TCONS_00009807 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009807
Unique NameTCONS_00009807
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length353

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009807 ID=TCONS_00009807|Name=TCONS_00009807|organism=Clytia hemisphaerica|type=transcript|length=353bp
TTTGGAATGAAGCGGCTTGGACACCGTATTCATTTTGAGCACGTTCTTTG
CATTCATGGAGTTTCTTGGTTTCGGTGAATGTGTTGTCAGGTTCCTTTTT
GATGGTTGATGAACAGATTCCGTTGACGTCTTTCTCGGTGGTTTGGTCTT
GATCAAATTGCAAGATGCTTAAGATACCTCTCTTGATGTTGAGAATGTTG
GTAGGTTCGTTGTCATGGGCAACCAAAGTTTCGATCTTGTTACCGTTCAT
GGTGAAAAGTAACTCGTATTTTTGGAGATCACCAGCAAGGAGATTGGAAT
CTCGACTCTTGGTGAAGTCTTGGTTCTTGCTCTTTAATGAGAGCTCAGTG
TTG
Run BLAST on NCBI

transcript from alignment at sc0000099:269691..270300+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009807 ID=TCONS_00009807|Name=TCONS_00009807|organism=Clytia hemisphaerica|type=transcript|length=610bp|location=Sequence derived from alignment at sc0000099:269691..270300+ (Clytia hemisphaerica)
TTTGGAATGAAGCGGCTTGGACACCGTATTCATTTTGAGCACGTTCTTTG
CATTCATGGAGTTTCTTGGTTTCGGTGAATGTGTTGTCAGGTTCCTTTTT
GATGGTTGATGAACAGATTCCGTTGACGTCTTTCTCGGTGGTTTGGTCTT
GATCAAATTGCAAGATGCTTAAGATACCTAGGAGGAAGAAAAGAAGAGAT
TCAATAGTTAACAAATTGATAAAATTCGTATCTTAGTTCAGGTTTGGCTA
AGGGGCTTTTCTAAGATTTTTTCCATGATTTAGAATATTTCCTTTGACAC
TGTGATGACAATAACGAGTGACGTCGCAATTCTGAGTTAGGATATATGAA
ATTTAAGTGATATTGTAGTAATATCAGGCGACCAATCGCTAGACTGGAAC
AAAAATCGATGTAAATGATTTGCCACACACATACCTCTCTTGATGTTGAG
AATGTTGGTAGGTTCGTTGTCATGGGCAACCAAAGTTTCGATCTTGTTAC
CGTTCATGGTGAAAAGTAACTCGTATTTTTGGAGATCACCAGCAAGGAGA
TTGGAATCTCGACTCTTGGTGAAGTCTTGGTTCTTGCTCTTTAATGAGAG
CTCAGTGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005489XLOC_005489Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009807-exon-sc0000099-1491911889:269691..269863TCONS_00009807-exon-sc0000099-1491911889:269691..269863Clytia hemisphaericaexon
TCONS_00009807-exon-sc0000099-1510915933:269691..269863TCONS_00009807-exon-sc0000099-1510915933:269691..269863Clytia hemisphaericaexon
TCONS_00009807-exon-sc0000099-1575043694:269691..269863TCONS_00009807-exon-sc0000099-1575043694:269691..269863Clytia hemisphaericaexon
TCONS_00009807-exon-sc0000099-1491911889:270121..270300TCONS_00009807-exon-sc0000099-1491911889:270121..270300Clytia hemisphaericaexon
TCONS_00009807-exon-sc0000099-1510915933:270121..270300TCONS_00009807-exon-sc0000099-1510915933:270121..270300Clytia hemisphaericaexon
TCONS_00009807-exon-sc0000099-1575043694:270121..270300TCONS_00009807-exon-sc0000099-1575043694:270121..270300Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000099supercontigsc0000099:269691..270300 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.139478	0	0	0.131273	0.432005	1.22737	0.361869	1.76178	7.40683	2.84611	6.4318	7.18885	3.53419	6.51357	6.77269	11.7099	9.32043	13.2625	23.7259	20.7067	4.05288	11.2785	123.311	90.3243	63.697	51.4274	29.5624	34.3085
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015816Vitellinogen_b-sht_N
IPR001747Lipid_transpt_N
IPR015819Lipid_transp_b-sht_shell
Vocabulary: Molecular Function
TermDefinition
GO:0005319lipid transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0006869lipid transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006869 lipid transport
molecular_function GO:0005319 lipid transporter activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009807 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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