTTTTCGTGCAACCTCTATGGAATTGA
GTGTCATCTGTTATgttgttaatatttttacaaatccTCGAGAGAATTGA
AGACAGTTTTTAACTGTTTCATGTCGTTGACGCAATCTCTAGATAGCAGA
ACTCACTTTTTAATGATACTTGGCTTCAGTTCGTGCGTGAGTCGAATTAG
TTGAAAATAGTGAAGCTCGAAGAAAGTGATCAAACGTTTTTGTTGAGAGG
GATGCTAAATAGTTTTGGTCAGTTGAACTTCTAAATATCAATTTCCGATT
GTCACATGAACTATGTAATGCTGAATATCGGTGAAAGCTAATTTTGATCA
GCTCAATATACATTAGACTCCAGAATTGTCTCAGAAAGGAGTCTAGACAA
AATTAGCCTGCGCTAGGCATACAATCTTGGAACGCTGATAATActctaaa
aataaataatcttGGCATTGTTACTAcgatttaaatcaatttttgaaatg
gtATTAATGGATGGCAAAAACCATGAAAGTTGGCTTCAAAAACGTCGGAA
AACATTCGTCGCATATTTGATCGAGACATGCGCACTGGGAATGGAATATT
CGTTGACTTTCATAACACTTTGGATGTACCTGAAAGATGTAATACAAACA
GatgatttgaatttattttacaGTTCGATCTCGGTTATCTATCTCATATC
ACAGGTAAAGATTTCTTCCTATATTTTCCAATATAGCCTATCATTCCtgg
ggggatacttaggcaaaaatgggtgtttTTGCTATGTGTGTGCCTTATTA
AGgctcgggtttttcaccttccaaagtctctctaagccTAAGGGTTTCAA
AAATCAGATAAATTTAAATTGGTCTCTTCTAAGGGTCtgttttttttcac
aaactcgaGTGAAAGAAAGAGTGACGTCcactttttcagcaaaaatcagc
cTCTATAAaggtcggtctccacttgcgcgcactGTGATCGCACACgcttc
aacttttttcaaccgttacgttagatcgcgccaatggagttgcttcattt
tcctttttaccACAATAGTGTgaaagctttgctcgaaaaaggtacgatcg
aagcgcgcgcaagtggagaccggccctAAGAGTAATGTTTGGAGGTCAAG
CACGCACATACCTAGCATCTTTCAATTCAGGCTATCATTTGGTGAGTCAA
GTTGATTCTTTACGATATCATTATTCGAATTGTTGAATTCTCTTATAGGT
TGCAATGTCGGTGTTATTCGGTGCTTTATTCGACCATCATCGAAACGCCC
GCCTCATGATCCTTATTGGAAACTTGTGTATCATCTCAGGTAACATTCTC
TACACTATACCCTACTCTCCGTGGTATTTGTTCACTGGGCGTCTCATCTC
TGGCGGTGGTGGGTGTCTTCGCTCTATCATGACGGCCGAAATTGTCCGCG
CTTATCCCAAATCGGAATTAAGTGGGAAATTTTCATCAATCGGGCTTTCA
TTTGCACTTGGATTCGTTTTCGGACCATTATTGAATATTCCTTTTGCAAA
TGAAAATTTCTCGCTTTTTGGATTCCCGATTTCGTACGCTAACGCACCTG
GGCTGGTACTAAGTGTTATTTTCATGGTGATTCAATTACTGGATTTTTAT
TTGGTTTCGAATTTATCATTGGAATATGATATGAAAGAATTTGGTGATGG
TGATAGTGGAAGCCAATATTCAATCATTGGTAATGATGGCGGTGGCGATG
GTGGTGGTGTTGATGGTGGTGGTGAAAGTCAATATTCAATCATTGGTGAT
GACGGTTATGAGAAAAGTCAGATTAAAGATGATCTTGGTAAGTTTcattc
tttcaattttgatcGTATGCTATTACCTTGTAGGAATCATTGATATACAC
CCTTTATGTCTTTAAACTTTCCACGCTTTTCTACTTTAAGAGTTattatc
aagaaaaaaaacaactacTGCATTCTCTTAAGTACTCTGAGTTTCATGTC
TTTGCGCGACAATCATCAGGTTCTAATAGAAAAACTTTCGTAAGTGTcgt
tttcattgtattttctaTAATTTCAGATTCATCCAGCCGACTACTTCCTT
TCACCATTGGCGACGAAGATTCGGATGATCAACCAAGATACCAATGGTat
atattcttcaaaatgatacACAATGTCCAAATCTGTTTCATCCTTTTCTT
ATCCCTTTTTTTCATGTATTGTATGGTTTTGTTTGATTTATGGTTACCAA
TGACTGCAACCGAATATCTCCAATATGGTGTCACTGAAATCAATTACGTC
ATTCTTGGATTTGGTGCATGTGCAGTTGTCCAATTGATCGTGTTTACATT
TAGACCCATTCCCCAACATTTACTGATTTATTTTGCGATGTTTTGTATCG
TTGGAATGATGCTAGATTATGCCATCTTTGTTGTATTGCGACATTTCCAT
GGCAACCATACTGTAAACATAGTATTATTGGCCATTTGGGATTTTTTAGC
AGCAAATATCATTGCGATGGAGGAAATATTTCTTATAGTAACCCTAGCAA
CAAAGGTTGGATCACGTGTTCAAACTACCACAGAAAGCATCCGATTGGCT
TGTTCAAGGACTGGGGCGATTTTAGCTCTGACGTCAGCAGCGAGTGCTTT
TAGTTGGATCACTATAACATGTTCCATTTGTATTTCTTTATTATTTATCT
CCTTAATATTTCTAATTGTAATGCACAAACGATTGAGTGAGGAAAGGGTT
CTTGTAAGATAGGAAATACTTTTAGCTGTCTAGTATACAATAAATTTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009814-exon-sc0000099-1491911889:368547..368883 | TCONS_00009814-exon-sc0000099-1491911889:368547..368883 | Clytia hemisphaerica | exon |
| TCONS_00009814-exon-sc0000099-1510915933:368547..368883 | TCONS_00009814-exon-sc0000099-1510915933:368547..368883 | Clytia hemisphaerica | exon |
| TCONS_00009814-exon-sc0000099-1575043694:368547..368883 | TCONS_00009814-exon-sc0000099-1575043694:368547..368883 | Clytia hemisphaerica | exon |
| TCONS_00009814-exon-sc0000099-1491911889:375973..376696 | TCONS_00009814-exon-sc0000099-1491911889:375973..376696 | Clytia hemisphaerica | exon |
| TCONS_00009814-exon-sc0000099-1510915933:375973..376696 | TCONS_00009814-exon-sc0000099-1510915933:375973..376696 | Clytia hemisphaerica | exon |
| TCONS_00009814-exon-sc0000099-1575043694:375973..376696 | TCONS_00009814-exon-sc0000099-1575043694:375973..376696 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000099 | supercontig | sc0000099:368547..376696 + |
Blast
The following BLAST results are available for this feature:
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