TCONS_00009629-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00009629-protein
Unique NameTCONS_00009629-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length214

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00009629-protein ID=TCONS_00009629-protein|Name=TCONS_00009629-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
MILNLPFHNIILFKQGAELKQWRNSDPGIAVGTQRFSGVDFSGTFYIHDD
KDDDFAGFVFSLQDSSNFYALMWKKDKQTYWYETPFKSVGHPGIQLKAVS
SKTGPGEYMRNALWDHKSIPSQTKIVWADPLKKGWVPKRSYRWELIHRPS
IGLIRIKIMDGEELASDTGYIIDHQLKGGRVGVLAFSQKEIVFSDLQYKC
NEKTPEDYKPNLPN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_005374XLOC_005374Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00009629TCONS_00009629Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008859Thrombospondin_C
IPR013320ConA-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0007155cell adhesion
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007155 cell adhesion
cellular_component GO:0005576 extracellular region
molecular_function GO:0005509 calcium ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008859Thrombospondin, C-terminalPFAMPF05735TSP_Ccoord: 13..202
e-value: 4.8E-78
score: 261.5
IPR008859Thrombospondin, C-terminalPROSITEPS51236TSP_CTERcoord: 1..205
score: 76.787
NoneNo IPR availableGENE3D2.60.120.200coord: 10..202
e-value: 3.7E-69
score: 232.2
IPR013320Concanavalin A-like lectin/glucanase domainSUPERFAMILY49899Concanavalin A-like lectins/glucanasescoord: 9..202

Blast
[Close]
BLAST of TCONS_00009629-protein vs. Swiss-Prot (Human)
Match: TSP3 (Thrombospondin-3 OS=Homo sapiens GN=THBS3 PE=1 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.224e-83
Identity = 108/202 (53.47%), Postives = 151/202 (74.75%), Query Frame = 0 
Query:    9 NIILFKQGAELKQWRNSDPGIAVGTQRFSGVDFSGTFYIHDDKDDDFAGFVFSLQDSSNFYALMWKKDKQTYWYETPFKSVGHPGIQLKAVSSKTGPGEYMRNALWDHKSIPSQTKIVWADPLKKGWVPKRSYRWELIHRPSIGLIRIKIMDGEELASDTGYIIDHQLKGGRVGVLAFSQKEIVFSDLQYKCNEKTPEDYKP 210
            N ++  QG E+ Q  NSDPG+AVG   F+GVDF GTF+++   DDD+AGF+FS QDS  FY +MWK+ +QTYW  TPF++V  PG+QLKAV+S +GPGE++RNALW     P Q +++W DP   GW  K SYRW+L+HRP +G IR+K+ +G +L +D+G IID  ++GGR+GV  FSQ+ I++S+LQY+CN+  PED++P
Sbjct:  745 NWVVLNQGMEIVQTMNSDPGLAVGYTAFNGVDFEGTFHVNTVTDDDYAGFLFSYQDSGRFYVVMWKQTEQTYWQATPFRAVAQPGLQLKAVTSVSGPGEHLRNALWHTGHTPDQVRLLWTDPRNVGWRDKTSYRWQLLHRPQVGYIRVKLYEGPQLVADSGVIIDTSMRGGRLGVFCFSQENIIWSNLQYRCNDTVPEDFEP 946
The following BLAST results are available for this feature:
BLAST of TCONS_00009629-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSP31.224e-8353.47Thrombospondin-3 OS=Homo sapiens GN=THBS3 PE=1 SV=... [more]
back to top