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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009640 ID=TCONS_00009640|Name=TCONS_00009640|organism=Clytia hemisphaerica|type=transcript|length=2780bpRun BLAST on NCBI protein sequence of TCONS_00009640-protein >TCONS_00009640-protein ID=TCONS_00009640-protein|Name=TCONS_00009640-protein|organism=Clytia hemisphaerica|type=polypeptide|length=707bp MQNLLSPDTSLCFKENEFSDRNFNVDKFVAKCKDRVPMSKLREDLEAHYKRun BLAST on NCBI transcript from alignment at sc0000097:469981..484865- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009640 ID=TCONS_00009640|Name=TCONS_00009640|organism=Clytia hemisphaerica|type=transcript|length=14885bp|location=Sequence derived from alignment at sc0000097:469981..484865- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000097:469981..484865- >TCONS_00009640 ID=TCONS_00009640|Name=TCONS_00009640|organism=Clytia hemisphaerica|type=CDS|length=33984bp|location=Sequence derived from alignment at sc0000097:469981..484865- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00009640 vs. Swiss-Prot (Human)
Match: COG2 (Conserved oligomeric Golgi complex subunit 2 OS=Homo sapiens GN=COG2 PE=1 SV=1) HSP 1 Score: 471.855 bits (1213), Expect = 1.531e-152 Identity = 281/736 (38.18%), Postives = 415/736 (56.39%), Query Frame = 3
Query: 72 SPDTSLCFKENEFSDRNFNVDKFVAKCKDRVPMSKLREDLEAHYKNIQHALVELINRDYADFVSLSSNLIGTDKTIGNLCGPLDQFKEQVLAIQKDLKGALDVVEKKLEQRRKVREKKSCLHHLITVVHSVEKIEKTLTADLKSPDMEIFMHEDKTHPGHVLERVAGEFNQLQFHVNQSKGHPIIESIKPRVALITSKLQENLETTFEQGISSKDSELISRCLRTYALIDKTSHAEEMFKHLVVKPFVDEVISETYLDQH--GLEQICADLLKFVEDECQIMIELTSAEMLKNDVTVATATQDADGNKGHTVKGFDFLVNSVWVEIAQAFEENLPLIFSPGNPDSFLARYKTMMRFMDNFEEQCMTPECFKALRSHPGYHSFMVKWSLPVYFQIRFQDIGGEIEMSV-----DRPNEKSPEDLFMTNIVGTCWNSIKRCWCDEVYIAPLKGRFWKLTLQISNRLCIFLKNISEKKDEKE-------------------------------------RITIENMTSLLGDSSYFSKKFGDYFKESIVSKL------NDSASPVNLKGCKDSVDECIASLHIACDGLCLYMVNRLSDEGIVQLENVNNVPRLFRRTNKEPPTTPSSYVQLAFQSLESFKSTSSTLDVKYQKKITEDTAHTMLS----KFYNSVNELLTSIKKTEDSLLRLKQQRMAAAGQSSPILANKASEASDEDKIRKQLLLDAQEFGVQMEKLGL 2117
PDT LCF ++EF +F+VD FV+ C+ RV + +LR+DLE +YK ++ A+VELIN+DYADFV+LS+NL+G DK + L PL Q +E+VL+++ + + V++++ ++ +R+KK C+ LI V+ SVEKIEK L + S + G +LER+A EFNQLQFH QSKG P+++ ++PR+A IT+ LQ++LE +G+ + D ++I CLRTYA IDKT AE + ++VKP++DEVI E +++ H GL+ + LL+FV C+++ E+T + KG+TV G+DFLVNSVW +I Q EE LP +F+PGNPD+F +Y M F+ E QC + K LR+HP YHSF KW+LPVYFQIRF++I G +E ++ D P E SP L ++ W+S++RCW DE+++ L R W+LTLQI R +F+ +S + E I+ + ++ D ++ + E I KL N S+ L+ + S C+ SL ++ LSD L++ VPRL+RRTNKE PTT SSYV A + L F+ S D K ++ I + LS K+Y +V+++L S+KK E+SL RLKQ R ++P+ + SD+DKIR QL LD + G Q++KLGL
Sbjct: 11 GPDT-LCFDKDEFMKEDFDVDHFVSDCRKRVQLEELRDDLELYYKLLKTAMVELINKDYADFVNLSTNLVGMDKALNQLSVPLGQLREEVLSLRSSVSEGIRAVDERMSKQEDIRKKKMCVLRLIQVIRSVEKIEKILNSQ-SSKETSALEASSPLLTGQILERIATEFNQLQFHAVQSKGMPLLDKVRPRIAGITAMLQQSLEGLLLEGLQTSDVDIIRHCLRTYATIDKTRDAEALVGQVLVKPYIDEVIIEQFVESHPNGLQVMYNKLLEFVPHHCRLLREVTGGAI--------------SSEKGNTVPGYDFLVNSVWPQIVQGLEEKLPSLFNPGNPDAFHEKYTISMDFVRRLERQCGSQASVKRLRAHPAYHSFNKKWNLPVYFQIRFREIAGSLEAALTDVLEDAPAE-SPYCLLASH---RTWSSLRRCWSDEMFLPLLVHRLWRLTLQILARYSVFVNELSLRPISNESPKEIKKPLVTGSKEPSITQGNTEDQGSGPSETKPVVSISRTQLVYVVADLDKLQEQLPELL-EIIKPKLEMIGFKNFSSISAALEDSQSSFSACVPSLSSK-------IIQDLSDSCFGFLKSALEVPRLYRRTNKEVPTTASSYVDSALKPL--FQLQSGHKD-KLKQAIIQQWLEGTLSESTHKYYETVSDVLNSVKKMEESLKRLKQARKTTP--ANPV--GPSGGMSDDDKIRLQLALDVEYLGEQIQKLGL 711 The following BLAST results are available for this feature:
BLAST of TCONS_00009640 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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