TCONS_00009689-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00009689-protein
Unique NameTCONS_00009689-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length324

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00009689-protein ID=TCONS_00009689-protein|Name=TCONS_00009689-protein|organism=Clytia hemisphaerica|type=polypeptide|length=324bp
MSFFGLQDMLNFIWAVILLVLSYVEAMFCYFFPISKKDLTGKIVLITGGG
GGLGKHLAISFAKCGATIILWDIEKESNDRNRNLVKAMKFNAFSYQCDCS
DQESVAKMAEKVEAEIGPIDILVNNAGVLNGNSITVLSEKQIRSTFDVNV
LAQFWTIKAFLPGMMQRSEGHIVTVSSSAGLNGTSYLTDYSASKFALVGI
HESLALELREQGFHNIQMTCVCPNFINTGMTWYPKTNVPWLIPILQVEDA
AQDIVDAVREDRNVVVLPKVLGKVLSLKRLIPLRGQLAIYDYLGIGIEPH
LSHRKSSSSLSRKRSPKMKSFTAT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005419XLOC_005419Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00009689TCONS_00009689Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR020904Sc_DH/Rdtase_CS
IPR016040NAD(P)-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016491 oxidoreductase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002347Short-chain dehydrogenase/reductase SDRPRINTSPR00080SDRFAMILYcoord: 117..128
score: 59.16
coord: 170..178
score: 42.57
coord: 190..209
score: 41.18
IPR002347Short-chain dehydrogenase/reductase SDRPRINTSPR00081GDHRDHcoord: 214..231
score: 28.93
coord: 190..209
score: 40.2
coord: 43..60
score: 38.55
coord: 117..128
score: 63.41
coord: 164..180
score: 32.7
IPR002347Short-chain dehydrogenase/reductase SDRPFAMPF00106adh_shortcoord: 42..232
e-value: 5.2E-51
score: 172.8
NoneNo IPR availableGENE3D3.40.50.720coord: 223..279
e-value: 0.085
score: 11.8
NoneNo IPR availableGENE3D3.40.50.720coord: 33..222
e-value: 2.3E-58
score: 196.6
NoneNo IPR availableCDDcd0533917beta-HSDXI-like_SDR_ccoord: 43..284
e-value: 4.66291E-93
score: 278.357
IPR020904Short-chain dehydrogenase/reductase, conserved sitePROSITEPS00061ADH_SHORTcoord: 177..205
IPR016040NAD(P)-binding domainSUPERFAMILY51735NAD(P)-binding Rossmann-fold domainscoord: 37..289

Blast
[Close]
BLAST of TCONS_00009689-protein vs. Swiss-Prot (Human)
Match: RDHE2 (Epidermal retinol dehydrogenase 2 OS=Homo sapiens GN=SDR16C5 PE=2 SV=2)

HSP 1 Score: 234.958 bits (598), Expect = 8.564e-76
Identity = 118/277 (42.60%), Postives = 173/277 (62.45%), Query Frame = 0 
Query:   20 VLSYVEAMFCYFFPISKKDLTGKIVLITGGGGGLGKHLAISFAKCGATIILWDIEKESNDRNRNLVK-AMKFNAFSYQCDCSDQESVAKMAEKVEAEIGPIDILVNNAGVLNGNSITVLSEKQIRSTFDVNVLAQFWTIKAFLPGMMQRSEGHIVTVSSSAGLNGTSYLTDYSASKFALVGIHESLALELREQGFHNIQMTCVCPNFINTGMTWYPKTNVPWLIPILQVEDAAQDIVDAVREDRNVVVLPKVLGKVLSLKRLIPLRGQLAIYDYLGI 295
            + S +EAM     P  +K++ G+IVLITG G GLG+ LA+ FA+ G+ ++LWDI KE N+    + + A      +Y CDCS +E V ++A++V+ E+G + IL+NNAG++ G       ++ +  +FDVN  A  WT KAFLP M+    GH+V +SSSAGL+G + L DY ASKFA  G  ES+ +E   Q    I+ T VCP FI TGM     T  P L+PIL+ + A + IV+A+ +++  + +PK+L  ++ LK  +PL+  L I DYLGI
Sbjct:   19 LFSLLEAMIFALLPKPRKNVAGEIVLITGAGSGLGRLLALQFARLGSVLVLWDINKEGNEETCKMAREAGATRVHAYTCDCSQKEGVYRVADQVKKEVGDVSILINNAGIVTGKKFLDCPDELMEKSFDVNFKAHLWTYKAFLPAMIANDHGHLVCISSSAGLSGVNGLADYCASKFAAFGFAESVFVETFVQKQKGIKTTIVCPFFIKTGMFEGCTTGCPSLLPILEPKYAVEKIVEAILQEKMYLYMPKLLYFMMFLKSFLPLKTGLLIADYLGI 295
The following BLAST results are available for this feature:
BLAST of TCONS_00009689-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RDHE28.564e-7642.60Epidermal retinol dehydrogenase 2 OS=Homo sapiens ... [more]
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