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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009681 ID=TCONS_00009681|Name=TCONS_00009681|organism=Clytia hemisphaerica|type=transcript|length=4208bpRun BLAST on NCBI protein sequence of TCONS_00009681-protein >TCONS_00009681-protein ID=TCONS_00009681-protein|Name=TCONS_00009681-protein|organism=Clytia hemisphaerica|type=polypeptide|length=715bp MSESPTPSCDDYITTEELFQSFMDVALIAEQEINNPENGEIIQTNNEITQRun BLAST on NCBI transcript from alignment at sc0000098:11966..35116+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009681 ID=TCONS_00009681|Name=TCONS_00009681|organism=Clytia hemisphaerica|type=transcript|length=23151bp|location=Sequence derived from alignment at sc0000098:11966..35116+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000098:11966..35116+ >TCONS_00009681 ID=TCONS_00009681|Name=TCONS_00009681|organism=Clytia hemisphaerica|type=CDS|length=19332bp|location=Sequence derived from alignment at sc0000098:11966..35116+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00009681 vs. Swiss-Prot (Human)
Match: PKHA6 (Pleckstrin homology domain-containing family A member 6 OS=Homo sapiens GN=PLEKHA6 PE=1 SV=4) HSP 1 Score: 87.8113 bits (216), Expect = 3.005e-17 Identity = 48/148 (32.43%), Postives = 85/148 (57.43%), Query Frame = 3
Query: 1596 EKTASMNRKDTSIPCLCSGYLFKQGGTGITPKNWRLRWFELKKDNCLYYYKNEQDPTPAGAVILTKYQVTRAVEAN----KRFSFKLTKGGARTYYFAANSEDEMKKWMKNLGEAVTIAMSD-QSSIPECSLKNVSVPATSIMEPDCH 2024
+++ SM R + + P +G+LFKQ +G+ K W RWF L D CL+YYK+E++ + G++ L ++V AV+ + ++ +FK G RTY+F+A S +E + W++ +GEA + + Q S+P+ + P + + P H
Sbjct: 47 KRSHSMKR-NPNAPVTKAGWLFKQASSGV--KQWNKRWFVLV-DRCLFYYKDEKEESILGSIPLLSFRVA-AVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAARVQIPPAQKSVPQAVRHSHEKPDSENVPPSKH 189 The following BLAST results are available for this feature:
BLAST of TCONS_00009681 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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