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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009735 ID=TCONS_00009735|Name=TCONS_00009735|organism=Clytia hemisphaerica|type=transcript|length=1921bpRun BLAST on NCBI protein sequence of TCONS_00009735-protein >TCONS_00009735-protein ID=TCONS_00009735-protein|Name=TCONS_00009735-protein|organism=Clytia hemisphaerica|type=polypeptide|length=515bp MADKAQLEVEKKAKAAAKAERKKQYEAQQAEKAKQQGGDAAGKKSKAELKRun BLAST on NCBI transcript from alignment at sc0000098:360339..373581- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009735 ID=TCONS_00009735|Name=TCONS_00009735|organism=Clytia hemisphaerica|type=transcript|length=13243bp|location=Sequence derived from alignment at sc0000098:360339..373581- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000098:360339..373581- >TCONS_00009735 ID=TCONS_00009735|Name=TCONS_00009735|organism=Clytia hemisphaerica|type=CDS|length=17028bp|location=Sequence derived from alignment at sc0000098:360339..373581- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009735 vs. Swiss-Prot (Human)
Match: EI2BD (Translation initiation factor eIF-2B subunit delta OS=Homo sapiens GN=EIF2B4 PE=1 SV=2) HSP 1 Score: 424.476 bits (1090), Expect = 1.019e-140 Identity = 201/369 (54.47%), Postives = 272/369 (73.71%), Query Frame = 1
Query: 445 KKITKTLAKQNVPQRSAAQKKVQMFAHLHQYEKDRSLTKNLSFSSCSIHPAIIKLGLQFAEGIITGSNARCISMLCALKMVIKDYSTPPQKELSRDLESKIKPCISFLTQCRNLSQSMGNAIKYLKHQITNLSPELPEAKAKEHLLESIDSFIQERIILADQQITNFAVQKIHDGNKILIYGFSSLIINILKDAKESGKEFEVVVVDCRPDFPGRETLKRLEDAEIKCSYTLLNNISYIIKEVTTVFLGTHALLANGNVMAKAGTSMVAMVAKSNNVPVLVCCETYKFCERAQSDSFVFNELGDPDDLVSLHRPHSQDILTNWRDIKSLYLLNLVYDVTPSSFVDMVVTEIGMIPCTSVPVVLRVKNTN 1551
+++ K +Q VP R KV +F+HL QY + SLT+ +S S IHPA+++LGLQ+++G+++GSNARCI++L AL+ VI+DY+TPP +ELSRDL +K+KP +SFLTQCR LS SM NAIK+L +IT++ E +AK L +ID ++QE+I+LA Q I+ FA QKI +G+ IL+YG SSL+ IL++A G+ F VVVVD RP GR TL+ L A + SY L+ SY++ EV+ V LG HALLANG+VM++ GT+ +A+VA+++NVPVLVCCETYKFCER Q+D+FV NEL DPDDL H L NW++ SL LLNLVYDVTP VD+V+TE+GMIPC+SVPVVLRVK+++
Sbjct: 156 RRLVKKPERQQVPTRKDYGSKVSLFSHLPQYSRQNSLTQFMSIPSSVIHPAMVRLGLQYSQGLVSGSNARCIALLRALQQVIQDYTTPPNEELSRDLVNKLKPYMSFLTQCRPLSASMHNAIKFLNKEITSVGSSKREEEAKSELRAAIDRYVQEKIVLAAQAISRFAYQKISNGDVILVYGCSSLVSRILQEAWTEGRRFRVVVVDSRPWLEGRHTLRSLVHAGVPASYLLIPAASYVLPEVSKVLLGAHALLANGSVMSRVGTAQLALVARAHNVPVLVCCETYKFCERVQTDAFVSNELDDPDDLQCKRGEHV--ALANWQNHASLRLLNLVYDVTPPELVDLVITELGMIPCSSVPVVLRVKSSD 522 The following BLAST results are available for this feature:
BLAST of TCONS_00009735 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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