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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009629 ID=TCONS_00009629|Name=TCONS_00009629|organism=Clytia hemisphaerica|type=transcript|length=1454bp ATGAGAATAACTGAAGCTGTAAACCCATGATTTTAAATTTACCATTTCAC AATATAATTCTTTTTAAACAGGGTGCTGAGTTGAAACAATGGAGAAACTC TGATCCTGGAATTGCTGTCGGCACTCAACGATTCAGTGGAGTCGATTTCT CTGGAACCTTCTACATTCATGACGACAAAGATGATGACTTCGCTGGATTC GTGTTTTCTTTACAAGACAGCAGTAATTTCTATGCTCTCAtgtggaaaaa agataaacaaacatatTGGTATGAAACACCATTTAAAAGTGTTGGACACC CTGGTATTCAACTTAAAGCTGTCAGCTCAAAAACTGGACCTGGTGAATAC ATGAGAAATGCGTTGTGGGATCATAAATCAATCCCATCACAGACCAAAAT TGTATGGGCTGATCCCTTAAAGAAAGGATGGGTACCAAAACGTTCATACA GATGGGAGTTGATTCACAGACCTTCTATTGGTCTCATCAGAATCAAGATT ATGGACGGAGAAGAATTAGCTAGTGACACTGGATACATCATTGACCACCA ATTGAAAGGAGGGCGTGTTGGAGTTTTAGCTTTCTCGCAAAAAGAAATTG TTTTCTCTGACCTTCAATACAAATGTAACGAAAAAACACCAGAGGATTAC AAACCAAACCTACCAAACTAAATATGACAACAATATTCTTCTGGCAGTGA GTTGACCAAGGAAGTtaacaaaaccaaaaacatcaatcattcaaatacaa aaacaaatCTTGAACAAACAAACACGTATAGAATAGATAAAGTAGGAGCA TTATAAACAAAACCttcttgtttgaaaaataaagaggAAGAACATATAAT GGACTCATGGCAGAGCTAGAAACACGACATATTGACAGTTGGAAAGCTTG GGATTTCAGAAATTGTAGATCTTGAAAACTACAAGAAGACATAAAGACAT TGAGTAAGAAAGTGTAAAAATGTATTTAAGACTTAAATAAATGCTAATGA ACATCTAATattcaaaacaatttcaaaattttaaaattttctctttGAGA TTGATTTAAATGCAAATttgtaagaaaatgaaatactaGAGCCAATACCT TTGCAGAAAGTCAAAGCCAAAAGGTGCTCCCGAATAAGTCTCTAAGTTGT TAAGTTCTAATGGAAACTCAAGGTATGTTAActagaaaatctttaaaaac ataaaaaatatttagaattttttcattttatgagaaaaatattgtaccct tttttttttgttatattttttattggtaTGTAATAATTATTCTTTTTTGT CGTAATTCTACGACTGTATATTTTAAAAAACtctatagaaatattttttg ttctcaatttttgtttcaatattttagcttttttttgttttattttagtt ttcttttgtttagtttaCGTGCACAAATATgctaaaatatataataaaga aaaa Run BLAST on NCBI protein sequence of TCONS_00009629-protein >TCONS_00009629-protein ID=TCONS_00009629-protein|Name=TCONS_00009629-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
MILNLPFHNIILFKQGAELKQWRNSDPGIAVGTQRFSGVDFSGTFYIHDD KDDDFAGFVFSLQDSSNFYALMWKKDKQTYWYETPFKSVGHPGIQLKAVS SKTGPGEYMRNALWDHKSIPSQTKIVWADPLKKGWVPKRSYRWELIHRPS IGLIRIKIMDGEELASDTGYIIDHQLKGGRVGVLAFSQKEIVFSDLQYKC NEKTPEDYKPNLPN Run BLAST on NCBI transcript from alignment at sc0000097:229839..232911- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009629 ID=TCONS_00009629|Name=TCONS_00009629|organism=Clytia hemisphaerica|type=transcript|length=3073bp|location=Sequence derived from alignment at sc0000097:229839..232911- (Clytia hemisphaerica) ATGAGAATAACTGAAGCTGTAAACCCATGATTTTAAATTTACCATTTCAC
AATATAATTCTTTTTAAACAGGGTGCTGAGTTGAAACAATGGAGAAACTC
TGATCCTGGAATTGCTGTCGGTAAGAATCTCAATACAACAGCATCTCTAT
CACCTAAAACTTTAATATTGAATGACCAGGAATGACCATAGAAAAAACCT
CAGTGCTTTTTATAACTGATATGGATTTGTAATTGTCAGAGATAGATGAA
AAGTCAAATATCTATATCTAGAGTAATGGCAGTAACTCGCTCGAATATTT
ATGAAATCGACCCAGGTTAGCTCGAATGAGTACAGGGTGTTTTGCCTGAG
ACAGAAAGAGGATTTTAAACAGCAAATTAGTACATATTCCTGAAACTTTT
GTGGATCATGTAGAGTTTTGAGACGTAATGTCTCTTTAAATACTTCACTG
AGACGGAAATTCGTCTGAAACAGAGGAACCTTTAAAACTGAGCATTTTCT
AACATTATTATTTCCCATCCATAGGCACTCAACGATTCAGTGGAGTCGAT
TTCTCTGGAACCTTCTACATTCATGACGACAAAGATGATGACTTCGCTGG
ATTCGTGTTTTCTTTACAAGACAGCAGTAATTTCTATGCTCTCATGTGGA
AAAAAGATAAACAAACATATTGGTATGAAACACCATTTAAAAGTGTTGGA
CACCCTGGTATTCAACTTAAAGCTGTCAGCTCAAAAACTGGACCTGGTGA
ATACATGAGAAATGCGTTGTGGGATCATAAATCAATCCCATCACAGGTAA
GCACTCATTTCTGTTGCATTGGAAATTTATTTGAATAAACGCCTCTGGGG
TTTATTAATTTTTTTGGATTTTAGGAAAGGCGTTTATTCGAGGGGGCGTT
TAAAAGAAGGGGGGTTTATTCGAAGTAATACAGCATACAAAAAGTATTCT
TTTGTGTATTTACAATAGACAAAAATTACTGACCATACAGTAGAATTTCA
GAATGATGTTTCAGCTATTCATATCTTCAAAAGGGAAAAAAATGACGATG
AGTTAAGTTTTCACTAGAGAAAAAAGTAGTAATGTTTGTCGATGGTCGAT
CTCGTTACAATTTTCATATTTCACCTTTTTTTCAGACCAAAATTGTATGG
GCTGATCCCTTAAAGAAAGGATGGGTACCAAAACGTTCATACAGATGGGA
GTTGATTCACAGACCTTCTATTGGTCTCATCAGGTAAAGAGAAGGTTGCT
GAGGAAGTTAATGTGGACAAATACTATGAATGATACATTGTCAATAAGAA
ACAAAAAGTTCTTCTGACAATAACAAAACAACAGTTATCCAAAGGATTTA
TTAGTAGTAAAGCTGTTAATAAAGCGTTTCAACAATCTTGCAAGGAGTGT
TCCTTTGACAGAAAATATTTTTTGAAAAACCGGTTTTTAACTACAGTAAC
AGCCAAAGACAAATTCTTGCACCAAAATCATCAGCTAGATAAATTAAAAC
ACAATTGAATTAATAAGGTTTCATACAATTCTTATTTCTCAGAATCAAGA
TTATGGACGGAGAAGAATTAGCTAGTGACACTGGATACATCATTGACCAC
CAATTGAAAGGAGGGCGTGTTGGAGTTTTAGCTTTCTCGCAAAAAGAAAT
TGTTTTCTCTGACCTTCAATACAAATGTAACGGTAAGAGCTTGNCACCTG
TTAATGGAAAAGAAAAAAGTCCTTAATTTTAACCAACTCTAACCAAATCT
GTTCCCAGCTGGCACACAACGTTGTTTCAACGTTATTCTAACGTTCACAA
CGTCCATTTAACGTTAGATTAACGTTAAAACAACGTTGTGTGCCAGCTGG
GTGGTTTTATTCTTATTTTGTTTAATCACAACTTTTTACATAAAAACCTA
TTGTAGAGGAACTTATTATGTGAACACTAGAATTGGTATTGGACTGAAAA
AAGTACCAAATCCTGTTTTCATGCACAACTGTTTGGTATTCTTGTTATCC
CCTAAACATGTGGCAAAGGCATATATATGTGTTTTGTTTTTCTTGTAGAG
GGTGCTTATCTTCTCCTCGTAGATTGCTCGATAAGTAAATAGAGCGTTTT
TATAATAAAGAGTTGACACAATATCTAAGTTTCAAACTCGGAGTTTCATG
GTGCTCAGGCACCAATCATCAGTGAAATGAGATATGTTTTGTTTTTCATG
ATATTTGAAGCCATACTTTTAACATTTATATCAATGTTCTATTTTCTAGA
AAAAACACCAGAGGATTACAAACCAAACCTACCAAACTAAATATGACAAC
AATATTCTTCTGGCAGTGAGTTGACCAAGGAAGTTAACAAAACCAAAAAC
ATCAATCATTCAAATACAAAAACAAATCTTGAACAAACAAACACGTATAG
AATAGATAAAGTAGGAGCATTATAAACAAAACCTTCTTGTTTGAAAAATA
AAGAGGAAGAACATATAATGGACTCATGGCAGAGCTAGAAACACGACATA
TTGACAGTTGGAAAGCTTGGGATTTCAGAAATTGTAGATCTTGAAAACTA
CAAGAAGACATAAAGACATTGAGTAAGAAAGTGTAAAAATGTATTTAAGA
CTTAAATAAATGCTAATGAACATCTAATATTCAAAACAATTTCAAAATTT
TAAAATTTTCTCTTTGAGATTGATTTAAATGCAAATTTGTAAGAAAATGA
AATACTAGAGCCAATACCTTTGCAGAAAGTCAAAGCCAAAAGGTGCTCCC
GAATAAGTCTCTAAGTTGTTAAGTTCTAATGGAAACTCAAGGTATGTTAA
CTAGAAAATCTTTAAAAACATAAAAAATATTTAGAATTTTTTCATTTTAT
GAGAAAAATATTGTACCCTTTTTTTTTTGTTATATTTTTTATTGGTATGT
AATAATTATTCTTTTTTGTCGTAATTCTACGACTGTATATTTTAAAAAAC
TCTATAGAAATATTTTTTGTTCTCAATTTTTGTTTCAATATTTTAGCTTT
TTTTTGTTTTATTTTAGTTTTCTTTTGTTTAGTTTACGTGCACAAATATG
CTAAAATATATAATAAAGAAAAA Coding sequence (CDS) from alignment at sc0000097:229839..232911- >TCONS_00009629 ID=TCONS_00009629|Name=TCONS_00009629|organism=Clytia hemisphaerica|type=CDS|length=3225bp|location=Sequence derived from alignment at sc0000097:229839..232911- (Clytia hemisphaerica) AAAAAACACCAGAGGATTACAAACCAAACCTACCAAACTAAAATCAAGAT TATGGACGGAGAAGAATTAGCTAGTGACACTGGATACATCATTGACCACC AATTGAAAGGAGGGCGTGTTGGAGTTTTAGCTTTCTCGCAAAAAGAAATT GTTTTCTCTGACCTTCAATACAAATGTAACGACCAAAATTGTATGGGCTG ATCCCTTAAAGAAAGGATGGGTACCAAAACGTTCATACAGATGGGAGTTG ATTCACAGACCTTCTATTGGTCTCATCAGGCACTCAACGATTCAGTGGAG TCGATTTCTCTGGAACCTTCTACATTCATGACGACAAAGATGATGACTTC GCTGGATTCGTGTTTTCTTTACAAGACAGCAGTAATTTCTATGCTCTCAT GTGGAAAAAAGATAAACAAACATATTGGTATGAAACACCATTTAAAAGTG TTGGACACCCTGGTATTCAACTTAAAGCTGTCAGCTCAAAAACTGGACCT GGTGAATACATGAGAAATGCGTTGTGGGATCATAAATCAATCCCATCACA GATGATTTTAAATTTACCATTTCACAATATAATTCTTTTTAAACAGGGTG CTGAGTTGAAACAATGGAGAAACTCTGATCCTGGAATTGCTGTCGAAAAA ACACCAGAGGATTACAAACCAAACCTACCAAACTAAAATCAAGATTATGG ACGGAGAAGAATTAGCTAGTGACACTGGATACATCATTGACCACCAATTG AAAGGAGGGCGTGTTGGAGTTTTAGCTTTCTCGCAAAAAGAAATTGTTTT CTCTGACCTTCAATACAAATGTAACGACCAAAATTGTATGGGCTGATCCC TTAAAGAAAGGATGGGTACCAAAACGTTCATACAGATGGGAGTTGATTCA CAGACCTTCTATTGGTCTCATCAGGCACTCAACGATTCAGTGGAGTCGAT TTCTCTGGAACCTTCTACATTCATGACGACAAAGATGATGACTTCGCTGG ATTCGTGTTTTCTTTACAAGACAGCAGTAATTTCTATGCTCTCATGTGGA AAAAAGATAAACAAACATATTGGTATGAAACACCATTTAAAAGTGTTGGA CACCCTGGTATTCAACTTAAAGCTGTCAGCTCAAAAACTGGACCTGGTGA ATACATGAGAAATGCGTTGTGGGATCATAAATCAATCCCATCACAGATGA TTTTAAATTTACCATTTCACAATATAATTCTTTTTAAACAGGGTGCTGAG TTGAAACAATGGAGAAACTCTGATCCTGGAATTGCTGTCGAAAAAACACC AGAGGATTACAAACCAAACCTACCAAACTAAAATCAAGATTATGGACGGA GAAGAATTAGCTAGTGACACTGGATACATCATTGACCACCAATTGAAAGG AGGGCGTGTTGGAGTTTTAGCTTTCTCGCAAAAAGAAATTGTTTTCTCTG ACCTTCAATACAAATGTAACGACCAAAATTGTATGGGCTGATCCCTTAAA GAAAGGATGGGTACCAAAACGTTCATACAGATGGGAGTTGATTCACAGAC CTTCTATTGGTCTCATCAGGCACTCAACGATTCAGTGGAGTCGATTTCTC TGGAACCTTCTACATTCATGACGACAAAGATGATGACTTCGCTGGATTCG TGTTTTCTTTACAAGACAGCAGTAATTTCTATGCTCTCATGTGGAAAAAA GATAAACAAACATATTGGTATGAAACACCATTTAAAAGTGTTGGACACCC TGGTATTCAACTTAAAGCTGTCAGCTCAAAAACTGGACCTGGTGAATACA TGAGAAATGCGTTGTGGGATCATAAATCAATCCCATCACAGATGATTTTA AATTTACCATTTCACAATATAATTCTTTTTAAACAGGGTGCTGAGTTGAA ACAATGGAGAAACTCTGATCCTGGAATTGCTGTCGAAAAAACACCAGAGG ATTACAAACCAAACCTACCAAACTAAAATCAAGATTATGGACGGAGAAGA ATTAGCTAGTGACACTGGATACATCATTGACCACCAATTGAAAGGAGGGC GTGTTGGAGTTTTAGCTTTCTCGCAAAAAGAAATTGTTTTCTCTGACCTT CAATACAAATGTAACGACCAAAATTGTATGGGCTGATCCCTTAAAGAAAG GATGGGTACCAAAACGTTCATACAGATGGGAGTTGATTCACAGACCTTCT ATTGGTCTCATCAGGCACTCAACGATTCAGTGGAGTCGATTTCTCTGGAA CCTTCTACATTCATGACGACAAAGATGATGACTTCGCTGGATTCGTGTTT TCTTTACAAGACAGCAGTAATTTCTATGCTCTCATGTGGAAAAAAGATAA ACAAACATATTGGTATGAAACACCATTTAAAAGTGTTGGACACCCTGGTA TTCAACTTAAAGCTGTCAGCTCAAAAACTGGACCTGGTGAATACATGAGA AATGCGTTGTGGGATCATAAATCAATCCCATCACAGATGATTTTAAATTT ACCATTTCACAATATAATTCTTTTTAAACAGGGTGCTGAGTTGAAACAAT GGAGAAACTCTGATCCTGGAATTGCTGTCGAAAAAACACCAGAGGATTAC AAACCAAACCTACCAAACTAAAATCAAGATTATGGACGGAGAAGAATTAG CTAGTGACACTGGATACATCATTGACCACCAATTGAAAGGAGGGCGTGTT GGAGTTTTAGCTTTCTCGCAAAAAGAAATTGTTTTCTCTGACCTTCAATA CAAATGTAACGACCAAAATTGTATGGGCTGATCCCTTAAAGAAAGGATGG GTACCAAAACGTTCATACAGATGGGAGTTGATTCACAGACCTTCTATTGG TCTCATCAGGCACTCAACGATTCAGTGGAGTCGATTTCTCTGGAACCTTC TACATTCATGACGACAAAGATGATGACTTCGCTGGATTCGTGTTTTCTTT ACAAGACAGCAGTAATTTCTATGCTCTCATGTGGAAAAAAGATAAACAAA CATATTGGTATGAAACACCATTTAAAAGTGTTGGACACCCTGGTATTCAA CTTAAAGCTGTCAGCTCAAAAACTGGACCTGGTGAATACATGAGAAATGC GTTGTGGGATCATAAATCAATCCCATCACAGATGATTTTAAATTTACCAT TTCACAATATAATTCTTTTTAAACAGGGTGCTGAGTTGAAACAATGGAGA AACTCTGATCCTGGAATTGCTGTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00009629-exon-sc0000097-1575043694:232792..232911 | TCONS_00009629-exon-sc0000097-1575043694:232792..232911 | Clytia hemisphaerica | exon |
TCONS_00009629-exon-sc0000097-1575043694:232116..232387 | TCONS_00009629-exon-sc0000097-1575043694:232116..232387 | Clytia hemisphaerica | exon |
TCONS_00009629-exon-sc0000097-1575043694:231679..231776 | TCONS_00009629-exon-sc0000097-1575043694:231679..231776 | Clytia hemisphaerica | exon |
TCONS_00009629-exon-sc0000097-1575043694:231230..231369 | TCONS_00009629-exon-sc0000097-1575043694:231230..231369 | Clytia hemisphaerica | exon |
TCONS_00009629-exon-sc0000097-1575043694:229839..230662 | TCONS_00009629-exon-sc0000097-1575043694:229839..230662 | Clytia hemisphaerica | exon |
TCONS_00009629-exon-sc0000097-1510915933:232792..232911 | TCONS_00009629-exon-sc0000097-1510915933:232792..232911 | Clytia hemisphaerica | exon |
TCONS_00009629-exon-sc0000097-1510915933:232116..232387 | TCONS_00009629-exon-sc0000097-1510915933:232116..232387 | Clytia hemisphaerica | exon |
TCONS_00009629-exon-sc0000097-1510915933:231679..231776 | TCONS_00009629-exon-sc0000097-1510915933:231679..231776 | Clytia hemisphaerica | exon |
TCONS_00009629-exon-sc0000097-1510915933:231230..231369 | TCONS_00009629-exon-sc0000097-1510915933:231230..231369 | Clytia hemisphaerica | exon |
TCONS_00009629-exon-sc0000097-1510915933:229839..230662 | TCONS_00009629-exon-sc0000097-1510915933:229839..230662 | Clytia hemisphaerica | exon |
TCONS_00009629-exon-sc0000097-1491911889:232792..232911 | TCONS_00009629-exon-sc0000097-1491911889:232792..232911 | Clytia hemisphaerica | exon |
TCONS_00009629-exon-sc0000097-1491911889:232116..232387 | TCONS_00009629-exon-sc0000097-1491911889:232116..232387 | Clytia hemisphaerica | exon |
TCONS_00009629-exon-sc0000097-1491911889:231679..231776 | TCONS_00009629-exon-sc0000097-1491911889:231679..231776 | Clytia hemisphaerica | exon |
TCONS_00009629-exon-sc0000097-1491911889:231230..231369 | TCONS_00009629-exon-sc0000097-1491911889:231230..231369 | Clytia hemisphaerica | exon |
TCONS_00009629-exon-sc0000097-1491911889:229839..230662 | TCONS_00009629-exon-sc0000097-1491911889:229839..230662 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000097 | supercontig | sc0000097:229839..232911 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
Term | Definition |
GO:0007155 | cell adhesion |
Vocabulary: Cellular Component
Term | Definition |
GO:0005576 | extracellular region |
Vocabulary: Molecular Function
Term | Definition |
GO:0005509 | calcium ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0007155 |
cell adhesion |
cellular_component |
GO:0005576 |
extracellular region |
molecular_function |
GO:0005509 |
calcium ion binding |
Blast
BLAST of TCONS_00009629 vs. Swiss-Prot (Human)
Match: TSP3 (Thrombospondin-3 OS=Homo sapiens GN=THBS3 PE=1 SV=1) HSP 1 Score: 256.529 bits (654), Expect = 3.814e-75 Identity = 108/202 (53.47%), Postives = 151/202 (74.75%), Query Frame = 3
Query: 51 NIILFKQGAELKQWRNSDPGIAVGTQRFSGVDFSGTFYIHDDKDDDFAGFVFSLQDSSNFYALMWKKDKQTYWYETPFKSVGHPGIQLKAVSSKTGPGEYMRNALWDHKSIPSQTKIVWADPLKKGWVPKRSYRWELIHRPSIGLIRIKIMDGEELASDTGYIIDHQLKGGRVGVLAFSQKEIVFSDLQYKCNEKTPEDYKP 656
N ++ QG E+ Q NSDPG+AVG F+GVDF GTF+++ DDD+AGF+FS QDS FY +MWK+ +QTYW TPF++V PG+QLKAV+S +GPGE++RNALW P Q +++W DP GW K SYRW+L+HRP +G IR+K+ +G +L +D+G IID ++GGR+GV FSQ+ I++S+LQY+CN+ PED++P
Sbjct: 745 NWVVLNQGMEIVQTMNSDPGLAVGYTAFNGVDFEGTFHVNTVTDDDYAGFLFSYQDSGRFYVVMWKQTEQTYWQATPFRAVAQPGLQLKAVTSVSGPGEHLRNALWHTGHTPDQVRLLWTDPRNVGWRDKTSYRWQLLHRPQVGYIRVKLYEGPQLVADSGVIIDTSMRGGRLGVFCFSQENIIWSNLQYRCNDTVPEDFEP 946
The following BLAST results are available for this feature:
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