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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009695 ID=TCONS_00009695|Name=TCONS_00009695|organism=Clytia hemisphaerica|type=transcript|length=1358bp TTTCACATTGTTGAATGGCTCTTCAATAAGTACAAGAAAAATCGCCCGCG CGCACGAACAGAAAAACGCCCATCGTTACGTCCAAGAGCAACCGATTTGA GACGATCGTTAAGCTTTTCAGACCTTTTAGATGTGCCTGCTACAAATACA GAGCATTCGCCACGAAATTCTGGTTACTTTGAATCAAATCACTATGGTTT GCTCACGTTCGACCACGATATGAAACCAACAAACTCCATAGTGAAAGCAG AAATCCCCATATTGAAACCAGCAAACCCCATAGTGAAAGCAGAAATCTCC ACCGcggaaaatcttatttttgagGGAGAGGGAACTCAGACAGTTGATGA AATTGATTGTAAACAGTCAAATAACTTTCacacaaattctgaaaattata TGGTTGACTCTTCAATCTCATATGGTGATTCAAATCCCTTGGCTATTTCA CCAATTCCCAATGGGGAATCTACTCCTGGATATGATAGGACAATTTCAGA GGTAGAAACATACGGAAGCGAAGAGAATTTTACCGAGCTGATTTTCCCAT CTAAGATAGACGCGAACAACAACGAGGAAACTCTTTTCACAANTTTCAGA GGTAGAAACATACGGAAGCGAAGAGAATTTTACCGAGCTGATTTTCCCAT CTAAGATAGACGCGAACAACAACGTGGAAACTCTTTTCACAATGGGAAAC GAAGAAAATCACAATGAGGAATTAGACGAATTCCCTAATTATAACTCCCT TAATTTCAAACGAGAAAGTCAACTATCTGATGATATATTTTATGATAACT CCATAACAATTGATTACCATGGGGATGCATCAGATCACACTAATGATAAA GAAGTAGCAAGACTGAGGAAAAAGAGTAGCCACCAGTATGGGAAATACAG CAATCACAGCTTGAGTTACGACCCAGCTAGTGAAAAAGAATcagaaaaag aaaggaaaagaagCAGCCATGAGTATGGAAATTACGATAACCATCAGTTA GCTTGTGATTCCACAGAGGTGAAACCTGATTCTCCTAAGGAAAAGCACGt agaaaaacaaaggaaaagaaGCAATCATGAGTACGGAAATTATGATAACC ATCAGTTAGCTTGTGATTCCACAGGAGGAAAACCTGATTCCCCTAAGGAA AAGCACGCAGAAAGACAAAGGAAAAGAAGCAGCCACCAATATGGGAAATA CGACAATCACCGTTTGAGTTTCACTTCCCATGGGGAAACATCTGATACCC TTAGTGAAAAGGAGATTGCTAGACAGAGGAAAAGAAGTAATCACCAATAT GGGAAATATGATAATCACCGTTTAAGTTATCGAAGTAGAAGTTCAACCGA ATATTATG Run BLAST on NCBI transcript from alignment at sc0000098:92454..95319+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009695 ID=TCONS_00009695|Name=TCONS_00009695|organism=Clytia hemisphaerica|type=transcript|length=2866bp|location=Sequence derived from alignment at sc0000098:92454..95319+ (Clytia hemisphaerica) TTTCACATTGTTGAATGGCTCTTCAATAAGTGAGTATAAATTTCTTTGCA
TACGAGATTTTATCAcccgatttttttttgcttcctGTCTCGTTTAGTTA
TTGATTTTCGGgctcaatttttttccagggcGGGCAGTTGGTCTGCGACT
GCAGTCGGTGGCGACCCGAAggttcctctttcgatagctaccTACCCgag
aaggtaggggagggcacctctctttctccctggattactccacttaccct
tgatccttctcttaattgctgatcatcaagcagagaggcaccaagtacca
ttttgggaatctttggtatgacccggctgggggttgaacccacaacgtGG
TGCACCGTACCCGGATAttctaccactgcactatggTCGTTTTTAAGTGT
CTGAAGTAATTAGTAAGGCAAGATTTACAATGGTCGGTTTTCCCAGAACT
CGAACCCTCTACTCTCAAGTCAGAAGACGATAATCTGAATCACAGAGCAC
CAGAaagatttttcatgttttgacgGAAGGCGGAAGGGAGAATAAGTCAA
CCAATTTCAATCGAATTTCTTCTTCCGTAATAGTGGATTCCCTGATTCCG
GCAAAACGTGAAAAACCTCCACTATCTGTTAGCATGCCAGCAACCTAAAG
AGGCGACAGCTCGGTAGAGCAGCAATATATTTCTTTCGCAACAAAGTTTG
CTAAGAGCATGGTCTGTTGACTTTCAAACTTACTTCACATTTATTTCTCA
CTACAGGTACAAGAAAAATCGCCCGCGCGCACGAACAGAAAAACGCCCAT
CGTTACGTCCAAGAGCAACCGATTTGAGACGATCGTTAAGCTTTTCAGAC
CTTTTAGATGTGCCTGCTACAAATACAGGTAGATATTCACAGTTGGGACT
TTTTTATAGGGAATAAGGATAATACCTTTTCTTTCGACCGTGAAAAACTA
TGAATTATAAGTACTCTGCAAATTAACTCCGGTggtaaaaatgcaaaata
tgCTTGTTAGGTCAATCGAAGTTATGGCGCAGTAGTGTCGTGGTTATCAG
CCTTGACTTCCGTGCAGGAGGTCGGGTTTCAATTCCTACTCGGTGCTGTG
ATTCACTTgacaagtgaatgtaccttcgtGAGTGGAATTGGGTACCACGC
CCTAATACAAGAGTGTGGGACATATGCTTGTGATAggcattttcataaat
tattgtCAGTGCAACAACTGCCTCGTTCTGTAACCATTGCCAATGTGATT
AAGTCTTCAAGTTTTGCTTTGATGAATAGAGTAAACTTCTTATGAACTCT
TTTGGAAAttaattaccatagcaatattttgaaaacgaggtaagcattgc
tcgtgacgtaatttatgaaaaggtctattgcaaaTACTTGTTAGGTTCGA
CCATGCGAGGATGCAATTCCCAAATCATTTGAGTATAGTTACTATACTCT
AAAACTTGTGTATTTCGAAACCACGAGTTTAATTTACCCTATCCTAGGAT
AGTGGTTTTTGTCCTGGATACGGCCTTTTCCGTCCCCCAGAAGGACTTTC
TCTCCAATCTCTGCGTATATTATTTATTTCGCTTTTCGGTTCCTTTACTT
TGGTGTGTGTTTCTTGATATCGAATATTTCAActcttgtatcaaccatta
tGTTTTCAGAGCATTCGCCACGAAATTCTGGTTACTTTGAATCAAATCAC
TATGGTTTGCTCACGTTCGACCACGATATGAAACCAACAAACTCCATAGT
GAAAGCAGAAATCCCCATATTGAAACCAGCAAACCCCATAGTGAAAGCAG
AAATCTCCACCGcggaaaatcttatttttgagGGAGAGGGAACTCAGACA
GTTGATGAAATTGATTGTAAACAGTCAAATAACTTTCacacaaattctga
aaattataTGGTTGACTCTTCAATCTCATATGGTGATTCAAATCCCTTGG
CTATTTCACCAATTCCCAATGGGGAATCTACTCCTGGATATGATAGGACA
ATTTCAGAGGTAGAAACATACGGAAGCGAAGAGAATTTTACCGAGCTGAT
TTTCCCATCTAAGATAGACGCGAACAACAACGAGGAAACTCTTTTCACAA
NTTTCAGAGGTAGAAACATACGGAAGCGAAGAGAATTTTACCGAGCTGAT
TTTCCCATCTAAGATAGACGCGAACAACAACGTGGAAACTCTTTTCACAA
TGGGAAACGAAGAAAATCACAATGAGGAATTAGACGAATTCCCTAATTAT
AACTCCCTTAATTTCAAACGAGAAAGTCAACTATCTGATGATATATTTTA
TGATAACTCCATAACAATTGATTACCATGGGGATGCATCAGATCACACTA
ATGATAAAGAAGTAGCAAGACTGAGGAAAAAGAGTAGCCACCAGTATGGG
AAATACAGCAATCACAGCTTGAGTTACGACCCAGCTAGTGAAAAAGAATc
agaaaaagaaaggaaaagaagCAGCCATGAGTATGGAAATTACGATAACC
ATCAGTTAGCTTGTGATTCCACAGAGGTGAAACCTGATTCTCCTAAGGAA
AAGCACGtagaaaaacaaaggaaaagaaGCAATCATGAGTACGGAAATTA
TGATAACCATCAGTTAGCTTGTGATTCCACAGGAGGAAAACCTGATTCCC
CTAAGGAAAAGCACGCAGAAAGACAAAGGAAAAGAAGCAGCCACCAATAT
GGGAAATACGACAATCACCGTTTGAGTTTCACTTCCCATGGGGAAACATC
TGATACCCTTAGTGAAAAGGAGATTGCTAGACAGAGGAAAAGAAGTAATC
ACCAATATGGGAAATATGATAATCACCGTTTAAGTTATCGAAGTAGAAGT
TCAACCGAATATTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00009695-exon-sc0000098-1491911889:92454..92482 | TCONS_00009695-exon-sc0000098-1491911889:92454..92482 | Clytia hemisphaerica | exon |
TCONS_00009695-exon-sc0000098-1510915933:92454..92482 | TCONS_00009695-exon-sc0000098-1510915933:92454..92482 | Clytia hemisphaerica | exon |
TCONS_00009695-exon-sc0000098-1575043694:92454..92482 | TCONS_00009695-exon-sc0000098-1575043694:92454..92482 | Clytia hemisphaerica | exon |
TCONS_00009695-exon-sc0000098-1491911889:93210..93331 | TCONS_00009695-exon-sc0000098-1491911889:93210..93331 | Clytia hemisphaerica | exon |
TCONS_00009695-exon-sc0000098-1510915933:93210..93331 | TCONS_00009695-exon-sc0000098-1510915933:93210..93331 | Clytia hemisphaerica | exon |
TCONS_00009695-exon-sc0000098-1575043694:93210..93331 | TCONS_00009695-exon-sc0000098-1575043694:93210..93331 | Clytia hemisphaerica | exon |
TCONS_00009695-exon-sc0000098-1491911889:94113..95319 | TCONS_00009695-exon-sc0000098-1491911889:94113..95319 | Clytia hemisphaerica | exon |
TCONS_00009695-exon-sc0000098-1510915933:94113..95319 | TCONS_00009695-exon-sc0000098-1510915933:94113..95319 | Clytia hemisphaerica | exon |
TCONS_00009695-exon-sc0000098-1575043694:94113..95319 | TCONS_00009695-exon-sc0000098-1575043694:94113..95319 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000098 | supercontig | sc0000098:92454..95319 + |
Blast
The following BLAST results are available for this feature:
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