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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009792 ID=TCONS_00009792|Name=TCONS_00009792|organism=Clytia hemisphaerica|type=transcript|length=2960bpRun BLAST on NCBI protein sequence of TCONS_00009792-protein >TCONS_00009792-protein ID=TCONS_00009792-protein|Name=TCONS_00009792-protein|organism=Clytia hemisphaerica|type=polypeptide|length=359bp MNLTIAWWTGKRIGVLLARPSVLSMKNQYVCKRNQSTMLAEVGRFETPKVRun BLAST on NCBI transcript from alignment at sc0000099:53393..63282+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009792 ID=TCONS_00009792|Name=TCONS_00009792|organism=Clytia hemisphaerica|type=transcript|length=9890bp|location=Sequence derived from alignment at sc0000099:53393..63282+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000099:53393..63282+ >TCONS_00009792 ID=TCONS_00009792|Name=TCONS_00009792|organism=Clytia hemisphaerica|type=CDS|length=10800bp|location=Sequence derived from alignment at sc0000099:53393..63282+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009792 vs. Swiss-Prot (Human)
Match: PDIP2 (Polymerase delta-interacting protein 2 OS=Homo sapiens GN=POLDIP2 PE=1 SV=1) HSP 1 Score: 380.178 bits (975), Expect = 5.213e-122 Identity = 190/339 (56.05%), Postives = 237/339 (69.91%), Query Frame = 3
Query: 150 PSVLSMKNQYVCKRN--QSTMLAEVGRFETPKVQGKYEAGQLFLHRVFGYRGVILYPWIAKFYDLDSITDGKDKPILEETPQNEKKNTKETAMKPSSSTYYQVLIDERDYPHIWTTFPSYNFRFYHPQRAQSEAVTFLGNPEDT-TLYAVPGLDYVNHTDILPYISSSEQPIEHDLFKKFLLPNQDQVPAFTASPSLRTWHQKNHKWLELSEVIRETTDNIRVTAIPFYMGSRMVHGAKSYWWRYSIRLENMGMESVQLKERHWRIFCLSGVLDSVKGRGVVGQEPVLSTRQPAFQYSSHVTLPSPSGHMWGTYRLERPDGRVFDVRIPSFPLESKEDD 1157
P+ + +++ RN + +L VG FE PK GKYE GQLFLH +FGYRGV+L+PW A+ YD D + +K E P +KE +K + TYYQVLID RD PHI QR+Q+EAVTFL N +D+ LYA+PGLDYV+H DILPY S+ + PI+H+LF++FLL +Q + P F A +LR W +KNH WLELS+V RETT+NIRVT IPFYMG R + YWWRY IRLEN+ + VQL+ERHWRIF LSG L++V+GRGVVG+EPVLS QPAFQYSSHV+L + SGHMWGT+R ERPDG FDVRIP F LES +D+
Sbjct: 41 PASTTTTRRHLSSRNRPEGKVLETVGVFEVPKQNGKYETGQLFLHSIFGYRGVVLFPWQARLYDRDVASAAPEK---AENPAGH--GSKE--VKGKTHTYYQVLIDARDCPHI-------------SQRSQTEAVTFLANHDDSRALYAIPGLDYVSHEDILPYTSTDQVPIQHELFERFLLYDQTKAPPFVARETLRAWQEKNHPWLELSDVHRETTENIRVTVIPFYMGMREAQNSHVYWWRYCIRLENLDSDVVQLRERHWRIFSLSGTLETVRGRGVVGREPVLSKEQPAFQYSSHVSLQASSGHMWGTFRFERPDGSHFDVRIPPFSLESNKDE 359 The following BLAST results are available for this feature:
BLAST of TCONS_00009792 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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