TCONS_00009689 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009689
Unique NameTCONS_00009689
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4074

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009689 ID=TCONS_00009689|Name=TCONS_00009689|organism=Clytia hemisphaerica|type=transcript|length=4074bp
caaaaagttgaaattttcctatttttccaattctgactgaagtttgattt
tctgatttttcaaactatcatgtttcaaaaaaggcacctttaaggctggc
acatacccatacccatacccttctcttgcctaagtaccccctcccccggg
ctgcctttttttcgacgaatcgtgtgtcatgtctattatttcactccgct
tatcttgacatcgcaaagttttcctaaacatcaagaactacggcaaatat
aacgcaagcaaagcgagaaaaaaaatctaattgcagagccgtctcggaca
tcgctggtcgccggtatggtgtaatttgggaatgccgccctttctgtttt
ctgatcatttttgccacaaaaatctttttcaaagtatggttaaaagatat
gtcacccgggagggatagagtcaaactttgaagagaattgtTCAGCAAAC
AgttaaaccggcgtgcgacacCGGGATACCGGCTAGTTTCTATCTAATAT
ATTTGATATCTTTGATGGTGATTTGTTCCATAAGTCAATGGTGAACTTAT
CAAGCATATTTGTAATCGAAGTAATTGAACATGTTCGAAGATCAAtggaa
tgtaattgacaatcaattgaaccaatcaaacGTTATTCATACGCAATCAA
ACACTATTGAATATTAGGAGGAATCTGTGAtttgattgagatttgattgg
gGTAGACAATTAAATCGCAATGATATGACTGCTTTTTTAATTGACACCGT
CTCTTGATATCAGGATCTAAAATCATAGAGTCTGGTGCACCTAACAGTTT
gctacagtttgtttgatactggtCTGTTAATGAACCCTTGACAGACGCTC
AAAACTTAGGAAACCCAAGCAGACAGGTAAAAAATATGCACATGTAATTT
AACATTAAATCTAAAGactgtcaaaacaaacaacaataGAGAGCCAGCCA
AATGCAAACCACCACCCAGCAGTCAGCCATTTTGTTGTTGCAATGTTTTA
GCGTTCTTCATTCTTCACTTCTtcagaaaaaattgttttgatgaTTGTCA
TTTGCATAAATTATTTGGGCCCTATAATGTGGCTGATAAGCGTCGAAAAA
ATCTTGATAAGCAAGCAGGCTTGCATGGACCAATCACTTTTTACATCCTC
AGATTTGGATGCAGGTGATCTAGGTAAAACATACCATAAAATATACTAGa
caaaaatatgataaactAGACTGTTAAATAGTTTacagtctggatatcca
ggttaAGTCAAGACTGAGCTTGTGTCAATCAAATTCTGCTATAACCTCAA
AATTTTTCCTAGAAGGGGTGTATCCGGAAGAGCGTACGTACAAATGTTct
gactttgccccaaaaataACTGACGTCCTACCCTATCCGGATTTTTCAtg
gctttttcaatttttttcatgttttctgtAGTTTCCTAAAGAACTAAAAA
GTGACTTTTCAGGTAAACCCTTGTTATGAAAGGTATTTATCACTTAAGAA
AACCtgatacttttcaaatttttttttcacaacttATTATCAATTTGTTT
TTGTGCTAGTAAAAAAAGAATACTAAATTTTTCTGGAAAGCTCATTTACT
GGATGTCGTTTTTTGGTTTGCAAGATATGCTGAATTTCATTTGGGCAGTT
ATTCTCCTTGTTTTGTCCTATGTGGAGGCAATGTTTTGCTATTTCTTTCC
CATATCAAAGAAGGacctcactggaaaaattgttctaATTACAGGTGGTG
GTGGTGGACTTGGAAAACATCTTGCAATCTCTTTTGCTAAATGTGGAGCT
ACCATTATTTTGTGGGATATAGAAAAAGAGAGCAATGATAGGAATCGTAA
TTTGGTCAAAGCGATGAAATTCAATGCATTCTCATACCAATGTGATTGCT
CAGATCAGGAAAGTGTCgctaaaatggctgaaaaagttGAAGCGGAAATC
GGTCCTATAGATATTTTGGTCAACAATGCTGGTGTTTTGAATGGGAACAG
TATAACAGTGTTGTCAGAAAAACAAATCAGAAGTACTTTTGATGTCAATG
TTCTTGCACAGTTTTGGACAATCAAAGCATTCTTACCAGGGATGATGCAA
CGTAGTGAAGGACACATTGTAACCGTTTCATCAAGTGCTGGTCTTAACGG
AACTTCATATCTCACAGATTATTCGGCTtcaaaatttgcacttgttggTA
TACATGAATCATTAGCATTGGAATTGCGAGAACAAGGCTTTCATAACATC
CAAATGACTTGtgtttgtccaaattttattaATACTGGAATGACATGGTA
TCCTAAAACAAACGTTCCATGGTTAATTCCAATCTTGCAAGTGGAGGATG
CAGCGCAAGATATTGTAGATGCTGTACGGGAAGATCGTAATGTTGTTGTG
TTGCCAAAAGTACTTGGAAAAGTTCTCAGTCTGAAAAGATTGATACCATT
AAGAGGGCAGTTAGCTATTTATGACTATCTTGGAATCGGTATTGAACCTC
ATCTGTCACATAGAAAAAGTTCTTCAAGTTTGTCAAGAAAGAGATCACCA
AAAATGAAAAGtttTACTGCaacttgaaaagaaaagaaaaatgtgttGTG
TTTTGTATGGATattattaaaaatgaaaaatcttgaAAGACAGATGTGTA
GATGCCATTGCAGTTGATTGGTTTTGTTAATTAGGCAGGTTAGCTCTTAT
CAGCACGAATCACTTGATTCACAAACTGTAAATACTACGCTCGTTTTTTG
CATTTGTCAAATGTCGCTAGAAATTAAACTTCTCAAAGTAAATCCTCCAT
TTGATGCCAATAAAATGtattctttcaatctttttcagtaaaaacttttt
aaattagaaaaaatttgtaccctctatgttgaggaggtctttttgGGAAA
GGTGACCCCTTGgatttgtttcttattttttttaccaccctgAATTTTCA
ACCTCGTTTTACTAACCACTCTGGATTTTCAACCCCATTTTACTGACCAC
GCTGGATTTTCTGAGTCATTTTACTGACCGCtctggatttttacactcga
aaaaccagaccccacctggattttttatttgcCAAATCAGGGGTACGTCA
CACCTCTTCAACTCAGGGGGTACAGACTTTTTCTGGAATAACCCATTAAG
GAAATGAATTTTATATTGCTATAAATACTTTTATCACATTGAAAAATAGA
GTCTCTTCAAGAAATAATcacgtcaaaattaaaaatcacaacaacatttg
TACATTGGTCACTCTCGGATTGAAGTTTTTTGAAGCTGAAAATGGCATCC
ACAACTCAATAGGAATTTCTATGATGATTATTACTGCCTGTACAGATTTG
AGTTATCCCGTCGCCCTTAGTGGACTTTTGCCTGGCCACCTCTTTAGTAT
TAGATGGATATAACTTAAAATGGGGACTTTTTAACCCGAAGCAACTGGTT
TCGCACTAAAGGCGAAAAATACAGTAAAGTGACAagcatttttttgtgtt
ttagtTTTGCgagcatttttttctttttgtgtttGTATAATTATATTGAA
CAACAGTTTCTTGTTGAAAGCTcaaacatttcaatttttcgatttttcat
tttttcaaactaattttttgatACAAGACGGCAAAATGTGTTTGAAAAAG
TGCAATAGTTTTAAGGTATTGTTTTAGATGCATCGGTTAAGCTACAGTAC
TGTTATAGTCTTTTAGTCTGTTTTAGAATActgattttttaatgaaattt
tgaggtTCACCCGTTTGcgtcaaatcaaaaaattgtattaTGAGCTGTTT
GTTTTCTTTGTTGATTAACTTTTAcgattttatattatttaacATTTACA
TCAACTTTGTGATTATGTGATTATTGTTAGTATAACATTCGATATTTaga
acattcgattttttttttcgaatttaacTTCTCCTTATTTTTTATAGTGT
TATTTGtgtattactattattattgttaaaaatttacattaaaaagagAT
TTAGTTTATTATTCATAGATATAGTTTTAGATATTTATATActcgaaaaa
caaaaaaacaaatgtaAGTTTTTC
Run BLAST on NCBI

protein sequence of TCONS_00009689-protein

>TCONS_00009689-protein ID=TCONS_00009689-protein|Name=TCONS_00009689-protein|organism=Clytia hemisphaerica|type=polypeptide|length=324bp
MSFFGLQDMLNFIWAVILLVLSYVEAMFCYFFPISKKDLTGKIVLITGGG
GGLGKHLAISFAKCGATIILWDIEKESNDRNRNLVKAMKFNAFSYQCDCS
DQESVAKMAEKVEAEIGPIDILVNNAGVLNGNSITVLSEKQIRSTFDVNV
LAQFWTIKAFLPGMMQRSEGHIVTVSSSAGLNGTSYLTDYSASKFALVGI
HESLALELREQGFHNIQMTCVCPNFINTGMTWYPKTNVPWLIPILQVEDA
AQDIVDAVREDRNVVVLPKVLGKVLSLKRLIPLRGQLAIYDYLGIGIEPH
LSHRKSSSSLSRKRSPKMKSFTAT
Run BLAST on NCBI

transcript from alignment at sc0000098:65228..72592+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009689 ID=TCONS_00009689|Name=TCONS_00009689|organism=Clytia hemisphaerica|type=transcript|length=7365bp|location=Sequence derived from alignment at sc0000098:65228..72592+ (Clytia hemisphaerica)
caaaaagttgaaattttcctatttttccaattctgactgaagtttgattt
tctgatttttcaaactatcatgtttcaaaaaaggcacctttaaggctggc
acatacccatacccatacccttctcttgcctaagtaccccctcccccggg
ctgcctttttttcgacgaatcgtgtgtcatgtctattatttcactccgct
tatcttgacatcgcaaagttttcctaaacatcaagaactacggcaaatat
aacgcaagcaaagcgagaaaaaaaatctaattgcagagccgtctcggaca
tcgctggtcgccggtatggtgtaatttgggaatgccgccctttctgtttt
ctgatcatttttgccacaaaaatctttttcaaagtatggttaaaagatat
gtcacccgggagggatagagtcaaactttgaagagaattgtTCAGCAAAC
AgttaaaccggcgtgcgacacCGGGATACCGGCTAGTTTCTATCTAATAT
ATTTGATATCTTTGATGGTGATTTGTTCCATAAGTCAATGGTGAACTTAT
CAAGCATATTTGTAATCGAAGTAATTGAACATGTTCGAAGATCAAtggaa
tgtaattgacaatcaattgaaccaatcaaacGTTATTCATACGCAATCAA
ACACTATTGAATATTAGGAGGAATCTGTGAtttgattgagatttgattgg
gGTAGACAATTAAATCGCAATGATATGACTGCTTTTTTAATTGACACCGT
CTCTTGATATCAGGATCTAAAATCATAGAGTCTGGTGCACCTAACAGTTT
gctacagtttgtttgatactggtCTGTTAATGAACCCTTGACAGACGCTC
AAAACTTAGGAAACCCAAGCAGACAGGTAAAAAATATGCACATGTAATTT
AACATTAAATCTAAAGactgtcaaaacaaacaacaataGAGAGCCAGCCA
AATGCAAACCACCACCCAGCAGTCAGCCATTTTGTTGTTGCAATGTTTTA
GCGTTCTTCATTCTTCACTTCTtcagaaaaaattgttttgatgaTTGTCA
TTTGCATAAATTATTTGGGCCCTATAATGTGGCTGATAAGCGTCGAAAAA
ATCTTGATAAGCAAGCAGGCTTGCATGGACCAATCACTTTTTACATCCTC
AGATTTGGATGCAGGTGATCTAGGTAAAACATACCATAAAATATACTAGa
caaaaatatgataaactAGACTGTTAAATAGTTTacagtctggatatcca
ggttaAGTCAAGACTGAGCTTGTGTCAATCAAATTCTGCTATAACCTCAA
AATTTTTCCTAGAAGGGGTGTATCCGGAAGAGCGTACGTACAAATGTTct
gactttgccccaaaaataACTGACGTCCTACCCTATCCGGATTTTTCAtg
gctttttcaatttttttcatgttttctgtAGTTTCCTAAAGAACTAAAAA
GTGACTTTTCAGGTAAACCCTTGTTATGAAAGGTATTTATCACTTAAGAA
AACCtgatacttttcaaatttttttttcacaacttATTATCAATTTGTTT
TTGTGCTAGTAAAAAAAGAATACTAAATTTTTCTGGAAAGCTCATTTACT
GGATGTCGTTTTTTGGTTTGCAAGATATGCTGAATTTCATTTGGGCAGTT
ATTCTCCTTGTTTTGTCCTATGTGGAGGCAATGTTTTGCTATTTCTTTCC
CATATCAAAGAAGGacctcactggaaaaattgttctaATTACAGGTAATG
ATGAACCATTTATTGTTTCGATTTTTTCTAAGCCAAATTactatttttgt
taaaatcacATGATAATGAACTCATATTCTCTTTTGTTATACAACCAGCT
TTAAAGTTTCTAAAAATCATTGCGCTTGTCTTGTAAAATTCACACTCTCT
ATTATATTCGAATTCGTTCTTTTACTTTTTCCAAAACATATATTAATGTA
TTTGTTTTTTGGTACCAACAAGGTGGTGGTGGTGGACTTGGAAAACATCT
TGCAATCTCTTTTGCTAAATGTGGAGCTACCATTATTTTGTGGGATATAG
AAAAAGGTATATTAGATTTTAATAATcaagatttataaaaaaattcacat
taTAAATTCACTttagagagaaacttttttatgtatGGTGCTCCCAGTAC
ATGATAAAGTAAAATAATTCCGCTCAAATTCATTCATTCTATTAAGGCAA
AAACTCCTTTTTAAATACTTAAATCTGCAATTTTTATTAACTTCTATTAC
AGAGAGCAATGATAGGAATCGTAATTTGGTCAAAGCGATGAAATTCAATG
CATTCTCATACCAATGTGATTGCTCAGATCAGGAAAGTGTCgctaaaatg
gctgaaaaagttGAAGCGGAAATCGGTCCTATAGATATTTTGGTCAACAA
TGCTGGTGTTTTGAATGGGAACAGTATAACAGTGTTGTCAGAAAAACAAA
TCAGAAGTACTTTTGATGTCAATGTTCTTGCACAGTTTTGGGTAAAGTGA
TTCATCATTTGCATTATTAAGATCATACTTGGCTTATAAGAAGAATTTTA
AATGAAGTAATTCTTTCTTGTAAAAAGTGAAAGTCATTTGAGATCTAAAA
CAACGCCTAACAGAAAGCATGGTGCTTCAGTAATTTTCgttcaatatttt
tcattattttgatttaTATGAATCGTCTCAAAATATACATGTTCACAGTT
CTTCTCAGACAGATTTCTGTCTCTGCAAAGCTCAAAAAGAGGTTTTGTCC
CTTGAATTTAAAGCagaactcagcaaaaatttaaaatctgtgGGCTTATT
TTTCAAGTTGAGTCCATAGAAGAAAAACTTTGCTACAGCCACTGTTCAAT
AACTTTTAAATTATTCCAACAGACAATCAAAGCATTCTTACCAGGGATGA
TGCAACGTAGTGAAGGACACATTGTAACCGTTTCATCAAGTGCTGGTCTT
AACGGAACTTCATATCTCACAGATTATTCGGCTtcaaaatttgcacttgt
tggTATACATGAATCATTAGCATTGGAATTGCGAGAACAAGGCTTTCATA
ACATCCAAATGACTTGtgtttgtccaaattttattaATACTGGAATGACA
TGGTATCCTAAAACAAAGTAAATGTTGTGTCATTTTAATCTTAAAATTAT
TAGATCATTTATCATCTAGATGCAGATTTTTACTTCAAACCAAATTACTA
CACAATCATAATCAGCAAGAATTGTTACATGTATCTTCTAATTGTTCTAG
TTAGCATATAATGTcataatttaaattttgttttgaagctTGTTGGTTAA
GAAATATCTGCATTAAGATTTTTATACAATAGACACAAGGGATCAAATAT
ATATCTAGTCTTTTTATAACATCATTTCTTCACCTATCGTTCGATCTCAT
CCAGTCCACACTAGTGTCTTCCGCTTTTTCGCATATAATattcaaaacaa
ttaaaatcataACTTGACCAAAGCATGAATTGACAGTAAAATATCACTCA
AAATTAAATTATACTTTTCTGTTTAGCGTTCCATGGTTAATTCCAATCTT
GCAAGTGGAGGATGCAGCGCAAGATATTGTAGATGCTGTACGGGAAGATC
GTAATGTTGTTGTGTTGCCAAAAGTACTTGGAAAAGTTCTCAGTCTGAAA
AGGTTTGAATTTGAATGGCTTTCCGATGATTTCGTACCTGGGTCATGTGA
ATagaaatctttattttcaatGTCGTCTGCCAATATAAAATTAATCTTAC
TAttctaaatgagtttatgaaaaatgtgtgtAACCCATAATGGTAGCTGA
GCTGGtaattctcaaattttgccagaGGATGGTCGAGTATGAAAGAGGGA
TTTCGTgcagttttgagaaaaaaaaatcttatctttCAAATAAGGAGTTG
ATGATACATTGTGGTTTTAATgttatgtttaaaatttcattttcatctat
gaTTGAGCGCAAAAATTAACACTACCTTCCGATAAAACCCCCGTCCAAAA
AAGAATTTGACGTTTGAATCAAAGAATCCCCTACAGTGACTTTAGAGAGC
GTCAGCAATTACCATCTTTATCATCCAAGGGCTTTTGATGCCCAAGCTAA
ACCaacgtttgcgacgacgggaactgTCTAGTTTTACTAACCTAATATTC
CCAATCCTTCTGTCCCCTTGTTTGCTAATTTTATTTAAGGTTGATTGGCT
AACTGTTTTCTTTTAGATTGATACCATTAAGAGGGCAGTTAGCTATTTAT
GACTATCTTGGAATCGGTATTGAACCTCATCTGTCACATAGAAAAAGTTC
TTCAAGTTTGTCAAGAAAGAGATCACCAAAAATGAAAAGGTAATTTCTGT
TAGTAGAAAATTTACAGTTGACTGAACTGAACCTGATTGAACTTTTCTCG
TGTTGTCTCTTGATTCTGCTTCAGATTCTACCGTACGTTTGGCTCTTTAA
GGGTCCCATTTCCAAGCCTCCCAAatcaaaatgcactgtaagggtcgaga
TGAGCAAGGATGAGAAAATTTGCACTCTAAAGGTGTAGTGAGAGCTACAA
Tgttcttcgtgtgcacagacttgttaaaagcaaactaacttttttaaatt
atcaattaggtctataagatcacaaaaacgagtggtgagaaaatttttga
ccattttgctggtccccatgtgacgtcatcacttttggtggggcttgaaa
atgaaggtgaaaattagaagctcaaatatggctcaaatgaaagatattta
tccaagtattccaaaaaatatcacaacatatacctaaaaatcaatatttg
agaagctataaaggaaaatagctcaaaaatttacgtcatcgatgacgtca
tcggcaattaaaaaatcatcgaaaacgaaaaatttttgtttcatttgaaa
gaggacctgcttgggaacaaaaaatattactacggAAAACCTTGAATTTC
ACTTGATAGCAAATTATTCTGTGAAATGCGTttgacttgactctcaagct
ttTTAAAGATTCCTGGGCGTGCCCGAAGCTAACCTTTCACAggcaaattt
aatgaattacaaaTTTGCTGACAGGGGCTTTTAAGGAgtaattcagattt
ttttgtagtaatattttttgttcactagatggtcctctttcaaatgaaac
aaaaaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
AAGCTATTTTCCtttatagcttctcaaatattgattttcaggtatatgtt
gtgatattttttggaatcctttgataaatatctttcatttgagccatata
tgagcttctaattttcactttcattttcaagccccagcaaaagtgatgac
gtcacattgggaccagcaaaatggtcaaaacttttctcaccactcgtttt
tgtgatcttatggacctaattgatcatttaaaaaagttagtttgctttta
acaactctgtgcacacgaagaaTGTTTTCAGAACATAGTGGCTCTCACTA
GTGTAAAGTTTGGAAAATCTGacaatatttggaaaatctgacaatatttt
gcctaaaaacagtcaaaagttttcaagaaaatgcaccgtaagggtagATT
TTAAAGGCCTGATTTTTGGCCGCTTATACAATCGTTTtcgaatcgagtgc
cccccccgtcGGTGGGGTTGAATTTACGGAACtttacttttttccttttt
agtttTACTGCaacttgaaaagaaaagaaaaatgtgttGTGTTTTGTATG
GATattattaaaaatgaaaaatcttgaAAGACAGATGTGTAGATGCCATT
GCAGTTGATTGGTTTTGTTAATTAGGCAGGTTAGCTCTTATCAGCACGAA
TCACTTGATTCACAAACTGTAAATACTACGCTCGTTTTTTGCATTTGTCA
AATGTCGCTAGAAATTAAACTTCTCAAAGTAAATCCTCCATTTGATGCCA
ATAAAATGtattctttcaatctttttcagtaaaaactttttaaattagaa
aaaatttgtaccctctatgttgaggaggtctttttgGGAAAGGTGACCCC
TTGgatttgtttcttattttttttaccaccctgAATTTTCAACCTCGTTT
TACTAACCACTCTGGATTTTCAACCCCATTTTACTGACCACGCTGGATTT
TCTGAGTCATTTTACTGACCGCtctggatttttacactcgaaaaaccaga
ccccacctggattttttatttgcCAAATCAGGGGTACGTCACACCTCTTC
AACTCAGGGGGTACAGACTTTTTCTGGAATAACCCATTAAGGAAATGAAT
TTTATATTGCTATAAATACTTTTATCACATTGAAAAATAGAGTCTCTTCA
AGAAATAATcacgtcaaaattaaaaatcacaacaacatttgTACATTGGT
CACTCTCGGATTGAAGTTTTTTGAAGCTGAAAATGGCATCCACAACTCAA
TAGGAATTTCTATGATGATTATTACTGCCTGTACAGATTTGAGTTATCCC
GTCGCCCTTAGTGGACTTTTGCCTGGCCACCTCTTTAGTATTAGATGGAT
ATAACTTAAAATGGGGACTTTTTAACCCGAAGCAACTGGTTTCGCACTAA
AGGCGAAAAATACAGTAAAGTGACAagcatttttttgtgttttagtTTTG
CgagcatttttttctttttgtgtttGTATAATTATATTGAACAACAGTTT
CTTGTTGAAAGCTcaaacatttcaatttttcgatttttcattttttcaaa
ctaattttttgatACAAGACGGCAAAATGTGTTTGAAAAAGTGCAATAGT
TTTAAGGTATTGTTTTAGATGCATCGGTTAAGCTACAGTACTGTTATAGT
CTTTTAGTCTGTTTTAGAATActgattttttaatgaaattttgaggtTCA
CCCGTTTGcgtcaaatcaaaaaattgtattaTGAGCTGTTTGTTTTCTTT
GTTGATTAACTTTTAcgattttatattatttaacATTTACATCAACTTTG
TGATTATGTGATTATTGTTAGTATAACATTCGATATTTagaacattcgat
tttttttttcgaatttaacTTCTCCTTATTTTTTATAGTGTTATTTGtgt
attactattattattgttaaaaatttacattaaaaagagATTTAGTTTAT
TATTCATAGATATAGTTTTAGATATTTATATActcgaaaaacaaaaaaac
aaatgtaAGTTTTTC

Coding sequence (CDS) from alignment at sc0000098:65228..72592+

>TCONS_00009689 ID=TCONS_00009689|Name=TCONS_00009689|organism=Clytia hemisphaerica|type=CDS|length=6825bp|location=Sequence derived from alignment at sc0000098:65228..72592+ (Clytia hemisphaerica)
ATGTCGTTTTTTGGTTTGCAAGATATGCTGAATTTCATTTGGGCAGTTAT
TCTCCTTGTTTTGTCCTATGTGGAGGCAATGTTTTGCTATTTCTTTCCCA
TATCAAAGAAGGacctcactggaaaaattgttctaATTACAGGTGGTGGT
GGTGGACTTGGAAAACATCTTGCAATCTCTTTTGCTAAATGTGGAGCTAC
CATTATTTTGTGGGATATAGAAAAAGAGAGCAATGATAGGAATCGTAATT
TGGTCAAAGCGATGAAATTCAATGCATTCTCATACCAATGTGATTGCTCA
GATCAGGAAAGTGTCgctaaaatggctgaaaaagttGAAGCGGAAATCGG
TCCTATAGATATTTTGGTCAACAATGCTGGTGTTTTGAATGGGAACAGTA
TAACAGTGTTGTCAGAAAAACAAATCAGAAGTACTTTTGATGTCAATGTT
CTTGCACAGTTTTGGACAATCAAAGCATTCTTACCAGGGATGATGCAACG
TAGTGAAGGACACATTGTAACCGTTTCATCAAGTGCTGGTCTTAACGGAA
CTTCATATCTCACAGATTATTCGGCTtcaaaatttgcacttgttggTATA
CATGAATCATTAGCATTGGAATTGCGAGAACAAGGCTTTCATAACATCCA
AATGACTTGtgtttgtccaaattttattaATACTGGAATGACATGGTATC
CTAAAACAAACGTTCCATGGTTAATTCCAATCTTGCAAGTGGAGGATGCA
GCGCAAGATATTGTAGATGCTGTACGGGAAGATCGTAATGTTGTTGTGTT
GCCAAAAGTACTTGGAAAAGTTCTCAGTCTGAAAAGATTGATACCATTAA
GAGGGCAGTTAGCTATTTATGACTATCTTGGAATCGGTATTGAACCTCAT
CTGTCACATAGAAAAAGTTCTTCAAGTTTGTCAAGAAAGAGATCACCAAA
AATGAAAAGtttTACTGCaacttgaATGTCGTTTTTTGGTTTGCAAGATA
TGCTGAATTTCATTTGGGCAGTTATTCTCCTTGTTTTGTCCTATGTGGAG
GCAATGTTTTGCTATTTCTTTCCCATATCAAAGAAGGacctcactggaaa
aattgttctaATTACAGGTGGTGGTGGTGGACTTGGAAAACATCTTGCAA
TCTCTTTTGCTAAATGTGGAGCTACCATTATTTTGTGGGATATAGAAAAA
GAGAGCAATGATAGGAATCGTAATTTGGTCAAAGCGATGAAATTCAATGC
ATTCTCATACCAATGTGATTGCTCAGATCAGGAAAGTGTCgctaaaatgg
ctgaaaaagttGAAGCGGAAATCGGTCCTATAGATATTTTGGTCAACAAT
GCTGGTGTTTTGAATGGGAACAGTATAACAGTGTTGTCAGAAAAACAAAT
CAGAAGTACTTTTGATGTCAATGTTCTTGCACAGTTTTGGACAATCAAAG
CATTCTTACCAGGGATGATGCAACGTAGTGAAGGACACATTGTAACCGTT
TCATCAAGTGCTGGTCTTAACGGAACTTCATATCTCACAGATTATTCGGC
TtcaaaatttgcacttgttggTATACATGAATCATTAGCATTGGAATTGC
GAGAACAAGGCTTTCATAACATCCAAATGACTTGtgtttgtccaaatttt
attaATACTGGAATGACATGGTATCCTAAAACAAACGTTCCATGGTTAAT
TCCAATCTTGCAAGTGGAGGATGCAGCGCAAGATATTGTAGATGCTGTAC
GGGAAGATCGTAATGTTGTTGTGTTGCCAAAAGTACTTGGAAAAGTTCTC
AGTCTGAAAAGATTGATACCATTAAGAGGGCAGTTAGCTATTTATGACTA
TCTTGGAATCGGTATTGAACCTCATCTGTCACATAGAAAAAGTTCTTCAA
GTTTGTCAAGAAAGAGATCACCAAAAATGAAAAGtttTACTGCaacttga
ATGTCGTTTTTTGGTTTGCAAGATATGCTGAATTTCATTTGGGCAGTTAT
TCTCCTTGTTTTGTCCTATGTGGAGGCAATGTTTTGCTATTTCTTTCCCA
TATCAAAGAAGGacctcactggaaaaattgttctaATTACAGGTGGTGGT
GGTGGACTTGGAAAACATCTTGCAATCTCTTTTGCTAAATGTGGAGCTAC
CATTATTTTGTGGGATATAGAAAAAGAGAGCAATGATAGGAATCGTAATT
TGGTCAAAGCGATGAAATTCAATGCATTCTCATACCAATGTGATTGCTCA
GATCAGGAAAGTGTCgctaaaatggctgaaaaagttGAAGCGGAAATCGG
TCCTATAGATATTTTGGTCAACAATGCTGGTGTTTTGAATGGGAACAGTA
TAACAGTGTTGTCAGAAAAACAAATCAGAAGTACTTTTGATGTCAATGTT
CTTGCACAGTTTTGGACAATCAAAGCATTCTTACCAGGGATGATGCAACG
TAGTGAAGGACACATTGTAACCGTTTCATCAAGTGCTGGTCTTAACGGAA
CTTCATATCTCACAGATTATTCGGCTtcaaaatttgcacttgttggTATA
CATGAATCATTAGCATTGGAATTGCGAGAACAAGGCTTTCATAACATCCA
AATGACTTGtgtttgtccaaattttattaATACTGGAATGACATGGTATC
CTAAAACAAACGTTCCATGGTTAATTCCAATCTTGCAAGTGGAGGATGCA
GCGCAAGATATTGTAGATGCTGTACGGGAAGATCGTAATGTTGTTGTGTT
GCCAAAAGTACTTGGAAAAGTTCTCAGTCTGAAAAGATTGATACCATTAA
GAGGGCAGTTAGCTATTTATGACTATCTTGGAATCGGTATTGAACCTCAT
CTGTCACATAGAAAAAGTTCTTCAAGTTTGTCAAGAAAGAGATCACCAAA
AATGAAAAGtttTACTGCaacttgaATGTCGTTTTTTGGTTTGCAAGATA
TGCTGAATTTCATTTGGGCAGTTATTCTCCTTGTTTTGTCCTATGTGGAG
GCAATGTTTTGCTATTTCTTTCCCATATCAAAGAAGGacctcactggaaa
aattgttctaATTACAGGTGGTGGTGGTGGACTTGGAAAACATCTTGCAA
TCTCTTTTGCTAAATGTGGAGCTACCATTATTTTGTGGGATATAGAAAAA
GAGAGCAATGATAGGAATCGTAATTTGGTCAAAGCGATGAAATTCAATGC
ATTCTCATACCAATGTGATTGCTCAGATCAGGAAAGTGTCgctaaaatgg
ctgaaaaagttGAAGCGGAAATCGGTCCTATAGATATTTTGGTCAACAAT
GCTGGTGTTTTGAATGGGAACAGTATAACAGTGTTGTCAGAAAAACAAAT
CAGAAGTACTTTTGATGTCAATGTTCTTGCACAGTTTTGGACAATCAAAG
CATTCTTACCAGGGATGATGCAACGTAGTGAAGGACACATTGTAACCGTT
TCATCAAGTGCTGGTCTTAACGGAACTTCATATCTCACAGATTATTCGGC
TtcaaaatttgcacttgttggTATACATGAATCATTAGCATTGGAATTGC
GAGAACAAGGCTTTCATAACATCCAAATGACTTGtgtttgtccaaatttt
attaATACTGGAATGACATGGTATCCTAAAACAAACGTTCCATGGTTAAT
TCCAATCTTGCAAGTGGAGGATGCAGCGCAAGATATTGTAGATGCTGTAC
GGGAAGATCGTAATGTTGTTGTGTTGCCAAAAGTACTTGGAAAAGTTCTC
AGTCTGAAAAGATTGATACCATTAAGAGGGCAGTTAGCTATTTATGACTA
TCTTGGAATCGGTATTGAACCTCATCTGTCACATAGAAAAAGTTCTTCAA
GTTTGTCAAGAAAGAGATCACCAAAAATGAAAAGtttTACTGCaacttga
ATGTCGTTTTTTGGTTTGCAAGATATGCTGAATTTCATTTGGGCAGTTAT
TCTCCTTGTTTTGTCCTATGTGGAGGCAATGTTTTGCTATTTCTTTCCCA
TATCAAAGAAGGacctcactggaaaaattgttctaATTACAGGTGGTGGT
GGTGGACTTGGAAAACATCTTGCAATCTCTTTTGCTAAATGTGGAGCTAC
CATTATTTTGTGGGATATAGAAAAAGAGAGCAATGATAGGAATCGTAATT
TGGTCAAAGCGATGAAATTCAATGCATTCTCATACCAATGTGATTGCTCA
GATCAGGAAAGTGTCgctaaaatggctgaaaaagttGAAGCGGAAATCGG
TCCTATAGATATTTTGGTCAACAATGCTGGTGTTTTGAATGGGAACAGTA
TAACAGTGTTGTCAGAAAAACAAATCAGAAGTACTTTTGATGTCAATGTT
CTTGCACAGTTTTGGACAATCAAAGCATTCTTACCAGGGATGATGCAACG
TAGTGAAGGACACATTGTAACCGTTTCATCAAGTGCTGGTCTTAACGGAA
CTTCATATCTCACAGATTATTCGGCTtcaaaatttgcacttgttggTATA
CATGAATCATTAGCATTGGAATTGCGAGAACAAGGCTTTCATAACATCCA
AATGACTTGtgtttgtccaaattttattaATACTGGAATGACATGGTATC
CTAAAACAAACGTTCCATGGTTAATTCCAATCTTGCAAGTGGAGGATGCA
GCGCAAGATATTGTAGATGCTGTACGGGAAGATCGTAATGTTGTTGTGTT
GCCAAAAGTACTTGGAAAAGTTCTCAGTCTGAAAAGATTGATACCATTAA
GAGGGCAGTTAGCTATTTATGACTATCTTGGAATCGGTATTGAACCTCAT
CTGTCACATAGAAAAAGTTCTTCAAGTTTGTCAAGAAAGAGATCACCAAA
AATGAAAAGtttTACTGCaacttgaATGTCGTTTTTTGGTTTGCAAGATA
TGCTGAATTTCATTTGGGCAGTTATTCTCCTTGTTTTGTCCTATGTGGAG
GCAATGTTTTGCTATTTCTTTCCCATATCAAAGAAGGacctcactggaaa
aattgttctaATTACAGGTGGTGGTGGTGGACTTGGAAAACATCTTGCAA
TCTCTTTTGCTAAATGTGGAGCTACCATTATTTTGTGGGATATAGAAAAA
GAGAGCAATGATAGGAATCGTAATTTGGTCAAAGCGATGAAATTCAATGC
ATTCTCATACCAATGTGATTGCTCAGATCAGGAAAGTGTCgctaaaatgg
ctgaaaaagttGAAGCGGAAATCGGTCCTATAGATATTTTGGTCAACAAT
GCTGGTGTTTTGAATGGGAACAGTATAACAGTGTTGTCAGAAAAACAAAT
CAGAAGTACTTTTGATGTCAATGTTCTTGCACAGTTTTGGACAATCAAAG
CATTCTTACCAGGGATGATGCAACGTAGTGAAGGACACATTGTAACCGTT
TCATCAAGTGCTGGTCTTAACGGAACTTCATATCTCACAGATTATTCGGC
TtcaaaatttgcacttgttggTATACATGAATCATTAGCATTGGAATTGC
GAGAACAAGGCTTTCATAACATCCAAATGACTTGtgtttgtccaaatttt
attaATACTGGAATGACATGGTATCCTAAAACAAACGTTCCATGGTTAAT
TCCAATCTTGCAAGTGGAGGATGCAGCGCAAGATATTGTAGATGCTGTAC
GGGAAGATCGTAATGTTGTTGTGTTGCCAAAAGTACTTGGAAAAGTTCTC
AGTCTGAAAAGATTGATACCATTAAGAGGGCAGTTAGCTATTTATGACTA
TCTTGGAATCGGTATTGAACCTCATCTGTCACATAGAAAAAGTTCTTCAA
GTTTGTCAAGAAAGAGATCACCAAAAATGAAAAGtttTACTGCaacttga
ATGTCGTTTTTTGGTTTGCAAGATATGCTGAATTTCATTTGGGCAGTTAT
TCTCCTTGTTTTGTCCTATGTGGAGGCAATGTTTTGCTATTTCTTTCCCA
TATCAAAGAAGGacctcactggaaaaattgttctaATTACAGGTGGTGGT
GGTGGACTTGGAAAACATCTTGCAATCTCTTTTGCTAAATGTGGAGCTAC
CATTATTTTGTGGGATATAGAAAAAGAGAGCAATGATAGGAATCGTAATT
TGGTCAAAGCGATGAAATTCAATGCATTCTCATACCAATGTGATTGCTCA
GATCAGGAAAGTGTCgctaaaatggctgaaaaagttGAAGCGGAAATCGG
TCCTATAGATATTTTGGTCAACAATGCTGGTGTTTTGAATGGGAACAGTA
TAACAGTGTTGTCAGAAAAACAAATCAGAAGTACTTTTGATGTCAATGTT
CTTGCACAGTTTTGGACAATCAAAGCATTCTTACCAGGGATGATGCAACG
TAGTGAAGGACACATTGTAACCGTTTCATCAAGTGCTGGTCTTAACGGAA
CTTCATATCTCACAGATTATTCGGCTtcaaaatttgcacttgttggTATA
CATGAATCATTAGCATTGGAATTGCGAGAACAAGGCTTTCATAACATCCA
AATGACTTGtgtttgtccaaattttattaATACTGGAATGACATGGTATC
CTAAAACAAACGTTCCATGGTTAATTCCAATCTTGCAAGTGGAGGATGCA
GCGCAAGATATTGTAGATGCTGTACGGGAAGATCGTAATGTTGTTGTGTT
GCCAAAAGTACTTGGAAAAGTTCTCAGTCTGAAAAGATTGATACCATTAA
GAGGGCAGTTAGCTATTTATGACTATCTTGGAATCGGTATTGAACCTCAT
CTGTCACATAGAAAAAGTTCTTCAAGTTTGTCAAGAAAGAGATCACCAAA
AATGAAAAGtttTACTGCaacttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005419XLOC_005419Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009689-proteinTCONS_00009689-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009689-exon-sc0000098-1491911889:65228..66971TCONS_00009689-exon-sc0000098-1491911889:65228..66971Clytia hemisphaericaexon
TCONS_00009689-exon-sc0000098-1510915933:65228..66971TCONS_00009689-exon-sc0000098-1510915933:65228..66971Clytia hemisphaericaexon
TCONS_00009689-exon-sc0000098-1575043694:65228..66971TCONS_00009689-exon-sc0000098-1575043694:65228..66971Clytia hemisphaericaexon
TCONS_00009689-exon-sc0000098-1491911889:67200..67283TCONS_00009689-exon-sc0000098-1491911889:67200..67283Clytia hemisphaericaexon
TCONS_00009689-exon-sc0000098-1510915933:67200..67283TCONS_00009689-exon-sc0000098-1510915933:67200..67283Clytia hemisphaericaexon
TCONS_00009689-exon-sc0000098-1575043694:67200..67283TCONS_00009689-exon-sc0000098-1575043694:67200..67283Clytia hemisphaericaexon
TCONS_00009689-exon-sc0000098-1491911889:67480..67718TCONS_00009689-exon-sc0000098-1491911889:67480..67718Clytia hemisphaericaexon
TCONS_00009689-exon-sc0000098-1510915933:67480..67718TCONS_00009689-exon-sc0000098-1510915933:67480..67718Clytia hemisphaericaexon
TCONS_00009689-exon-sc0000098-1575043694:67480..67718TCONS_00009689-exon-sc0000098-1575043694:67480..67718Clytia hemisphaericaexon
TCONS_00009689-exon-sc0000098-1491911889:68100..68344TCONS_00009689-exon-sc0000098-1491911889:68100..68344Clytia hemisphaericaexon
TCONS_00009689-exon-sc0000098-1510915933:68100..68344TCONS_00009689-exon-sc0000098-1510915933:68100..68344Clytia hemisphaericaexon
TCONS_00009689-exon-sc0000098-1575043694:68100..68344TCONS_00009689-exon-sc0000098-1575043694:68100..68344Clytia hemisphaericaexon
TCONS_00009689-exon-sc0000098-1491911889:68754..68879TCONS_00009689-exon-sc0000098-1491911889:68754..68879Clytia hemisphaericaexon
TCONS_00009689-exon-sc0000098-1510915933:68754..68879TCONS_00009689-exon-sc0000098-1510915933:68754..68879Clytia hemisphaericaexon
TCONS_00009689-exon-sc0000098-1575043694:68754..68879TCONS_00009689-exon-sc0000098-1575043694:68754..68879Clytia hemisphaericaexon
TCONS_00009689-exon-sc0000098-1491911889:69444..69566TCONS_00009689-exon-sc0000098-1491911889:69444..69566Clytia hemisphaericaexon
TCONS_00009689-exon-sc0000098-1510915933:69444..69566TCONS_00009689-exon-sc0000098-1510915933:69444..69566Clytia hemisphaericaexon
TCONS_00009689-exon-sc0000098-1575043694:69444..69566TCONS_00009689-exon-sc0000098-1575043694:69444..69566Clytia hemisphaericaexon
TCONS_00009689-exon-sc0000098-1491911889:71080..72592TCONS_00009689-exon-sc0000098-1491911889:71080..72592Clytia hemisphaericaexon
TCONS_00009689-exon-sc0000098-1510915933:71080..72592TCONS_00009689-exon-sc0000098-1510915933:71080..72592Clytia hemisphaericaexon
TCONS_00009689-exon-sc0000098-1575043694:71080..72592TCONS_00009689-exon-sc0000098-1575043694:71080..72592Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000098supercontigsc0000098:65228..72592 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.62027	2.44025	2.04549	1.70004	6.42603	5.03887	6.0659	5.75057	5.31392	7.30158	8.15295	4.55267	6.3229	5.22787	3.46778	3.99381	6.19175	6.24357	3.85993	7.16193	8.08513	8.70446	4.75718	5.98989	10.7806	12.851	23.9384	19.4774	13.1011	10.5764
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR020904Sc_DH/Rdtase_CS
IPR016040NAD(P)-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016491 oxidoreductase activity
Blast
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BLAST of TCONS_00009689 vs. Swiss-Prot (Human)
Match: RDHE2 (Epidermal retinol dehydrogenase 2 OS=Homo sapiens GN=SDR16C5 PE=2 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.832e-53
Identity = 118/277 (42.60%), Postives = 173/277 (62.45%), Query Frame = 1 
Query: 1660 VLSYVEAMFCYFFPISKKDLXXXXXXXXXXXXXXXXHLAISFAKCGATIILWDIEKESNDRNRNLVK-AMKFNAFSYQCDCSDQESVAKMAEKVEAEIGPIDILVNNAGVLNGNSITVLSEKQIRSTFDVNVLAQFWTIKAFLPGMMQRSEGHIVTVSSSAGLNGTSYLTDYSASKFALVGIHESLALELREQGFHNIQMTCVCPNFINTGMTWYPKTNVPWLIPILQVEDAAQDIVDAVREDRNXXXXXXXXXXXXXXXRLIPLRGQLAIYDYLGI 2487
            + S +EAM     P  +K++ G+IVLITG G GLG+ LA+ FA+ G+ ++LWDI KE N+    + + A      +Y CDCS +E V ++A++V+ E+G + IL+NNAG++ G       ++ +  +FDVN  A  WT KAFLP M+    GH+V +SSSAGL+G + L DY ASKFA  G  ES+ +E   Q    I+ T VCP FI TGM     T  P L+PIL+ + A + IV+A+ +++  + +PK+L  ++ LK  +PL+  L I DYLGI
Sbjct:   19 LFSLLEAMIFALLPKPRKNVAGEIVLITGAGSGLGRLLALQFARLGSVLVLWDINKEGNEETCKMAREAGATRVHAYTCDCSQKEGVYRVADQVKKEVGDVSILINNAGIVTGKKFLDCPDELMEKSFDVNFKAHLWTYKAFLPAMIANDHGHLVCISSSAGLSGVNGLADYCASKFAAFGFAESVFVETFVQKQKGIKTTIVCPFFIKTGMFEGCTTGCPSLLPILEPKYAVEKIVEAILQEKMYLYMPKLLYFMMFLKSFLPLKTGLLIADYLGI 295
The following BLAST results are available for this feature:
BLAST of TCONS_00009689 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RDHE21.832e-5342.60Epidermal retinol dehydrogenase 2 OS=Homo sapiens ... [more]
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