TCONS_00009669 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009669
Unique NameTCONS_00009669
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length490

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009669 ID=TCONS_00009669|Name=TCONS_00009669|organism=Clytia hemisphaerica|type=transcript|length=490bp
CAGATACCAAACACCTGactttcaaactcaaatattcCAACACTTCAACA
GCTCCCAGACAACAGGAAATAACTCATCACTTGAAGCAGATGGCAGtagg
gaaaaaacaaaaacaaaagtaatcCAGTGTAGATAGCTCGTACAATGAAA
GCTAAAACATGCGAGGCTGATTGTCTTGCTTTTTGGCCCTCCTCATCGCA
TTGCCTTTCCAACTTATTGATTTCCTCATTTATTTCacccaattcaaaaa
aaaacaatcaataacAAATATAAAATCTTCAGCATCAATAATTAGACAAA
GCCATAGTCTctttaatttctgaaattttctctCCCATCAACACAATCTG
CGAAACCACTGGTATCAATAGCTGATGCTGTTGTTGTTTTATATACACTG
TGTTGATTTATGCCTAGCTTTCTCTTTTTTCCTACTTTCAGCTTGGGTGC
CTCTGGGTGCCTTTCAATGCTGATTCAAACTCGTACAAAC
Run BLAST on NCBI

transcript from alignment at sc0000097:467455..467944

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009669 ID=TCONS_00009669|Name=TCONS_00009669|organism=Clytia hemisphaerica|type=transcript|length=490bp|location=Sequence derived from alignment at sc0000097:467455..467944 (Clytia hemisphaerica)
GTTTGTACGAGTTTGAATCAGCATTGAAAGGCACCCAGAGGCACCCAAGC
TGAAAGTAGGAAAAAAGAGAAAGCTAGGCATAAATCAACACAGTGTATAT
AAAACAACAACAGCATCAGCTATTGATACCAGTGGTTTCGCAGATTGTGT
TGATGGGagagaaaatttcagaaattaaagAGACTATGGCTTTGTCTAAT
TATTGATGCTGAAGATTTTATATTTgttattgattgtttttttttgaatt
gggtGAAATAAATGAGGAAATCAATAAGTTGGAAAGGCAATGCGATGAGG
AGGGCCAAAAAGCAAGACAATCAGCCTCGCATGTTTTAGCTTTCATTGTA
CGAGCTATCTACACTGgattacttttgtttttgttttttccctaCTGCCA
TCTGCTTCAAGTGATGAGTTATTTCCTGTTGTCTGGGAGCTGTTGAAGTG
TTGgaatatttgagtttgaaagtCAGGTGTTTGGTATCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005405XLOC_005405Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009669-exon-sc0000097-1491911889:467455..467944TCONS_00009669-exon-sc0000097-1491911889:467455..467944Clytia hemisphaericaexon
TCONS_00009669-exon-sc0000097-1510915933:467455..467944TCONS_00009669-exon-sc0000097-1510915933:467455..467944Clytia hemisphaericaexon
TCONS_00009669-exon-sc0000097-1575043694:467455..467944TCONS_00009669-exon-sc0000097-1575043694:467455..467944Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000097supercontigsc0000097:467455..467944 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.126255	0.123119	0.571811	0.279714	1.02157	0.807262	0.486963	1.67159	0.425572	0.922494	0	0.756768	0.167937	1.04642	0.286768	0.692428	0.473897	0.680021	5.23428	1.96621	0.244142	0.357251	0.144762	0.13161	0.271109	0.604897	0.173121	0	0.140134	0.428322
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009669 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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